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300
https://:@github.com/parmed/ParmEd.git
9eda010f0342ace7a3ccc6452a8c8014c73bd130
@@ -282,7 +282,7 @@ class AmberFormat(object): rawdata = self.parm_data[flag] self.parm_data[flag] = [] for line in rawdata: - self.parm_data[flag].extend(self.formats[key].read(line)) + self.parm_data[flag].extend(self.formats[flag].read(line)) try: for i, chg in enumerate(self.parm_data[self.charge_flag]):
chemistry/amber/amberformat.py
ReplaceText(target='flag' @(285,61)->(285,64))
class AmberFormat(object): rawdata = self.parm_data[flag] self.parm_data[flag] = [] for line in rawdata: self.parm_data[flag].extend(self.formats[key].read(line)) try: for i, chg in enumerate(self.parm_data[self.charge_flag]):
class AmberFormat(object): rawdata = self.parm_data[flag] self.parm_data[flag] = [] for line in rawdata: self.parm_data[flag].extend(self.formats[flag].read(line)) try: for i, chg in enumerate(self.parm_data[self.charge_flag]):
301
https://:@github.com/parmed/ParmEd.git
9167bf221e4fe5d71ccaa6bf310fce60f09dc873
@@ -192,7 +192,7 @@ def diff_files(file1, file2, ignore_whitespace=True, i = 1 same = True if ignore_whitespace: - while l1 and l2: + while l1 or l2: if l1.strip() != l2.strip(): if l1.startswith('%VERSION') and l2.startswith('%VERSION'): l1 = f1.readline()
test/utils.py
ReplaceText(target='or' @(195,21)->(195,24))
def diff_files(file1, file2, ignore_whitespace=True, i = 1 same = True if ignore_whitespace: while l1 and l2: if l1.strip() != l2.strip(): if l1.startswith('%VERSION') and l2.startswith('%VERSION'): l1 = f1.readline()
def diff_files(file1, file2, ignore_whitespace=True, i = 1 same = True if ignore_whitespace: while l1 or l2: if l1.strip() != l2.strip(): if l1.startswith('%VERSION') and l2.startswith('%VERSION'): l1 = f1.readline()
302
https://:@github.com/parmed/ParmEd.git
b5fdf3d9b7095b96bcb8ac0bdbdfb3694d1d5220
@@ -334,7 +334,7 @@ class ChamberParm(AmberParm): for i, j, k, l, m, n in zip(it, it, it, it, it, it): self.cmaps.append( Cmap(self.atoms[i-1], self.atoms[j-1], self.atoms[k-1], - self.atoms[k-1], self.atoms[m-1], self.cmap_types[n-1]) + self.atoms[l-1], self.atoms[m-1], self.cmap_types[n-1]) ) #===================================================
chemistry/amber/_chamberparm.py
ReplaceText(target='l' @(337,36)->(337,37))
class ChamberParm(AmberParm): for i, j, k, l, m, n in zip(it, it, it, it, it, it): self.cmaps.append( Cmap(self.atoms[i-1], self.atoms[j-1], self.atoms[k-1], self.atoms[k-1], self.atoms[m-1], self.cmap_types[n-1]) ) #===================================================
class ChamberParm(AmberParm): for i, j, k, l, m, n in zip(it, it, it, it, it, it): self.cmaps.append( Cmap(self.atoms[i-1], self.atoms[j-1], self.atoms[k-1], self.atoms[l-1], self.atoms[m-1], self.cmap_types[n-1]) ) #===================================================
303
https://:@github.com/parmed/ParmEd.git
820a80ccad22ee881042f03b83a0f07b5f1b537d
@@ -1272,7 +1272,7 @@ class Structure(object): break elif a2.residue is None: break - elif a1.residue.name != a1.residue.name: + elif a1.residue.name != a2.residue.name: break if not a1.type and not a2.type: if a1.name != a2.name: break
chemistry/structure.py
ReplaceText(target='a2' @(1275,48)->(1275,50))
class Structure(object): break elif a2.residue is None: break elif a1.residue.name != a1.residue.name: break if not a1.type and not a2.type: if a1.name != a2.name: break
class Structure(object): break elif a2.residue is None: break elif a1.residue.name != a2.residue.name: break if not a1.type and not a2.type: if a1.name != a2.name: break
304
https://:@github.com/parmed/ParmEd.git
4cba8197ae90a1af4abe0dee3f19e1c8c61c959f
@@ -313,7 +313,7 @@ class Mol2File(object): if a == '0': continue for atom in res: if atom.name == a: - atom.connections.append(atom) + res.connections.append(atom) break else: raise Mol2Error('Residue connection atom %s not '
parmed/formats/mol2.py
ReplaceText(target='res' @(316,32)->(316,36))
class Mol2File(object): if a == '0': continue for atom in res: if atom.name == a: atom.connections.append(atom) break else: raise Mol2Error('Residue connection atom %s not '
class Mol2File(object): if a == '0': continue for atom in res: if atom.name == a: res.connections.append(atom) break else: raise Mol2Error('Residue connection atom %s not '
305
https://:@github.com/parmed/ParmEd.git
9be43ac3521aca71f84de9b2b11740b00dfdb1b6
@@ -696,6 +696,6 @@ def _set_owner(atoms, owner_array, atm, mol_id): if not partner.marked: owner_array.append(partner.idx) _set_owner(atoms, owner_array, partner.idx, mol_id) - assert partner.marked != mol_id, 'Atom in multiple molecules!' + assert partner.marked == mol_id, 'Atom in multiple molecules!' # ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
parmed/charmm/psf.py
ReplaceText(target='==' @(699,30)->(699,32))
def _set_owner(atoms, owner_array, atm, mol_id): if not partner.marked: owner_array.append(partner.idx) _set_owner(atoms, owner_array, partner.idx, mol_id) assert partner.marked != mol_id, 'Atom in multiple molecules!' # ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
def _set_owner(atoms, owner_array, atm, mol_id): if not partner.marked: owner_array.append(partner.idx) _set_owner(atoms, owner_array, partner.idx, mol_id) assert partner.marked == mol_id, 'Atom in multiple molecules!' # ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
306
https://:@github.com/parmed/ParmEd.git
8f1dc98d485ea57e4046494ad1e6f84cfbd17f4f
@@ -449,7 +449,7 @@ class ParameterSet(object): for name, residue in iteritems(self.residues): if isinstance(residue, ResidueTemplateContainer): for res in residue: - for atom in residue: + for atom in res: atom.atom_type = self.atom_types[atom.type] else: assert isinstance(residue, ResidueTemplate), 'Wrong type!'
parmed/parameters.py
ReplaceText(target='res' @(452,32)->(452,39))
class ParameterSet(object): for name, residue in iteritems(self.residues): if isinstance(residue, ResidueTemplateContainer): for res in residue: for atom in residue: atom.atom_type = self.atom_types[atom.type] else: assert isinstance(residue, ResidueTemplate), 'Wrong type!'
class ParameterSet(object): for name, residue in iteritems(self.residues): if isinstance(residue, ResidueTemplateContainer): for res in residue: for atom in res: atom.atom_type = self.atom_types[atom.type] else: assert isinstance(residue, ResidueTemplate), 'Wrong type!'
307
https://:@github.com/parmed/ParmEd.git
403c2874c1826cbe182386959a23118b33d1e27c
@@ -219,7 +219,7 @@ class OpenMMParameterSet(ParameterSet): if tag not in sub_content: raise KeyError('Content of an attribute-containing element ' 'specified incorrectly.') - attributes = [key for key in content if key != tag] + attributes = [key for key in sub_content if key != tag] element_content = sub_content[tag] dest.write(' <%s' % tag) for attribute in attributes:
parmed/openmm/parameters.py
ReplaceText(target='sub_content' @(222,49)->(222,56))
class OpenMMParameterSet(ParameterSet): if tag not in sub_content: raise KeyError('Content of an attribute-containing element ' 'specified incorrectly.') attributes = [key for key in content if key != tag] element_content = sub_content[tag] dest.write(' <%s' % tag) for attribute in attributes:
class OpenMMParameterSet(ParameterSet): if tag not in sub_content: raise KeyError('Content of an attribute-containing element ' 'specified incorrectly.') attributes = [key for key in sub_content if key != tag] element_content = sub_content[tag] dest.write(' <%s' % tag) for attribute in attributes:
308
https://:@github.com/parmed/ParmEd.git
657ba99e2338df75ef118155d95d144c7b33ab32
@@ -281,7 +281,7 @@ T = RNAResidue('Thymine', 'T', ['THY', 'T3', 'T5', 'TN', WATER_NAMES = set(['WAT', 'HOH', 'TIP3', 'TIP4', 'TIP5', 'SPCE', 'SPC']) -SOLVENT_NAMES = WATER_NAMES ^ set({'SOL'}) +SOLVENT_NAMES = WATER_NAMES | set({'SOL'}) EXTRA_POINT_NAMES = set(['EP', 'LP']) CATION_NAMES = set(['Na+', 'Li+', 'Mg+', 'Rb+', 'MG', 'Cs+', 'POT', 'SOD', 'MG2', 'CAL', 'RUB', 'LIT', 'ZN2', 'CD2', 'NA', 'K+', 'K',
parmed/residue.py
ReplaceText(target='|' @(284,28)->(284,29))
T = RNAResidue('Thymine', 'T', ['THY', 'T3', 'T5', 'TN', WATER_NAMES = set(['WAT', 'HOH', 'TIP3', 'TIP4', 'TIP5', 'SPCE', 'SPC']) SOLVENT_NAMES = WATER_NAMES ^ set({'SOL'}) EXTRA_POINT_NAMES = set(['EP', 'LP']) CATION_NAMES = set(['Na+', 'Li+', 'Mg+', 'Rb+', 'MG', 'Cs+', 'POT', 'SOD', 'MG2', 'CAL', 'RUB', 'LIT', 'ZN2', 'CD2', 'NA', 'K+', 'K',
T = RNAResidue('Thymine', 'T', ['THY', 'T3', 'T5', 'TN', WATER_NAMES = set(['WAT', 'HOH', 'TIP3', 'TIP4', 'TIP5', 'SPCE', 'SPC']) SOLVENT_NAMES = WATER_NAMES | set({'SOL'}) EXTRA_POINT_NAMES = set(['EP', 'LP']) CATION_NAMES = set(['Na+', 'Li+', 'Mg+', 'Rb+', 'MG', 'Cs+', 'POT', 'SOD', 'MG2', 'CAL', 'RUB', 'LIT', 'ZN2', 'CD2', 'NA', 'K+', 'K',
309
https://:@github.com/parmed/ParmEd.git
bd2a1120adf53ab364dda802a272c19c7d335fdd
@@ -374,7 +374,7 @@ class OpenMMParameterSet(ParameterSet): for attribute in attributes: dest.write(' %s="%s"' % (attribute, sub_content[attribute])) escaped_element_content = escape(element_content, XML_ESCAPES) - dest.write('>%s</%s>\n' % (element_content, tag)) + dest.write('>%s</%s>\n' % (escaped_element_content, tag)) else: raise TypeError('Incorrect type of the %s element content' % tag) dest.write(' </Info>\n')
parmed/openmm/parameters.py
ReplaceText(target='escaped_element_content' @(377,47)->(377,62))
class OpenMMParameterSet(ParameterSet): for attribute in attributes: dest.write(' %s="%s"' % (attribute, sub_content[attribute])) escaped_element_content = escape(element_content, XML_ESCAPES) dest.write('>%s</%s>\n' % (element_content, tag)) else: raise TypeError('Incorrect type of the %s element content' % tag) dest.write(' </Info>\n')
class OpenMMParameterSet(ParameterSet): for attribute in attributes: dest.write(' %s="%s"' % (attribute, sub_content[attribute])) escaped_element_content = escape(element_content, XML_ESCAPES) dest.write('>%s</%s>\n' % (escaped_element_content, tag)) else: raise TypeError('Incorrect type of the %s element content' % tag) dest.write(' </Info>\n')
310
https://:@github.com/parmed/ParmEd.git
62e0c8aa4561628d005e84bbe97b1ef37f32dee5
@@ -502,7 +502,7 @@ class OpenMMParameterSet(ParameterSet): patched_residue = residue.apply_patch(patch) for atom in patch.atoms: - if atom.name not in patched_residue: + if atom.name not in residue: dest.write(' <AddAtom name="%s" type="%s" charge="%s"/>\n' % (atom.name, atom.type, atom.charge)) else:
parmed/openmm/parameters.py
ReplaceText(target='residue' @(505,36)->(505,51))
class OpenMMParameterSet(ParameterSet): patched_residue = residue.apply_patch(patch) for atom in patch.atoms: if atom.name not in patched_residue: dest.write(' <AddAtom name="%s" type="%s" charge="%s"/>\n' % (atom.name, atom.type, atom.charge)) else:
class OpenMMParameterSet(ParameterSet): patched_residue = residue.apply_patch(patch) for atom in patch.atoms: if atom.name not in residue: dest.write(' <AddAtom name="%s" type="%s" charge="%s"/>\n' % (atom.name, atom.type, atom.charge)) else:
311
https://:@github.com/parmed/ParmEd.git
90fa4626c3db158047991044f4dd4619a7cc2599
@@ -502,7 +502,7 @@ class AmberFormat(object): own_handle = True elif hasattr(fname, 'read'): prm = fname - own_handle = True + own_handle = False else: raise TypeError('%s must be a file name or file-like object' % fname)
parmed/amber/amberformat.py
ReplaceText(target='False' @(505,25)->(505,29))
class AmberFormat(object): own_handle = True elif hasattr(fname, 'read'): prm = fname own_handle = True else: raise TypeError('%s must be a file name or file-like object' % fname)
class AmberFormat(object): own_handle = True elif hasattr(fname, 'read'): prm = fname own_handle = False else: raise TypeError('%s must be a file name or file-like object' % fname)
312
https://:@github.com/xmunoz/sodapy.git
76bdcfd9670e94c833b66b8894ea4153c27004ee
@@ -71,7 +71,7 @@ class Socrata(object): else: self.uri_prefix = "https://" - if isinstance(timeout, (int, long, float)): + if not isinstance(timeout, (int, long, float)): raise TypeError("Timeout must be numeric.") self.timeout = timeout
sodapy/__init__.py
ReplaceText(target='not ' @(74,11)->(74,11))
class Socrata(object): else: self.uri_prefix = "https://" if isinstance(timeout, (int, long, float)): raise TypeError("Timeout must be numeric.") self.timeout = timeout
class Socrata(object): else: self.uri_prefix = "https://" if not isinstance(timeout, (int, long, float)): raise TypeError("Timeout must be numeric.") self.timeout = timeout
313
https://:@github.com/xmunoz/sodapy.git
be6804a7f566eda08af7bb5d67f9c75512581189
@@ -129,7 +129,7 @@ class Socrata(object): next(iter(kwargs))) if order: - kwargs.append(('order', order)) + params.append(('order', order)) results = self._perform_request("get", DATASETS_PATH, params=params + [('offset', offset)])
sodapy/__init__.py
ReplaceText(target='params' @(132,12)->(132,18))
class Socrata(object): next(iter(kwargs))) if order: kwargs.append(('order', order)) results = self._perform_request("get", DATASETS_PATH, params=params + [('offset', offset)])
class Socrata(object): next(iter(kwargs))) if order: params.append(('order', order)) results = self._perform_request("get", DATASETS_PATH, params=params + [('offset', offset)])
314
https://:@github.com/visgence/teleceptor.git
4a8db10b79207b4bf8b48bbcaafdd03cc1166a2f
@@ -397,7 +397,7 @@ def _updateCalibration(sensor, coefficients, timestamp, session): logging.debug("Comparing coefficients.") # check if coefficients are different - if "{}".format(Cal.coefficients) == "{}".format(coefficients): + if "{}".format(Cal.coefficients) != "{}".format(coefficients): logging.debug("Coefficients are different, updating...") assert isinstance(coefficients, list)
teleceptor/api/sensors.py
ReplaceText(target='!=' @(400,49)->(400,51))
def _updateCalibration(sensor, coefficients, timestamp, session): logging.debug("Comparing coefficients.") # check if coefficients are different if "{}".format(Cal.coefficients) == "{}".format(coefficients): logging.debug("Coefficients are different, updating...") assert isinstance(coefficients, list)
def _updateCalibration(sensor, coefficients, timestamp, session): logging.debug("Comparing coefficients.") # check if coefficients are different if "{}".format(Cal.coefficients) != "{}".format(coefficients): logging.debug("Coefficients are different, updating...") assert isinstance(coefficients, list)
315
https://:@github.com/projectmesa/mesa.git
0893a8f03d7f22f1b064e66c97da3dddd987b7ea
@@ -50,7 +50,7 @@ class Schelling(Model): self.homophily = homophily self.schedule = RandomActivation(self) - self.grid = SingleGrid(height, width, torus=True) + self.grid = SingleGrid(width, height, torus=True) self.happy = 0 self.datacollector = DataCollector(
examples/schelling/model.py
ArgSwap(idxs=0<->1 @(53,20)->(53,30))
class Schelling(Model): self.homophily = homophily self.schedule = RandomActivation(self) self.grid = SingleGrid(height, width, torus=True) self.happy = 0 self.datacollector = DataCollector(
class Schelling(Model): self.homophily = homophily self.schedule = RandomActivation(self) self.grid = SingleGrid(width, height, torus=True) self.happy = 0 self.datacollector = DataCollector(
316
https://:@github.com/projectmesa/mesa.git
9277b0f55ed63d3b8a32c7f3e52e3df1e7de6579
@@ -31,7 +31,7 @@ class PdGrid(Model): Determines the agent activation regime. payoffs: (optional) Dictionary of (move, neighbor_move) payoffs. ''' - self.grid = SingleGrid(height, width, torus=True) + self.grid = SingleGrid(width, height, torus=True) self.schedule_type = schedule_type self.schedule = self.schedule_types[self.schedule_type](self)
examples/pd_grid/pd_grid/model.py
ArgSwap(idxs=0<->1 @(34,20)->(34,30))
class PdGrid(Model): Determines the agent activation regime. payoffs: (optional) Dictionary of (move, neighbor_move) payoffs. ''' self.grid = SingleGrid(height, width, torus=True) self.schedule_type = schedule_type self.schedule = self.schedule_types[self.schedule_type](self)
class PdGrid(Model): Determines the agent activation regime. payoffs: (optional) Dictionary of (move, neighbor_move) payoffs. ''' self.grid = SingleGrid(width, height, torus=True) self.schedule_type = schedule_type self.schedule = self.schedule_types[self.schedule_type](self)
317
https://:@github.com/iCHEF/queryfilter.git
96c25a4e5e750ae3415712d6812eee04d2187e64
@@ -70,7 +70,7 @@ class DictFilterMixin(object): if not dictobj: # Point to which level doesn't exist exactly return handle_missing_field( - "__".join(level_field_names[:index+1]) + "__".join(parent_field_names[:index+1]) ) if final_field_name not in dictobj: return handle_missing_field(field_name)
queryfilter/base.py
ReplaceText(target='parent_field_names' @(73,30)->(73,47))
class DictFilterMixin(object): if not dictobj: # Point to which level doesn't exist exactly return handle_missing_field( "__".join(level_field_names[:index+1]) ) if final_field_name not in dictobj: return handle_missing_field(field_name)
class DictFilterMixin(object): if not dictobj: # Point to which level doesn't exist exactly return handle_missing_field( "__".join(parent_field_names[:index+1]) ) if final_field_name not in dictobj: return handle_missing_field(field_name)
318
https://:@github.com/slaclab/paws.git
953037e723903e2213495189c9a99eb5445ecc9a
@@ -293,7 +293,7 @@ class XRSDFitGUI(Operation): ubnd = xrsdkit.param_bound_defaults[param_nm][1] if xrsdkit.contains_param(self.inputs['param_bounds'],pop_nm,param_nm): lbnd = self.inputs['param_bounds'][pop_nm]['parameters'][param_nm][0] - lbnd = self.inputs['param_bounds'][pop_nm]['parameters'][param_nm][1] + ubnd = self.inputs['param_bounds'][pop_nm]['parameters'][param_nm][1] # TODO: the bounds entries need to be connected to DoubleVars. pbnde1.insert(0,str(lbnd)) pbnde2.insert(0,str(ubnd))
paws/core/operations/PROCESSING/FITTING/XRSDFitGUI.py
ReplaceText(target='ubnd' @(296,16)->(296,20))
class XRSDFitGUI(Operation): ubnd = xrsdkit.param_bound_defaults[param_nm][1] if xrsdkit.contains_param(self.inputs['param_bounds'],pop_nm,param_nm): lbnd = self.inputs['param_bounds'][pop_nm]['parameters'][param_nm][0] lbnd = self.inputs['param_bounds'][pop_nm]['parameters'][param_nm][1] # TODO: the bounds entries need to be connected to DoubleVars. pbnde1.insert(0,str(lbnd)) pbnde2.insert(0,str(ubnd))
class XRSDFitGUI(Operation): ubnd = xrsdkit.param_bound_defaults[param_nm][1] if xrsdkit.contains_param(self.inputs['param_bounds'],pop_nm,param_nm): lbnd = self.inputs['param_bounds'][pop_nm]['parameters'][param_nm][0] ubnd = self.inputs['param_bounds'][pop_nm]['parameters'][param_nm][1] # TODO: the bounds entries need to be connected to DoubleVars. pbnde1.insert(0,str(lbnd)) pbnde2.insert(0,str(ubnd))
319
https://:@github.com/PyFilesystem/pyfilesystem2.git
cd1a973dd80e4083502db51844981f3457d13760
@@ -258,7 +258,7 @@ class OSFS(FS): with convert_os_errors("getinfo", path): _stat = os.stat(fsencode(sys_path)) if "lstat" in namespaces: - _stat = os.lstat(fsencode(sys_path)) + _lstat = os.lstat(fsencode(sys_path)) info = { "basic": {"name": basename(_path), "is_dir": stat.S_ISDIR(_stat.st_mode)}
fs/osfs.py
ReplaceText(target='_lstat' @(261,16)->(261,21))
class OSFS(FS): with convert_os_errors("getinfo", path): _stat = os.stat(fsencode(sys_path)) if "lstat" in namespaces: _stat = os.lstat(fsencode(sys_path)) info = { "basic": {"name": basename(_path), "is_dir": stat.S_ISDIR(_stat.st_mode)}
class OSFS(FS): with convert_os_errors("getinfo", path): _stat = os.stat(fsencode(sys_path)) if "lstat" in namespaces: _lstat = os.lstat(fsencode(sys_path)) info = { "basic": {"name": basename(_path), "is_dir": stat.S_ISDIR(_stat.st_mode)}
320
https://:@github.com/kevinzg/facebook-scraper.git
c11dffbc1beef25271fb5bc6d2aa3aeb5b2079aa
@@ -83,7 +83,7 @@ def _get_posts(path, pages=10, timeout=5, sleep=0, credentials=None, extra_info= yield post pages -= 1 - if pages == 0: + if pages <= 0: return cursor = _find_cursor(cursor_blob)
facebook_scraper.py
ReplaceText(target='<=' @(86,17)->(86,19))
def _get_posts(path, pages=10, timeout=5, sleep=0, credentials=None, extra_info= yield post pages -= 1 if pages == 0: return cursor = _find_cursor(cursor_blob)
def _get_posts(path, pages=10, timeout=5, sleep=0, credentials=None, extra_info= yield post pages -= 1 if pages <= 0: return cursor = _find_cursor(cursor_blob)
321
https://:@github.com/linkedin/naarad.git
897858ba0d80fb74bbad40bfc8f96b0f59b0900e
@@ -75,10 +75,10 @@ class Report(object): for metric in self.metric_list: metric_stats = [] metric_stats_file, summary_stats, metric_plots, correlated_plots = self.discover_metric_data(self.output_directory, metric) - if metric_stats_file != '' and len(metric_plots) > 0: + if metric_stats_file != '' or len(metric_plots) > 0: metric_stats = self.get_summary_table(metric_stats_file) metric_html = template_environment.get_template(self.report_templates['header']).render(custom_javascript_includes=["http://www.kryogenix.org/code/browser/sorttable/sorttable.js"]) metric_html += template_environment.get_template(self.report_templates['metric']).render(metric_stats=metric_stats, metric_plots=metric_plots, correlated_plots=correlated_plots, metric=metric) metric_html += template_environment.get_template(self.report_templates['footer']).render() - with open(os.path.join(self.output_directory, metric + '_report.html'),'w') as metric_report: + with open(os.path.join(self.output_directory, metric + '_report.html'), 'w') as metric_report: metric_report.write(metric_html)
src/naarad/reporting/report.py
ReplaceText(target='or' @(78,33)->(78,36))
class Report(object): for metric in self.metric_list: metric_stats = [] metric_stats_file, summary_stats, metric_plots, correlated_plots = self.discover_metric_data(self.output_directory, metric) if metric_stats_file != '' and len(metric_plots) > 0: metric_stats = self.get_summary_table(metric_stats_file) metric_html = template_environment.get_template(self.report_templates['header']).render(custom_javascript_includes=["http://www.kryogenix.org/code/browser/sorttable/sorttable.js"]) metric_html += template_environment.get_template(self.report_templates['metric']).render(metric_stats=metric_stats, metric_plots=metric_plots, correlated_plots=correlated_plots, metric=metric) metric_html += template_environment.get_template(self.report_templates['footer']).render() with open(os.path.join(self.output_directory, metric + '_report.html'),'w') as metric_report: metric_report.write(metric_html)
class Report(object): for metric in self.metric_list: metric_stats = [] metric_stats_file, summary_stats, metric_plots, correlated_plots = self.discover_metric_data(self.output_directory, metric) if metric_stats_file != '' or len(metric_plots) > 0: metric_stats = self.get_summary_table(metric_stats_file) metric_html = template_environment.get_template(self.report_templates['header']).render(custom_javascript_includes=["http://www.kryogenix.org/code/browser/sorttable/sorttable.js"]) metric_html += template_environment.get_template(self.report_templates['metric']).render(metric_stats=metric_stats, metric_plots=metric_plots, correlated_plots=correlated_plots, metric=metric) metric_html += template_environment.get_template(self.report_templates['footer']).render() with open(os.path.join(self.output_directory, metric + '_report.html'), 'w') as metric_report: metric_report.write(metric_html)
322
https://:@github.com/linkedin/naarad.git
74c5928b9c26fb7bd708fb9480dd2014b4305b89
@@ -67,7 +67,7 @@ def graph_data(list_of_plots, output_directory, output_filename): plot_count = len(plots) if plot_count == 0: - return True, None + return False, None graph_height, graph_width, graph_title = get_graph_metadata(list_of_plots)
src/naarad/graphing/matplotlib_naarad.py
ReplaceText(target='False' @(70,11)->(70,15))
def graph_data(list_of_plots, output_directory, output_filename): plot_count = len(plots) if plot_count == 0: return True, None graph_height, graph_width, graph_title = get_graph_metadata(list_of_plots)
def graph_data(list_of_plots, output_directory, output_filename): plot_count = len(plots) if plot_count == 0: return False, None graph_height, graph_width, graph_title = get_graph_metadata(list_of_plots)
323
https://:@github.com/linkedin/naarad.git
fa8753e74e301602fd50281ef36bc13cde421ac2
@@ -204,7 +204,7 @@ class Metric(object): if i+1 in groupby_idxes: continue else: - out_csv = self.get_csv(groupby_names, self.columns[i]) + out_csv = self.get_csv(self.columns[i], groupby_names) if out_csv in data: data[out_csv].append(ts + ',' + words[i+1]) else:
src/naarad/metrics/metric.py
ArgSwap(idxs=0<->1 @(207,26)->(207,38))
class Metric(object): if i+1 in groupby_idxes: continue else: out_csv = self.get_csv(groupby_names, self.columns[i]) if out_csv in data: data[out_csv].append(ts + ',' + words[i+1]) else:
class Metric(object): if i+1 in groupby_idxes: continue else: out_csv = self.get_csv(self.columns[i], groupby_names) if out_csv in data: data[out_csv].append(ts + ',' + words[i+1]) else:
324
https://:@gitlab.com/mailman/postorius.git
308434aa505637da8275150484943b2442bc4b3c
@@ -232,6 +232,6 @@ class ListMembersTest(ViewTestCase): {'q': 'not_a_member'}) self.assertEqual(response.status_code, 200) self.assertEqual(len(response.context['members']), 0) - self.assertNotContains(response, member_2.email) + self.assertNotContains(response, member_1.email) self.assertNotContains(response, member_2.email)
src/postorius/tests/mailman_api_tests/test_list_members.py
ReplaceText(target='member_1' @(235,41)->(235,49))
class ListMembersTest(ViewTestCase): {'q': 'not_a_member'}) self.assertEqual(response.status_code, 200) self.assertEqual(len(response.context['members']), 0) self.assertNotContains(response, member_2.email) self.assertNotContains(response, member_2.email)
class ListMembersTest(ViewTestCase): {'q': 'not_a_member'}) self.assertEqual(response.status_code, 200) self.assertEqual(len(response.context['members']), 0) self.assertNotContains(response, member_1.email) self.assertNotContains(response, member_2.email)
325
https://:@github.com/crsmithdev/arrow.git
fa5bce04765198071c17fa2ee889c16b5dbe6377
@@ -94,7 +94,7 @@ class DateTimeFormatter(object): tz = dateutil_tz.tzutc() if dt.tzinfo is None else dt.tzinfo total_minutes = int(util.total_seconds(tz.utcoffset(dt)) / 60) - sign = '+' if total_minutes > 0 else '-' + sign = '+' if total_minutes >= 0 else '-' total_minutes = abs(total_minutes) hour, minute = divmod(total_minutes, 60)
arrow/formatter.py
ReplaceText(target='>=' @(97,40)->(97,41))
class DateTimeFormatter(object): tz = dateutil_tz.tzutc() if dt.tzinfo is None else dt.tzinfo total_minutes = int(util.total_seconds(tz.utcoffset(dt)) / 60) sign = '+' if total_minutes > 0 else '-' total_minutes = abs(total_minutes) hour, minute = divmod(total_minutes, 60)
class DateTimeFormatter(object): tz = dateutil_tz.tzutc() if dt.tzinfo is None else dt.tzinfo total_minutes = int(util.total_seconds(tz.utcoffset(dt)) / 60) sign = '+' if total_minutes >= 0 else '-' total_minutes = abs(total_minutes) hour, minute = divmod(total_minutes, 60)
326
https://:@github.com/AICoE/log-anomaly-detector.git
cd462c169c77152ae10cf3b0b99adfa51d53c043
@@ -37,4 +37,4 @@ class SOMPYModel(BaseModel): dist = np.linalg.norm(self.model[x][y] - log) if dist < dist_smallest: dist_smallest = dist - return dist + return dist_smallest
anomaly_detector/model/sompy_model.py
ReplaceText(target='dist_smallest' @(40,15)->(40,19))
class SOMPYModel(BaseModel): dist = np.linalg.norm(self.model[x][y] - log) if dist < dist_smallest: dist_smallest = dist return dist
class SOMPYModel(BaseModel): dist = np.linalg.norm(self.model[x][y] - log) if dist < dist_smallest: dist_smallest = dist return dist_smallest
327
https://:@github.com/ksmet1977/luxpy.git
6b6e6f7dd1dd257c8394dcd439f2bbb39be46fef
@@ -896,7 +896,7 @@ def plot_spectrum_colors(spd = None, spdmax = None,\ cmfs = _CMF[cieobs]['bar'] else: cmfs = cieobs - cmfs = cmfs[:,cmfs[1:].sum(axis=1)>0] # avoid div by zero in xyz-to-Yxy conversion + cmfs = cmfs[:,cmfs[1:].sum(axis=0)>0] # avoid div by zero in xyz-to-Yxy conversion wavs = cmfs[0:1].T SL = cmfs[1:4].T
luxpy/color/utils/plotters.py
ReplaceText(target='0' @(899,36)->(899,37))
def plot_spectrum_colors(spd = None, spdmax = None,\ cmfs = _CMF[cieobs]['bar'] else: cmfs = cieobs cmfs = cmfs[:,cmfs[1:].sum(axis=1)>0] # avoid div by zero in xyz-to-Yxy conversion wavs = cmfs[0:1].T SL = cmfs[1:4].T
def plot_spectrum_colors(spd = None, spdmax = None,\ cmfs = _CMF[cieobs]['bar'] else: cmfs = cieobs cmfs = cmfs[:,cmfs[1:].sum(axis=0)>0] # avoid div by zero in xyz-to-Yxy conversion wavs = cmfs[0:1].T SL = cmfs[1:4].T
328
https://:@github.com/melexis/sphinx-traceability-extension.git
64a00adbbbec4088a6e0bb88b1ed43e26c2776bd
@@ -760,7 +760,7 @@ def process_item_nodes(app, doctree, fromdocname): for source in node['sources']: for target in node['targets']: try: - env.traceability_collection.add_relation(target, node['type'], source) + env.traceability_collection.add_relation(source, node['type'], target) except TraceabilityException as err: report_warning(env, err, env.docname, self.lineno) # The ItemLink node has no final representation, so is removed from the tree
mlx/traceability.py
ArgSwap(idxs=0<->2 @(763,20)->(763,60))
def process_item_nodes(app, doctree, fromdocname): for source in node['sources']: for target in node['targets']: try: env.traceability_collection.add_relation(target, node['type'], source) except TraceabilityException as err: report_warning(env, err, env.docname, self.lineno) # The ItemLink node has no final representation, so is removed from the tree
def process_item_nodes(app, doctree, fromdocname): for source in node['sources']: for target in node['targets']: try: env.traceability_collection.add_relation(source, node['type'], target) except TraceabilityException as err: report_warning(env, err, env.docname, self.lineno) # The ItemLink node has no final representation, so is removed from the tree
329
https://:@github.com/rocky/python3-trepan.git
2ff3e8439122926251ef9e7e4b7b89018feb9892
@@ -47,7 +47,7 @@ and recolor all source code output.""" pass def run(self, args): - if len(args) >= 1 and 'reset' == args[0]: + if len(args) > 1 and 'reset' == args[0]: highlight_type = self.get_highlight_type(args[1]) if not highlight_type: return clear_file_format_cache()
trepan/processor/command/set_subcmd/highlight.py
ReplaceText(target='>' @(50,21)->(50,23))
and recolor all source code output.""" pass def run(self, args): if len(args) >= 1 and 'reset' == args[0]: highlight_type = self.get_highlight_type(args[1]) if not highlight_type: return clear_file_format_cache()
and recolor all source code output.""" pass def run(self, args): if len(args) > 1 and 'reset' == args[0]: highlight_type = self.get_highlight_type(args[1]) if not highlight_type: return clear_file_format_cache()
330
https://:@github.com/rocky/python3-trepan.git
7fe5f2be86cf60c41b67ea4a6d24990b06dd536a
@@ -4,7 +4,7 @@ from fn_helper import strarray_setup, compare_output class TestSkip(unittest.TestCase): - @unittest.skipIf('TRAVIS' not in os.environ, + @unittest.skipIf('TRAVIS' in os.environ, "FIXME: figure out why this doesn't work in travis") def test_skip(self):
test/functional/test-skip.py
ReplaceText(target=' in ' @(7,29)->(7,37))
from fn_helper import strarray_setup, compare_output class TestSkip(unittest.TestCase): @unittest.skipIf('TRAVIS' not in os.environ, "FIXME: figure out why this doesn't work in travis") def test_skip(self):
from fn_helper import strarray_setup, compare_output class TestSkip(unittest.TestCase): @unittest.skipIf('TRAVIS' in os.environ, "FIXME: figure out why this doesn't work in travis") def test_skip(self):
331
https://:@github.com/rocky/python3-trepan.git
ce7705f666154604fb580ca56cd22ec7cc6eae69
@@ -183,7 +183,7 @@ dictionary that gets fed to trepan.Debugger.core.start(). Parameter "step_ignore" specifies how many line events to ignore after the debug() call. 0 means don't even wait for the debug() call to finish. """ - if isinstance(Mdebugger.debugger_obj, Mdebugger.Trepan): + if not isinstance(Mdebugger.debugger_obj, Mdebugger.Trepan): Mdebugger.debugger_obj = Mdebugger.Trepan(dbg_opts) Mdebugger.debugger_obj.core.add_ignore(debug, stop) pass
trepan/api.py
ReplaceText(target='not ' @(186,7)->(186,7))
dictionary that gets fed to trepan.Debugger.core.start(). Parameter "step_ignore" specifies how many line events to ignore after the debug() call. 0 means don't even wait for the debug() call to finish. """ if isinstance(Mdebugger.debugger_obj, Mdebugger.Trepan): Mdebugger.debugger_obj = Mdebugger.Trepan(dbg_opts) Mdebugger.debugger_obj.core.add_ignore(debug, stop) pass
dictionary that gets fed to trepan.Debugger.core.start(). Parameter "step_ignore" specifies how many line events to ignore after the debug() call. 0 means don't even wait for the debug() call to finish. """ if not isinstance(Mdebugger.debugger_obj, Mdebugger.Trepan): Mdebugger.debugger_obj = Mdebugger.Trepan(dbg_opts) Mdebugger.debugger_obj.core.add_ignore(debug, stop) pass
332
https://:@github.com/rocky/python3-trepan.git
342c05260ac86fcc4e6d711a3f579c71d1d53d64
@@ -116,7 +116,7 @@ See also: pass sys_version = version_info.major + (version_info.minor / 10.0) - if len(args) >= 1 and args[1] == '.': + if len(args) >= 1 and args[0] == '.': try: if pretty: deparsed = deparse_code(sys_version, co)
trepan/processor/command/deparse.py
ReplaceText(target='0' @(119,35)->(119,36))
See also: pass sys_version = version_info.major + (version_info.minor / 10.0) if len(args) >= 1 and args[1] == '.': try: if pretty: deparsed = deparse_code(sys_version, co)
See also: pass sys_version = version_info.major + (version_info.minor / 10.0) if len(args) >= 1 and args[0] == '.': try: if pretty: deparsed = deparse_code(sys_version, co)
333
https://:@github.com/kanaka/websockify.git
0da91c7fdb3a49873121594e1820eef7ac078595
@@ -225,7 +225,7 @@ Sec-WebSocket-Accept: %s\r payload_len = len(buf) if payload_len <= 125: header = struct.pack('>BB', b1, payload_len) - elif payload_len > 125 and payload_len <= 65536: + elif payload_len > 125 and payload_len < 65536: header = struct.pack('>BBH', b1, 126, payload_len) elif payload_len >= 65536: header = struct.pack('>BBQ', b1, 127, payload_len)
websocket.py
ReplaceText(target='<' @(228,47)->(228,49))
Sec-WebSocket-Accept: %s\r payload_len = len(buf) if payload_len <= 125: header = struct.pack('>BB', b1, payload_len) elif payload_len > 125 and payload_len <= 65536: header = struct.pack('>BBH', b1, 126, payload_len) elif payload_len >= 65536: header = struct.pack('>BBQ', b1, 127, payload_len)
Sec-WebSocket-Accept: %s\r payload_len = len(buf) if payload_len <= 125: header = struct.pack('>BB', b1, payload_len) elif payload_len > 125 and payload_len < 65536: header = struct.pack('>BBH', b1, 126, payload_len) elif payload_len >= 65536: header = struct.pack('>BBQ', b1, 127, payload_len)
334
https://:@github.com/annoviko/pyclustering.git
70597e34bed02d7c3cb4a3d2e2ed6b30cd6cb3df
@@ -320,7 +320,7 @@ class hysteresis_network(network): if (collect_dynamic is False): dyn_state.append(self._states); - dyn_time.append(t); + dyn_time.append(time); return hysteresis_dynamic(dyn_state, dyn_time);
pyclustering/nnet/hysteresis.py
ReplaceText(target='time' @(323,28)->(323,29))
class hysteresis_network(network): if (collect_dynamic is False): dyn_state.append(self._states); dyn_time.append(t); return hysteresis_dynamic(dyn_state, dyn_time);
class hysteresis_network(network): if (collect_dynamic is False): dyn_state.append(self._states); dyn_time.append(time); return hysteresis_dynamic(dyn_state, dyn_time);
335
https://:@github.com/annoviko/pyclustering.git
7e1bf5ed9cc2817c00c7e5e216adb4cc9fa8fc49
@@ -123,7 +123,7 @@ class ttsas(bsas): index_cluster, distance = self._find_nearest_cluster(point); - if distance < self._threshold: + if distance <= self._threshold: self.__append_to_cluster(index_cluster, index_point, point); elif distance > self._threshold2: self.__allocate_cluster(index_point, point);
pyclustering/cluster/ttsas.py
ReplaceText(target='<=' @(126,20)->(126,21))
class ttsas(bsas): index_cluster, distance = self._find_nearest_cluster(point); if distance < self._threshold: self.__append_to_cluster(index_cluster, index_point, point); elif distance > self._threshold2: self.__allocate_cluster(index_point, point);
class ttsas(bsas): index_cluster, distance = self._find_nearest_cluster(point); if distance <= self._threshold: self.__append_to_cluster(index_cluster, index_point, point); elif distance > self._threshold2: self.__allocate_cluster(index_point, point);
336
https://:@github.com/annoviko/pyclustering.git
cdb0ca92c076282084f54816d681f7d0a1588066
@@ -64,7 +64,7 @@ class XmeansTestTemplates: assertion.eq(expected_wce, wce) if expected_cluster_length is not None: - assertion.eq(len(centers), len(expected_cluster_length)) + assertion.eq(len(expected_cluster_length), len(centers)) obtained_cluster_sizes.sort() expected_cluster_length.sort()
pyclustering/cluster/tests/xmeans_templates.py
ArgSwap(idxs=0<->1 @(67,12)->(67,24))
class XmeansTestTemplates: assertion.eq(expected_wce, wce) if expected_cluster_length is not None: assertion.eq(len(centers), len(expected_cluster_length)) obtained_cluster_sizes.sort() expected_cluster_length.sort()
class XmeansTestTemplates: assertion.eq(expected_wce, wce) if expected_cluster_length is not None: assertion.eq(len(expected_cluster_length), len(centers)) obtained_cluster_sizes.sort() expected_cluster_length.sort()
337
https://:@github.com/evolbioinfo/pastml.git
06384fd264d834bff88efdc6bf70a098b06f307d
@@ -232,7 +232,7 @@ def parsimonious_acr(tree, feature, prediction_method, states, num_nodes, num_ti .format(feature, num_steps)) num_scenarios, unresolved_nodes = choose_parsimonious_states(tree, feature) logger.debug('{} node{} unresolved ({:.2f}%) for {}, leading to {:g} ancestral scenario{}.' - .format(unresolved_nodes, 's are' if unresolved_nodes > 1 else ' is', + .format(unresolved_nodes, 's are' if unresolved_nodes != 1 else ' is', unresolved_nodes * 100 / num_nodes, feature, num_scenarios, 's' if num_scenarios > 1 else ''))
pastml/parsimony.py
ReplaceText(target='!=' @(235,71)->(235,72))
def parsimonious_acr(tree, feature, prediction_method, states, num_nodes, num_ti .format(feature, num_steps)) num_scenarios, unresolved_nodes = choose_parsimonious_states(tree, feature) logger.debug('{} node{} unresolved ({:.2f}%) for {}, leading to {:g} ancestral scenario{}.' .format(unresolved_nodes, 's are' if unresolved_nodes > 1 else ' is', unresolved_nodes * 100 / num_nodes, feature, num_scenarios, 's' if num_scenarios > 1 else ''))
def parsimonious_acr(tree, feature, prediction_method, states, num_nodes, num_ti .format(feature, num_steps)) num_scenarios, unresolved_nodes = choose_parsimonious_states(tree, feature) logger.debug('{} node{} unresolved ({:.2f}%) for {}, leading to {:g} ancestral scenario{}.' .format(unresolved_nodes, 's are' if unresolved_nodes != 1 else ' is', unresolved_nodes * 100 / num_nodes, feature, num_scenarios, 's' if num_scenarios > 1 else ''))
338
https://:@github.com/jirifilip/pyARC.git
e18a6c280f30bc753192bfa83f311ce36915aca4
@@ -42,7 +42,7 @@ class TestClassAssociationRule(unittest.TestCase): sorted_cars = sorted([car1, car2, car3, car4], reverse=True) assert car1 < car2 - assert car2 < car3 + assert car2 > car3 assert car3 < car2 assert car4 > car3 assert car1.antecedent <= transaction1
cba/test/test_class_association_rule.py
ReplaceText(target='>' @(45,20)->(45,21))
class TestClassAssociationRule(unittest.TestCase): sorted_cars = sorted([car1, car2, car3, car4], reverse=True) assert car1 < car2 assert car2 < car3 assert car3 < car2 assert car4 > car3 assert car1.antecedent <= transaction1
class TestClassAssociationRule(unittest.TestCase): sorted_cars = sorted([car1, car2, car3, car4], reverse=True) assert car1 < car2 assert car2 > car3 assert car3 < car2 assert car4 > car3 assert car1.antecedent <= transaction1
339
https://:@github.com/oblalex/verboselib.git
5ec91a09ae9f0674513f4953111009b93eaad74a
@@ -123,4 +123,4 @@ class VerboselibTranslationTestCase(unittest.TestCase): t1.merge(t2) self.assertEqual(t1.ugettext("Hello"), "Вітаю") - self.assertEqual(t2.ugettext("Good bye"), "До зустрічі") + self.assertEqual(t1.ugettext("Good bye"), "До зустрічі")
tests/test_package.py
ReplaceText(target='t1' @(126,25)->(126,27))
class VerboselibTranslationTestCase(unittest.TestCase): t1.merge(t2) self.assertEqual(t1.ugettext("Hello"), "Вітаю") self.assertEqual(t2.ugettext("Good bye"), "До зустрічі")
class VerboselibTranslationTestCase(unittest.TestCase): t1.merge(t2) self.assertEqual(t1.ugettext("Hello"), "Вітаю") self.assertEqual(t1.ugettext("Good bye"), "До зустрічі")
340
https://:@github.com/lexndru/hap.git
5ef18f88572400983578d8723663562329066779
@@ -87,7 +87,7 @@ class Cache(object): tuple: Boolean for success read and string for size or error. """ - if len(cache) == 0: + if len(cache_path) == 0: return False, "missing cache path" if len(cache) == 0: return False, "missing cache data"
hap/cache.py
ReplaceText(target='cache_path' @(90,15)->(90,20))
class Cache(object): tuple: Boolean for success read and string for size or error. """ if len(cache) == 0: return False, "missing cache path" if len(cache) == 0: return False, "missing cache data"
class Cache(object): tuple: Boolean for success read and string for size or error. """ if len(cache_path) == 0: return False, "missing cache path" if len(cache) == 0: return False, "missing cache data"
341
https://:@github.com/littlezz/island-backup.git
fed75aebccfa31e418e351492618a2d50c15b9cb
@@ -103,7 +103,7 @@ class ImageManager: print('this is {} in busying'.format(len(self.busying))) urls = [] for i, url in enumerate(self.busying): - if i > 3: + if i >= 3: break urls.append(url)
main.py
ReplaceText(target='>=' @(106,17)->(106,18))
class ImageManager: print('this is {} in busying'.format(len(self.busying))) urls = [] for i, url in enumerate(self.busying): if i > 3: break urls.append(url)
class ImageManager: print('this is {} in busying'.format(len(self.busying))) urls = [] for i, url in enumerate(self.busying): if i >= 3: break urls.append(url)
342
https://:@github.com/parrt/dtreeviz.git
aa5b4811af5c5a5c9620705fc44ffd9e48377664
@@ -1121,7 +1121,7 @@ def draw_legend(shadow_tree, target_name, filename, colors=None): boxes = [] for i, c in enumerate(class_values): box = patches.Rectangle((0, 0), 20, 10, linewidth=.4, edgecolor=colors['rect_edge'], - facecolor=color_map[c], label=class_names[c]) + facecolor=color_map[c], label=class_names[i]) boxes.append(box) fig, ax = plt.subplots(1, 1, figsize=(1,1))
dtreeviz/trees.py
ReplaceText(target='i' @(1124,74)->(1124,75))
def draw_legend(shadow_tree, target_name, filename, colors=None): boxes = [] for i, c in enumerate(class_values): box = patches.Rectangle((0, 0), 20, 10, linewidth=.4, edgecolor=colors['rect_edge'], facecolor=color_map[c], label=class_names[c]) boxes.append(box) fig, ax = plt.subplots(1, 1, figsize=(1,1))
def draw_legend(shadow_tree, target_name, filename, colors=None): boxes = [] for i, c in enumerate(class_values): box = patches.Rectangle((0, 0), 20, 10, linewidth=.4, edgecolor=colors['rect_edge'], facecolor=color_map[c], label=class_names[i]) boxes.append(box) fig, ax = plt.subplots(1, 1, figsize=(1,1))
343
https://:@github.com/parrt/dtreeviz.git
01cc13f495decbd6f8f716d7be586e02864f3434
@@ -809,7 +809,7 @@ def dtreeviz(tree_model: (tree.DecisionTreeRegressor, tree.DecisionTreeClassifie lcolor = colors['highlight'] lpw = "1.2" if node.right.id in highlight_path: - lcolor = colors['highlight'] + rcolor = colors['highlight'] rpw = "1.2" edges.append( f'{nname} -> {left_node_name} [penwidth={lpw} color="{lcolor}" label=<{llabel}>]' ) edges.append( f'{nname} -> {right_node_name} [penwidth={rpw} color="{rcolor}" label=<{rlabel}>]' )
dtreeviz/trees.py
ReplaceText(target='rcolor' @(812,12)->(812,18))
def dtreeviz(tree_model: (tree.DecisionTreeRegressor, tree.DecisionTreeClassifie lcolor = colors['highlight'] lpw = "1.2" if node.right.id in highlight_path: lcolor = colors['highlight'] rpw = "1.2" edges.append( f'{nname} -> {left_node_name} [penwidth={lpw} color="{lcolor}" label=<{llabel}>]' ) edges.append( f'{nname} -> {right_node_name} [penwidth={rpw} color="{rcolor}" label=<{rlabel}>]' )
def dtreeviz(tree_model: (tree.DecisionTreeRegressor, tree.DecisionTreeClassifie lcolor = colors['highlight'] lpw = "1.2" if node.right.id in highlight_path: rcolor = colors['highlight'] rpw = "1.2" edges.append( f'{nname} -> {left_node_name} [penwidth={lpw} color="{lcolor}" label=<{llabel}>]' ) edges.append( f'{nname} -> {right_node_name} [penwidth={rpw} color="{rcolor}" label=<{rlabel}>]' )
344
https://:@github.com/4teamwork/ftw.workspace.git
b12970101f5ca213e4604c2c3cf2f767f911b71e
@@ -75,7 +75,7 @@ class AssignableUsersVocabulary(object): if user not in groups: groups.add(user) - if getattr(aq_base(workspace), '__ac_local_roles_block__', None): + if getattr(aq_base(context), '__ac_local_roles_block__', None): cont = False else: context = aq_parent(context)
ftw/workspace/vocabularies.py
ReplaceText(target='context' @(78,31)->(78,40))
class AssignableUsersVocabulary(object): if user not in groups: groups.add(user) if getattr(aq_base(workspace), '__ac_local_roles_block__', None): cont = False else: context = aq_parent(context)
class AssignableUsersVocabulary(object): if user not in groups: groups.add(user) if getattr(aq_base(context), '__ac_local_roles_block__', None): cont = False else: context = aq_parent(context)
345
https://:@github.com/regulusweb/wagtail-extensions.git
ea388649a0c6dc6fbc1ce018d767c8b583486523
@@ -74,7 +74,7 @@ class ContactDetailsSetting(BaseSetting): today = date.today() cache_key = self.get_opening_today_cache_key(today) times = cache.get(cache_key) - if times is not None: + if times is None: opening_times = self.primary_opening_times if opening_times: specific_times = utils.first_true(opening_times, lambda x: x.get('date') == today)
wagtail_extensions/models.py
ReplaceText(target=' is ' @(77,16)->(77,24))
class ContactDetailsSetting(BaseSetting): today = date.today() cache_key = self.get_opening_today_cache_key(today) times = cache.get(cache_key) if times is not None: opening_times = self.primary_opening_times if opening_times: specific_times = utils.first_true(opening_times, lambda x: x.get('date') == today)
class ContactDetailsSetting(BaseSetting): today = date.today() cache_key = self.get_opening_today_cache_key(today) times = cache.get(cache_key) if times is None: opening_times = self.primary_opening_times if opening_times: specific_times = utils.first_true(opening_times, lambda x: x.get('date') == today)
346
https://:@github.com/tjcsl/cslbot.git
eaa1165f7ceb19b8e98828fea2894d275ffe5743
@@ -394,7 +394,7 @@ class MyHandler(): elif cmd[0] == "get": if cmd[1] == "disabled" and cmd[2] == "modules": send(str(self.disabled_mods)) - if cmd[2] == "enabled" and cmd[2] == "modules": + if cmd[1] == "enabled" and cmd[2] == "modules": send(str([i for i in self.modules if i not in self.disabled_mods])) def handle_msg(self, msgtype, c, e):
handler.py
ReplaceText(target='1' @(397,19)->(397,20))
class MyHandler(): elif cmd[0] == "get": if cmd[1] == "disabled" and cmd[2] == "modules": send(str(self.disabled_mods)) if cmd[2] == "enabled" and cmd[2] == "modules": send(str([i for i in self.modules if i not in self.disabled_mods])) def handle_msg(self, msgtype, c, e):
class MyHandler(): elif cmd[0] == "get": if cmd[1] == "disabled" and cmd[2] == "modules": send(str(self.disabled_mods)) if cmd[1] == "enabled" and cmd[2] == "modules": send(str([i for i in self.modules if i not in self.disabled_mods])) def handle_msg(self, msgtype, c, e):
347
https://:@github.com/tjcsl/cslbot.git
6c801ad70e0a9d1a963b9b560f9c654616e64a3b
@@ -260,7 +260,7 @@ class BotHandler(): if self.log_to_ctrlchan: # somewhat hacky fix if target != CTRLCHAN: - self.connection.send_raw(("PRIVMSG %s :(%s) <%s> %s" % (CTRLCHAN, target, nick, log))\ + self.connection.send_raw(("PRIVMSG %s :(%s) <%s> %s" % (CTRLCHAN, target, nick, msg))\ .replace("\n", "").replace("\r", "")) self.logs[target].append([day, log]) self.logfiles[target].write(log)
handler.py
ReplaceText(target='msg' @(263,96)->(263,99))
class BotHandler(): if self.log_to_ctrlchan: # somewhat hacky fix if target != CTRLCHAN: self.connection.send_raw(("PRIVMSG %s :(%s) <%s> %s" % (CTRLCHAN, target, nick, log))\ .replace("\n", "").replace("\r", "")) self.logs[target].append([day, log]) self.logfiles[target].write(log)
class BotHandler(): if self.log_to_ctrlchan: # somewhat hacky fix if target != CTRLCHAN: self.connection.send_raw(("PRIVMSG %s :(%s) <%s> %s" % (CTRLCHAN, target, nick, msg))\ .replace("\n", "").replace("\r", "")) self.logs[target].append([day, log]) self.logfiles[target].write(log)
348
https://:@github.com/tjcsl/cslbot.git
b5c181736ff1adc6b665d2d4a80bd6141aaa549e
@@ -331,7 +331,7 @@ class BotHandler(): return if cmdargs[0] != '#': cmdargs = '#' + cmdargs - if cmdargs in self.channels and len(cmd) > 0 and cmd[1] != "force": + if cmdargs in self.channels or len(cmd) > 0 and cmd[1] != "force": send("%s is already a member of %s" % (NICK, cmdargs)) return c.join(cmd[0])
handler.py
ReplaceText(target='or' @(334,36)->(334,39))
class BotHandler(): return if cmdargs[0] != '#': cmdargs = '#' + cmdargs if cmdargs in self.channels and len(cmd) > 0 and cmd[1] != "force": send("%s is already a member of %s" % (NICK, cmdargs)) return c.join(cmd[0])
class BotHandler(): return if cmdargs[0] != '#': cmdargs = '#' + cmdargs if cmdargs in self.channels or len(cmd) > 0 and cmd[1] != "force": send("%s is already a member of %s" % (NICK, cmdargs)) return c.join(cmd[0])
349
https://:@github.com/tjcsl/cslbot.git
20dab902837bb40599cb34afe152dfc780f2854e
@@ -315,7 +315,7 @@ class BotHandler(): # -pub # -private #log to sqlite logger - self.logger.log(target, nick, isop, msg, msgtype) + self.logger.log(nick, target, isop, msg, msgtype) if self.log_to_ctrlchan: ctrlchan = self.config['core']['ctrlchan']
handler.py
ArgSwap(idxs=0<->1 @(318,8)->(318,23))
class BotHandler(): # -pub # -private #log to sqlite logger self.logger.log(target, nick, isop, msg, msgtype) if self.log_to_ctrlchan: ctrlchan = self.config['core']['ctrlchan']
class BotHandler(): # -pub # -private #log to sqlite logger self.logger.log(nick, target, isop, msg, msgtype) if self.log_to_ctrlchan: ctrlchan = self.config['core']['ctrlchan']
350
https://:@github.com/tjcsl/cslbot.git
7b544654a37dd0ca467157c76aaa51bb6e9a73e8
@@ -442,7 +442,7 @@ class BotHandler(): if cmd_obj.is_limited() and self.abusecheck(send, nick, cmd_obj.limit, msgtype, cmd[len(cmdchar):]): return args = self.do_args(cmd_obj.args, send, nick, target, e.source, c, cmd_name, msgtype) - cmd_obj.run(send, cmdargs, args, cmd_name, target, nick, self.db.get()) + cmd_obj.run(send, cmdargs, args, cmd_name, nick, target, self.db.get()) # special commands if cmd.startswith(cmdchar): if cmd[len(cmdchar):] == 'reload':
handler.py
ArgSwap(idxs=4<->5 @(445,16)->(445,27))
class BotHandler(): if cmd_obj.is_limited() and self.abusecheck(send, nick, cmd_obj.limit, msgtype, cmd[len(cmdchar):]): return args = self.do_args(cmd_obj.args, send, nick, target, e.source, c, cmd_name, msgtype) cmd_obj.run(send, cmdargs, args, cmd_name, target, nick, self.db.get()) # special commands if cmd.startswith(cmdchar): if cmd[len(cmdchar):] == 'reload':
class BotHandler(): if cmd_obj.is_limited() and self.abusecheck(send, nick, cmd_obj.limit, msgtype, cmd[len(cmdchar):]): return args = self.do_args(cmd_obj.args, send, nick, target, e.source, c, cmd_name, msgtype) cmd_obj.run(send, cmdargs, args, cmd_name, nick, target, self.db.get()) # special commands if cmd.startswith(cmdchar): if cmd[len(cmdchar):] == 'reload':
351
https://:@github.com/tjcsl/cslbot.git
8d5e5ff45a32d6849e0daf38414e818b4d8e4a96
@@ -38,7 +38,7 @@ def cmd(send, msg, args): name = 'passthrough' else: name = name[4:] - names.append(i) + names.append(name) send("Current filter(s): %s" % ", ".join(names)) elif msg == 'list': send("Available filters are %s" % ", ".join(output_filters.keys()))
commands/filter.py
ReplaceText(target='name' @(41,25)->(41,26))
def cmd(send, msg, args): name = 'passthrough' else: name = name[4:] names.append(i) send("Current filter(s): %s" % ", ".join(names)) elif msg == 'list': send("Available filters are %s" % ", ".join(output_filters.keys()))
def cmd(send, msg, args): name = 'passthrough' else: name = name[4:] names.append(name) send("Current filter(s): %s" % ", ".join(names)) elif msg == 'list': send("Available filters are %s" % ", ".join(output_filters.keys()))
352
https://:@github.com/tjcsl/cslbot.git
0e38c8226ab070d321cbed3ade449c2833d0f36e
@@ -154,7 +154,7 @@ def handle_accept(handler, cmd): return "Missing argument." if not cmd[1].isdigit(): return "Not A Valid Positive Integer" - elif not handler.issues or len(handler.issues) < int(cmd[1]): + elif not handler.issues or len(handler.issues) <= int(cmd[1]): return "Not a valid issue" else: num = int(cmd[1])
helpers/control.py
ReplaceText(target='<=' @(157,51)->(157,52))
def handle_accept(handler, cmd): return "Missing argument." if not cmd[1].isdigit(): return "Not A Valid Positive Integer" elif not handler.issues or len(handler.issues) < int(cmd[1]): return "Not a valid issue" else: num = int(cmd[1])
def handle_accept(handler, cmd): return "Missing argument." if not cmd[1].isdigit(): return "Not A Valid Positive Integer" elif not handler.issues or len(handler.issues) <= int(cmd[1]): return "Not a valid issue" else: num = int(cmd[1])
353
https://:@github.com/tjcsl/cslbot.git
1694edfac9e6ee93ce648c78be52d19360b7e364
@@ -54,7 +54,7 @@ def do_add_quote(cmd, conn, isadmin, send, args): cursor = conn.execute('INSERT INTO quotes(quote, nick, submitter) VALUES(?,?,?)', (quote[0], quote[1], args['nick'])) qid = cursor.lastrowid if isadmin: - cursor.execute('UPDATE quotes SET approved=1 WHERE id=?', (qid,)) + conn.execute('UPDATE quotes SET approved=1 WHERE id=?', (qid,)) send("Added quote %d!" % qid) else: send("Quote submitted for approval.", target=args['nick'])
commands/quote.py
ReplaceText(target='conn' @(57,8)->(57,14))
def do_add_quote(cmd, conn, isadmin, send, args): cursor = conn.execute('INSERT INTO quotes(quote, nick, submitter) VALUES(?,?,?)', (quote[0], quote[1], args['nick'])) qid = cursor.lastrowid if isadmin: cursor.execute('UPDATE quotes SET approved=1 WHERE id=?', (qid,)) send("Added quote %d!" % qid) else: send("Quote submitted for approval.", target=args['nick'])
def do_add_quote(cmd, conn, isadmin, send, args): cursor = conn.execute('INSERT INTO quotes(quote, nick, submitter) VALUES(?,?,?)', (quote[0], quote[1], args['nick'])) qid = cursor.lastrowid if isadmin: conn.execute('UPDATE quotes SET approved=1 WHERE id=?', (qid,)) send("Added quote %d!" % qid) else: send("Quote submitted for approval.", target=args['nick'])
354
https://:@github.com/tjcsl/cslbot.git
aa3079c68c6bfed92fe95cf92dbed87d1f3c91d2
@@ -33,7 +33,7 @@ def handle_traceback(ex, c, target, config, source="the bot"): errtarget = ctrlchan if prettyerrors else target if prettyerrors: if name == 'CSLException': - c.privmsg(target, "%s -- %s" % (name, output)) + c.privmsg(target, "%s -- %s" % (source, output)) else: c.privmsg(target, "An %s has occured in %s. See the control channel for details." % (name, source)) c.privmsg(errtarget, '%s -- %s in %s on line %s: %s' % (source, name, trace[0], trace[1], output))
helpers/traceback.py
ReplaceText(target='source' @(36,44)->(36,48))
def handle_traceback(ex, c, target, config, source="the bot"): errtarget = ctrlchan if prettyerrors else target if prettyerrors: if name == 'CSLException': c.privmsg(target, "%s -- %s" % (name, output)) else: c.privmsg(target, "An %s has occured in %s. See the control channel for details." % (name, source)) c.privmsg(errtarget, '%s -- %s in %s on line %s: %s' % (source, name, trace[0], trace[1], output))
def handle_traceback(ex, c, target, config, source="the bot"): errtarget = ctrlchan if prettyerrors else target if prettyerrors: if name == 'CSLException': c.privmsg(target, "%s -- %s" % (source, output)) else: c.privmsg(target, "An %s has occured in %s. See the control channel for details." % (name, source)) c.privmsg(errtarget, '%s -- %s in %s on line %s: %s' % (source, name, trace[0], trace[1], output))
355
https://:@github.com/tjcsl/cslbot.git
8bd3d1038ba16c4c097b51c1bdce1a54a5fb43af
@@ -38,7 +38,7 @@ def get_definition(msg): elif not index.isdigit() or int(index) >= len(data) or int(index) == 0: output = "Invalid Index" else: - output = data[int(index)+1]['definition'] + output = data[int(index)-1]['definition'] output = output.splitlines() return ' '.join(output)
commands/urban.py
ReplaceText(target='-' @(41,32)->(41,33))
def get_definition(msg): elif not index.isdigit() or int(index) >= len(data) or int(index) == 0: output = "Invalid Index" else: output = data[int(index)+1]['definition'] output = output.splitlines() return ' '.join(output)
def get_definition(msg): elif not index.isdigit() or int(index) >= len(data) or int(index) == 0: output = "Invalid Index" else: output = data[int(index)-1]['definition'] output = output.splitlines() return ' '.join(output)
356
https://:@github.com/tjcsl/cslbot.git
a72f1944cc07392f2f1c023448bfc0eceb6cd8cd
@@ -40,7 +40,7 @@ def get_definition(msg): output = "UrbanDictionary doesn't have an answer for you." elif index is None: output = data[0]['definition'] - elif not index.isdigit() or int(index) >= len(data) or int(index) == 0: + elif not index.isdigit() or int(index) > len(data) or int(index) == 0: output = "Invalid Index" else: output = data[int(index)-1]['definition']
commands/urban.py
ReplaceText(target='>' @(43,43)->(43,45))
def get_definition(msg): output = "UrbanDictionary doesn't have an answer for you." elif index is None: output = data[0]['definition'] elif not index.isdigit() or int(index) >= len(data) or int(index) == 0: output = "Invalid Index" else: output = data[int(index)-1]['definition']
def get_definition(msg): output = "UrbanDictionary doesn't have an answer for you." elif index is None: output = data[0]['definition'] elif not index.isdigit() or int(index) > len(data) or int(index) == 0: output = "Invalid Index" else: output = data[int(index)-1]['definition']
357
https://:@github.com/tjcsl/cslbot.git
ffc2cedcd394bf7076f4e8882d7f8773fc2a529b
@@ -24,7 +24,7 @@ from helpers.command import Command def cmd(send, msg, args): """Finds a random quote from tjbash.org given search criteria """ - if len(msg) < 0: + if len(msg) == 0: url = 'http://tjbash.org/random1' else: url = 'http://tjbash.org/search?query='
commands/tjbash.py
ReplaceText(target='==' @(27,16)->(27,17))
from helpers.command import Command def cmd(send, msg, args): """Finds a random quote from tjbash.org given search criteria """ if len(msg) < 0: url = 'http://tjbash.org/random1' else: url = 'http://tjbash.org/search?query='
from helpers.command import Command def cmd(send, msg, args): """Finds a random quote from tjbash.org given search criteria """ if len(msg) == 0: url = 'http://tjbash.org/random1' else: url = 'http://tjbash.org/search?query='
358
https://:@github.com/tjcsl/cslbot.git
0a9fcb6ce10d7d7dca87496e3abb02faa1c35794
@@ -87,7 +87,7 @@ def build_markov(cursor, speaker, cmdchar, ctrlchan): def get_markov(cursor, speaker, handler, cmdchar, ctrlchan): markov = cursor.query(Babble).filter(Babble.nick == speaker).first() if not markov: - update_markov(cursor, speaker, cmdchar, ctrlchan) + update_markov(handler, speaker, cmdchar, ctrlchan) markov = cursor.query(Babble).filter(Babble.nick == speaker).first() elif time.time() - markov.time > CACHE_LIFE: handler.workers.defer(0, False, update_markov, handler, speaker, cmdchar, ctrlchan)
commands/babble.py
ReplaceText(target='handler' @(90,22)->(90,28))
def build_markov(cursor, speaker, cmdchar, ctrlchan): def get_markov(cursor, speaker, handler, cmdchar, ctrlchan): markov = cursor.query(Babble).filter(Babble.nick == speaker).first() if not markov: update_markov(cursor, speaker, cmdchar, ctrlchan) markov = cursor.query(Babble).filter(Babble.nick == speaker).first() elif time.time() - markov.time > CACHE_LIFE: handler.workers.defer(0, False, update_markov, handler, speaker, cmdchar, ctrlchan)
def build_markov(cursor, speaker, cmdchar, ctrlchan): def get_markov(cursor, speaker, handler, cmdchar, ctrlchan): markov = cursor.query(Babble).filter(Babble.nick == speaker).first() if not markov: update_markov(handler, speaker, cmdchar, ctrlchan) markov = cursor.query(Babble).filter(Babble.nick == speaker).first() elif time.time() - markov.time > CACHE_LIFE: handler.workers.defer(0, False, update_markov, handler, speaker, cmdchar, ctrlchan)
359
https://:@github.com/ThibHlln/smartpy.git
6e02ac69689bff3802de8dcc5b15237996379aae
@@ -26,7 +26,7 @@ def nash_sutcliffe(evaluation, simulation): def groundwater_constraint(evaluation, simulation): - if (evaluation[0] - 0.1 <= simulation[0]) or (simulation[0] <= evaluation[0] + 0.1): + if (evaluation[0] - 0.1 <= simulation[0]) and (simulation[0] <= evaluation[0] + 0.1): return 1.0 else: return 0.0
SMARTobjective.py
ReplaceText(target='and' @(29,46)->(29,48))
def nash_sutcliffe(evaluation, simulation): def groundwater_constraint(evaluation, simulation): if (evaluation[0] - 0.1 <= simulation[0]) or (simulation[0] <= evaluation[0] + 0.1): return 1.0 else: return 0.0
def nash_sutcliffe(evaluation, simulation): def groundwater_constraint(evaluation, simulation): if (evaluation[0] - 0.1 <= simulation[0]) and (simulation[0] <= evaluation[0] + 0.1): return 1.0 else: return 0.0
360
https://:@github.com/satellogic/orbit-predictor.git
672c75a9b64b6735c08bd5270855588e3d514065
@@ -30,7 +30,7 @@ from orbit_predictor.predictors.base import CartesianPredictor, logger class TLEPredictor(CartesianPredictor): def __init__(self, sate_id, source): - super(TLEPredictor, self).__init__(source, sate_id) + super(TLEPredictor, self).__init__(sate_id, source) self._iterations = 0 def _propagate_eci(self, when_utc=None):
orbit_predictor/predictors/tle.py
ArgSwap(idxs=0<->1 @(33,8)->(33,42))
from orbit_predictor.predictors.base import CartesianPredictor, logger class TLEPredictor(CartesianPredictor): def __init__(self, sate_id, source): super(TLEPredictor, self).__init__(source, sate_id) self._iterations = 0 def _propagate_eci(self, when_utc=None):
from orbit_predictor.predictors.base import CartesianPredictor, logger class TLEPredictor(CartesianPredictor): def __init__(self, sate_id, source): super(TLEPredictor, self).__init__(sate_id, source) self._iterations = 0 def _propagate_eci(self, when_utc=None):
361
https://:@github.com/dipu-bd/lightnovel-crawler.git
773695654f273c9f7191817c4dd64e8322325809
@@ -39,7 +39,7 @@ class LightNovelOnline(Crawler): logger.debug('Visiting %s', self.novel_url) soup = self.get_soup(self.novel_url) - self.novel_id = urlparse(self.novel_url).path.split('/')[1] + self.novel_id = urlparse(self.novel_url).path.split('/')[-1] logger.info("Novel Id: %s", self.novel_id) self.novel_title = soup.select_one(
lncrawl/sources/lightnovelonline.py
ReplaceText(target='-1' @(42,65)->(42,66))
class LightNovelOnline(Crawler): logger.debug('Visiting %s', self.novel_url) soup = self.get_soup(self.novel_url) self.novel_id = urlparse(self.novel_url).path.split('/')[1] logger.info("Novel Id: %s", self.novel_id) self.novel_title = soup.select_one(
class LightNovelOnline(Crawler): logger.debug('Visiting %s', self.novel_url) soup = self.get_soup(self.novel_url) self.novel_id = urlparse(self.novel_url).path.split('/')[-1] logger.info("Novel Id: %s", self.novel_id) self.novel_title = soup.select_one(
362
https://:@github.com/raphaelm/python-sepaxml.git
024a11dd1e26d08bbeb028a2a13dabcb509011ec
@@ -54,7 +54,7 @@ def make_id(name): 12 char rand hex string. """ r = get_rand_string(12) - if len(name) <= 22: + if len(name) > 22: name = name[:22] return name + "-" + r
sepadd/utils.py
ReplaceText(target='>' @(57,17)->(57,19))
def make_id(name): 12 char rand hex string. """ r = get_rand_string(12) if len(name) <= 22: name = name[:22] return name + "-" + r
def make_id(name): 12 char rand hex string. """ r = get_rand_string(12) if len(name) > 22: name = name[:22] return name + "-" + r
363
https://:@github.com/raphaelm/python-sepaxml.git
98934ba5c863ffbc2bc770a34dd9ddea8edf2577
@@ -70,7 +70,7 @@ def int_to_decimal_str(integer): @return string The amount in currency with full stop decimal separator """ int_string = str(integer) - if len(int_string) < 2: + if len(int_string) <= 2: return "0." + int_string.zfill(2) else: return int_string[:-2] + "." + int_string[-2:]
sepaxml/utils.py
ReplaceText(target='<=' @(73,23)->(73,24))
def int_to_decimal_str(integer): @return string The amount in currency with full stop decimal separator """ int_string = str(integer) if len(int_string) < 2: return "0." + int_string.zfill(2) else: return int_string[:-2] + "." + int_string[-2:]
def int_to_decimal_str(integer): @return string The amount in currency with full stop decimal separator """ int_string = str(integer) if len(int_string) <= 2: return "0." + int_string.zfill(2) else: return int_string[:-2] + "." + int_string[-2:]
364
https://:@github.com/scikit-image/scikit-image.git
2585a323ac57004179b0ba643f953162650f39ee
@@ -51,7 +51,7 @@ def peak_local_max(image, min_distance=10, threshold='deprecated', threshold_rel = threshold # find top corner candidates above a threshold corner_threshold = max(np.max(image.ravel()) * threshold_rel, threshold_abs) - image_t = (image >= corner_threshold) * 1 + image_t = (image > corner_threshold) * 1 # get coordinates of peaks coordinates = np.transpose(image_t.nonzero())
skimage/feature/peak.py
ReplaceText(target='>' @(54,21)->(54,23))
def peak_local_max(image, min_distance=10, threshold='deprecated', threshold_rel = threshold # find top corner candidates above a threshold corner_threshold = max(np.max(image.ravel()) * threshold_rel, threshold_abs) image_t = (image >= corner_threshold) * 1 # get coordinates of peaks coordinates = np.transpose(image_t.nonzero())
def peak_local_max(image, min_distance=10, threshold='deprecated', threshold_rel = threshold # find top corner candidates above a threshold corner_threshold = max(np.max(image.ravel()) * threshold_rel, threshold_abs) image_t = (image > corner_threshold) * 1 # get coordinates of peaks coordinates = np.transpose(image_t.nonzero())
365
https://:@github.com/scikit-image/scikit-image.git
8084faf1f69c2c4ba79b6e85c7a2a06e1e7c77b8
@@ -133,7 +133,7 @@ def reconstruction(seed, mask, method='dilation', selem=None, offset=None): if offset == None: if not all([d % 2 == 1 for d in selem.shape]): ValueError("Footprint dimensions must all be odd") - offset = np.array([d / 2 for d in selem.shape]) + offset = np.array([d // 2 for d in selem.shape]) # Cross out the center of the selem selem[[slice(d, d + 1) for d in offset]] = False
skimage/morphology/greyreconstruct.py
ReplaceText(target='//' @(136,29)->(136,30))
def reconstruction(seed, mask, method='dilation', selem=None, offset=None): if offset == None: if not all([d % 2 == 1 for d in selem.shape]): ValueError("Footprint dimensions must all be odd") offset = np.array([d / 2 for d in selem.shape]) # Cross out the center of the selem selem[[slice(d, d + 1) for d in offset]] = False
def reconstruction(seed, mask, method='dilation', selem=None, offset=None): if offset == None: if not all([d % 2 == 1 for d in selem.shape]): ValueError("Footprint dimensions must all be odd") offset = np.array([d // 2 for d in selem.shape]) # Cross out the center of the selem selem[[slice(d, d + 1) for d in offset]] = False
366
https://:@github.com/scikit-image/scikit-image.git
d1629aec0f1a861106d54cb015b238e7fe542936
@@ -28,7 +28,7 @@ def approximate_polygon(coords, tolerance): ---------- .. [1] http://en.wikipedia.org/wiki/Ramer-Douglas-Peucker_algorithm """ - if tolerance == 0: + if tolerance <= 0: return coords chain = np.zeros(coords.shape[0], 'bool')
skimage/measure/_polygon.py
ReplaceText(target='<=' @(31,17)->(31,19))
def approximate_polygon(coords, tolerance): ---------- .. [1] http://en.wikipedia.org/wiki/Ramer-Douglas-Peucker_algorithm """ if tolerance == 0: return coords chain = np.zeros(coords.shape[0], 'bool')
def approximate_polygon(coords, tolerance): ---------- .. [1] http://en.wikipedia.org/wiki/Ramer-Douglas-Peucker_algorithm """ if tolerance <= 0: return coords chain = np.zeros(coords.shape[0], 'bool')
367
https://:@github.com/scikit-image/scikit-image.git
22f94d8707d3d9d2a36493403cbaeb61213dd68b
@@ -163,7 +163,7 @@ def rotate(image, angle, resize=False, order=1, mode='constant', cval=0.): tform = tform1 + tform2 + tform3 output_shape = None - if not resize: + if resize: # determine shape of output image corners = np.array([[1, 1], [1, rows], [cols, rows], [cols, 1]]) corners = tform(corners - 1)
skimage/transform/_warps.py
ReplaceText(target='' @(166,7)->(166,11))
def rotate(image, angle, resize=False, order=1, mode='constant', cval=0.): tform = tform1 + tform2 + tform3 output_shape = None if not resize: # determine shape of output image corners = np.array([[1, 1], [1, rows], [cols, rows], [cols, 1]]) corners = tform(corners - 1)
def rotate(image, angle, resize=False, order=1, mode='constant', cval=0.): tform = tform1 + tform2 + tform3 output_shape = None if resize: # determine shape of output image corners = np.array([[1, 1], [1, rows], [cols, rows], [cols, 1]]) corners = tform(corners - 1)
368
https://:@github.com/scikit-image/scikit-image.git
794a4d7daebfdcb217fbf0a73b9d42e256ce45cd
@@ -1085,7 +1085,7 @@ def _validate_lengths(narray, number_elements): normshp = _normalize_shape(narray, number_elements) for i in normshp: chk = [1 if x is None else x for x in i] - chk = [1 if x > 0 else -1 for x in chk] + chk = [1 if x >= 0 else -1 for x in chk] if (chk[0] < 0) or (chk[1] < 0): fmt = "%s cannot contain negative values." raise ValueError(fmt % (number_elements,))
skimage/util/arraypad.py
ReplaceText(target='>=' @(1088,22)->(1088,23))
def _validate_lengths(narray, number_elements): normshp = _normalize_shape(narray, number_elements) for i in normshp: chk = [1 if x is None else x for x in i] chk = [1 if x > 0 else -1 for x in chk] if (chk[0] < 0) or (chk[1] < 0): fmt = "%s cannot contain negative values." raise ValueError(fmt % (number_elements,))
def _validate_lengths(narray, number_elements): normshp = _normalize_shape(narray, number_elements) for i in normshp: chk = [1 if x is None else x for x in i] chk = [1 if x >= 0 else -1 for x in chk] if (chk[0] < 0) or (chk[1] < 0): fmt = "%s cannot contain negative values." raise ValueError(fmt % (number_elements,))
369
https://:@github.com/scikit-image/scikit-image.git
5f46fd01be76ac8c7252ab35ba58609e81ad0ca0
@@ -124,7 +124,7 @@ def _star_filter_kernel(m, n): def _suppress_lines(feature_mask, image, sigma, line_threshold): Axx, Axy, Ayy = _compute_auto_correlation(image, sigma) feature_mask[(Axx + Ayy) * (Axx + Ayy) - < line_threshold * (Axx * Ayy - Axy * Axy)] = 0 + > line_threshold * (Axx * Ayy - Axy * Axy)] = 0 return feature_mask
skimage/feature/censure.py
ReplaceText(target='>' @(127,17)->(127,18))
def _star_filter_kernel(m, n): def _suppress_lines(feature_mask, image, sigma, line_threshold): Axx, Axy, Ayy = _compute_auto_correlation(image, sigma) feature_mask[(Axx + Ayy) * (Axx + Ayy) < line_threshold * (Axx * Ayy - Axy * Axy)] = 0 return feature_mask
def _star_filter_kernel(m, n): def _suppress_lines(feature_mask, image, sigma, line_threshold): Axx, Axy, Ayy = _compute_auto_correlation(image, sigma) feature_mask[(Axx + Ayy) * (Axx + Ayy) > line_threshold * (Axx * Ayy - Axy * Axy)] = 0 return feature_mask
370
https://:@github.com/scikit-image/scikit-image.git
05aeb7c7fe89a70fa18294d69c9e12dd58fa5c08
@@ -159,7 +159,7 @@ def reconstruction(seed, mask, method='dilation', selem=None, offset=None): # Create a list of strides across the array to get the neighbors within # a flattened array value_stride = np.array(images.strides[1:]) / images.dtype.itemsize - image_stride = images.strides[0] / images.dtype.itemsize + image_stride = images.strides[0] // images.dtype.itemsize selem_mgrid = np.mgrid[[slice(-o, d - o) for d, o in zip(selem.shape, offset)]] selem_offsets = selem_mgrid[:, selem].transpose()
skimage/morphology/greyreconstruct.py
ReplaceText(target='//' @(162,37)->(162,38))
def reconstruction(seed, mask, method='dilation', selem=None, offset=None): # Create a list of strides across the array to get the neighbors within # a flattened array value_stride = np.array(images.strides[1:]) / images.dtype.itemsize image_stride = images.strides[0] / images.dtype.itemsize selem_mgrid = np.mgrid[[slice(-o, d - o) for d, o in zip(selem.shape, offset)]] selem_offsets = selem_mgrid[:, selem].transpose()
def reconstruction(seed, mask, method='dilation', selem=None, offset=None): # Create a list of strides across the array to get the neighbors within # a flattened array value_stride = np.array(images.strides[1:]) / images.dtype.itemsize image_stride = images.strides[0] // images.dtype.itemsize selem_mgrid = np.mgrid[[slice(-o, d - o) for d, o in zip(selem.shape, offset)]] selem_offsets = selem_mgrid[:, selem].transpose()
371
https://:@github.com/scikit-image/scikit-image.git
05fbc3fbfcc00157841c18b15b171d6477bfb5da
@@ -119,7 +119,7 @@ def slic(image, n_segments=100, compactness=10., max_iter=10, sigma=None, spacing = np.array(spacing, np.double) if not isinstance(sigma, coll.Iterable): sigma = np.array([sigma, sigma, sigma], np.double) - elif isinstance(spacing, (list, tuple)): + elif isinstance(sigma, (list, tuple)): sigma = np.array(sigma, np.double) if (sigma > 0).any(): sigma /= spacing.astype(np.double)
skimage/segmentation/slic_superpixels.py
ReplaceText(target='sigma' @(122,20)->(122,27))
def slic(image, n_segments=100, compactness=10., max_iter=10, sigma=None, spacing = np.array(spacing, np.double) if not isinstance(sigma, coll.Iterable): sigma = np.array([sigma, sigma, sigma], np.double) elif isinstance(spacing, (list, tuple)): sigma = np.array(sigma, np.double) if (sigma > 0).any(): sigma /= spacing.astype(np.double)
def slic(image, n_segments=100, compactness=10., max_iter=10, sigma=None, spacing = np.array(spacing, np.double) if not isinstance(sigma, coll.Iterable): sigma = np.array([sigma, sigma, sigma], np.double) elif isinstance(sigma, (list, tuple)): sigma = np.array(sigma, np.double) if (sigma > 0).any(): sigma /= spacing.astype(np.double)
372
https://:@github.com/scikit-image/scikit-image.git
1ca0eef825188ac5e9fc84b232b4783c166933ac
@@ -94,7 +94,7 @@ def view_as_blocks(arr_in, block_shape): arr_in = np.ascontiguousarray(arr_in) - new_shape = tuple(arr_shape / block_shape) + tuple(block_shape) + new_shape = tuple(arr_shape // block_shape) + tuple(block_shape) new_strides = tuple(arr_in.strides * block_shape) + arr_in.strides arr_out = as_strided(arr_in, shape=new_shape, strides=new_strides)
skimage/util/shape.py
ReplaceText(target='//' @(97,32)->(97,33))
def view_as_blocks(arr_in, block_shape): arr_in = np.ascontiguousarray(arr_in) new_shape = tuple(arr_shape / block_shape) + tuple(block_shape) new_strides = tuple(arr_in.strides * block_shape) + arr_in.strides arr_out = as_strided(arr_in, shape=new_shape, strides=new_strides)
def view_as_blocks(arr_in, block_shape): arr_in = np.ascontiguousarray(arr_in) new_shape = tuple(arr_shape // block_shape) + tuple(block_shape) new_strides = tuple(arr_in.strides * block_shape) + arr_in.strides arr_out = as_strided(arr_in, shape=new_shape, strides=new_strides)
373
https://:@github.com/scikit-image/scikit-image.git
a38b1c12579214cf77785e9c85f30202b2048c4f
@@ -136,7 +136,7 @@ def _clahe(image, ntiles_x, ntiles_y, clip_limit, nbins=128): image = pad(image, ((0, h_pad), (0, w_pad)), mode='reflect') h_inner, w_inner = image.shape - bin_size = 1 + NR_OF_GREY / nbins + bin_size = 1 + NR_OF_GREY // nbins lut = np.arange(NR_OF_GREY) lut //= bin_size img_blocks = view_as_blocks(image, (height, width))
skimage/exposure/_adapthist.py
ReplaceText(target='//' @(139,30)->(139,31))
def _clahe(image, ntiles_x, ntiles_y, clip_limit, nbins=128): image = pad(image, ((0, h_pad), (0, w_pad)), mode='reflect') h_inner, w_inner = image.shape bin_size = 1 + NR_OF_GREY / nbins lut = np.arange(NR_OF_GREY) lut //= bin_size img_blocks = view_as_blocks(image, (height, width))
def _clahe(image, ntiles_x, ntiles_y, clip_limit, nbins=128): image = pad(image, ((0, h_pad), (0, w_pad)), mode='reflect') h_inner, w_inner = image.shape bin_size = 1 + NR_OF_GREY // nbins lut = np.arange(NR_OF_GREY) lut //= bin_size img_blocks = view_as_blocks(image, (height, width))
374
https://:@github.com/scikit-image/scikit-image.git
9a192bf1cb899632253619385ad9814dbd61f63a
@@ -16,7 +16,7 @@ from skimage import graph, data, io, segmentation, color img = data.coffee() labels = segmentation.slic(img, compactness=30, n_segments=400) g = graph.rag_mean_color(img, labels) -labels2 = graph.merge_hierarchical(g, labels, 40) +labels2 = graph.merge_hierarchical(labels, g, 40) g2 = graph.rag_mean_color(img, labels2) out = color.label2rgb(labels2, img, kind='avg')
doc/examples/plot_rag_merge.py
ArgSwap(idxs=0<->1 @(19,10)->(19,34))
from skimage import graph, data, io, segmentation, color img = data.coffee() labels = segmentation.slic(img, compactness=30, n_segments=400) g = graph.rag_mean_color(img, labels) labels2 = graph.merge_hierarchical(g, labels, 40) g2 = graph.rag_mean_color(img, labels2) out = color.label2rgb(labels2, img, kind='avg')
from skimage import graph, data, io, segmentation, color img = data.coffee() labels = segmentation.slic(img, compactness=30, n_segments=400) g = graph.rag_mean_color(img, labels) labels2 = graph.merge_hierarchical(labels, g, 40) g2 = graph.rag_mean_color(img, labels2) out = color.label2rgb(labels2, img, kind='avg')
375
https://:@github.com/scikit-image/scikit-image.git
4bdde3d2aef2dd184e0b907983a15167326aec55
@@ -254,7 +254,7 @@ class ImageCollection(object): if ((self.conserve_memory and n != self._cached) or (self.data[idx] is None)): if self._frame_index: - fname, img_num = self._frame_index[idx] + fname, img_num = self._frame_index[n] self.data[idx] = self.load_func(fname, img_num=img_num, **self.load_func_kwargs) else:
skimage/io/collection.py
ReplaceText(target='n' @(257,55)->(257,58))
class ImageCollection(object): if ((self.conserve_memory and n != self._cached) or (self.data[idx] is None)): if self._frame_index: fname, img_num = self._frame_index[idx] self.data[idx] = self.load_func(fname, img_num=img_num, **self.load_func_kwargs) else:
class ImageCollection(object): if ((self.conserve_memory and n != self._cached) or (self.data[idx] is None)): if self._frame_index: fname, img_num = self._frame_index[n] self.data[idx] = self.load_func(fname, img_num=img_num, **self.load_func_kwargs) else:
376
https://:@github.com/scikit-image/scikit-image.git
84bcb583d76c1ec507b3d5794b6705d06383ced8
@@ -288,7 +288,7 @@ def hessian_matrix_eigvals(Hxx, Hxy, Hyy): """ - return _image_orthogonal_matrix22_eigvals(Hyy, Hxy, Hyy) + return _image_orthogonal_matrix22_eigvals(Hxx, Hxy, Hyy) def corner_kitchen_rosenfeld(image, mode='constant', cval=0):
skimage/feature/corner.py
ReplaceText(target='Hxx' @(291,46)->(291,49))
def hessian_matrix_eigvals(Hxx, Hxy, Hyy): """ return _image_orthogonal_matrix22_eigvals(Hyy, Hxy, Hyy) def corner_kitchen_rosenfeld(image, mode='constant', cval=0):
def hessian_matrix_eigvals(Hxx, Hxy, Hyy): """ return _image_orthogonal_matrix22_eigvals(Hxx, Hxy, Hyy) def corner_kitchen_rosenfeld(image, mode='constant', cval=0):
377
https://:@github.com/scikit-image/scikit-image.git
33e36542d5f457a50c5fa00371fb9fe18a620f15
@@ -84,7 +84,7 @@ def hough_line_peaks(hspace, angles, dists, min_distance=9, min_angle=10, -min_angle:min_angle + 1] for dist_idx, angle_idx in coords: - accum = hspace[dist_idx, angle_idx] + accum = hspace_max[dist_idx, angle_idx] if accum > threshold: # absolute coordinate grid for local neighbourhood suppression dist_nh = dist_idx + dist_ext
skimage/transform/hough_transform.py
ReplaceText(target='hspace_max' @(87,16)->(87,22))
def hough_line_peaks(hspace, angles, dists, min_distance=9, min_angle=10, -min_angle:min_angle + 1] for dist_idx, angle_idx in coords: accum = hspace[dist_idx, angle_idx] if accum > threshold: # absolute coordinate grid for local neighbourhood suppression dist_nh = dist_idx + dist_ext
def hough_line_peaks(hspace, angles, dists, min_distance=9, min_angle=10, -min_angle:min_angle + 1] for dist_idx, angle_idx in coords: accum = hspace_max[dist_idx, angle_idx] if accum > threshold: # absolute coordinate grid for local neighbourhood suppression dist_nh = dist_idx + dist_ext
378
https://:@github.com/scikit-image/scikit-image.git
bc52e4a411ab6d4aa10d38281e979158e6f21f19
@@ -105,7 +105,7 @@ def hough_line_peaks(hspace, angles, dists, min_distance=9, min_angle=10, angle_nh[angle_high] -= cols # suppress neighbourhood - hspace[dist_nh, angle_nh] = 0 + hspace_max[dist_nh, angle_nh] = 0 # add current line to peaks hspace_peaks.append(accum)
skimage/transform/hough_transform.py
ReplaceText(target='hspace_max' @(108,12)->(108,18))
def hough_line_peaks(hspace, angles, dists, min_distance=9, min_angle=10, angle_nh[angle_high] -= cols # suppress neighbourhood hspace[dist_nh, angle_nh] = 0 # add current line to peaks hspace_peaks.append(accum)
def hough_line_peaks(hspace, angles, dists, min_distance=9, min_angle=10, angle_nh[angle_high] -= cols # suppress neighbourhood hspace_max[dist_nh, angle_nh] = 0 # add current line to peaks hspace_peaks.append(accum)
379
https://:@github.com/scikit-image/scikit-image.git
2fb59b92435b9f67c091871cba701323b784ade7
@@ -48,7 +48,7 @@ def imread(fname, dtype=None, img_num=None, **kwargs): im = Image.open(f) return pil_to_ndarray(im, dtype=dtype, img_num=img_num) else: - im = Image.open(f) + im = Image.open(fname) return pil_to_ndarray(im, dtype=dtype, img_num=img_num)
skimage/io/_plugins/pil_plugin.py
ReplaceText(target='fname' @(51,24)->(51,25))
def imread(fname, dtype=None, img_num=None, **kwargs): im = Image.open(f) return pil_to_ndarray(im, dtype=dtype, img_num=img_num) else: im = Image.open(f) return pil_to_ndarray(im, dtype=dtype, img_num=img_num)
def imread(fname, dtype=None, img_num=None, **kwargs): im = Image.open(f) return pil_to_ndarray(im, dtype=dtype, img_num=img_num) else: im = Image.open(fname) return pil_to_ndarray(im, dtype=dtype, img_num=img_num)
380
https://:@github.com/scikit-image/scikit-image.git
4ee3b2c5ac89f946a9b4bbf26665411bb7241ff4
@@ -20,7 +20,7 @@ image = data.astronaut() rows, cols, dim = image.shape pyramid = tuple(pyramid_gaussian(image, downscale=2)) -composite_image = np.zeros((rows, cols + cols / 2, 3), dtype=np.double) +composite_image = np.zeros((rows, cols + cols // 2, 3), dtype=np.double) composite_image[:rows, :cols, :] = pyramid[0]
doc/examples/transform/plot_pyramid.py
ReplaceText(target='//' @(23,46)->(23,47))
image = data.astronaut() rows, cols, dim = image.shape pyramid = tuple(pyramid_gaussian(image, downscale=2)) composite_image = np.zeros((rows, cols + cols / 2, 3), dtype=np.double) composite_image[:rows, :cols, :] = pyramid[0]
image = data.astronaut() rows, cols, dim = image.shape pyramid = tuple(pyramid_gaussian(image, downscale=2)) composite_image = np.zeros((rows, cols + cols // 2, 3), dtype=np.double) composite_image[:rows, :cols, :] = pyramid[0]
381
https://:@github.com/scikit-image/scikit-image.git
472a420d86ff363cbb11df4e4b76ec090e0d015c
@@ -634,7 +634,7 @@ def skeletonize_3d(image, *, img=None): raise ValueError("skeletonize_3d can only handle 2D or 3D images; " "got image.ndim = %s instead." % image.ndim) image = np.ascontiguousarray(image) - image = img_as_ubyte(img, force_copy=False) + image = img_as_ubyte(image, force_copy=False) # make an in image 3D and pad it w/ zeros to simplify dealing w/ boundaries # NB: careful here to not clobber the original *and* minimize copying
skimage/morphology/_skeletonize.py
ReplaceText(target='image' @(637,25)->(637,28))
def skeletonize_3d(image, *, img=None): raise ValueError("skeletonize_3d can only handle 2D or 3D images; " "got image.ndim = %s instead." % image.ndim) image = np.ascontiguousarray(image) image = img_as_ubyte(img, force_copy=False) # make an in image 3D and pad it w/ zeros to simplify dealing w/ boundaries # NB: careful here to not clobber the original *and* minimize copying
def skeletonize_3d(image, *, img=None): raise ValueError("skeletonize_3d can only handle 2D or 3D images; " "got image.ndim = %s instead." % image.ndim) image = np.ascontiguousarray(image) image = img_as_ubyte(image, force_copy=False) # make an in image 3D and pad it w/ zeros to simplify dealing w/ boundaries # NB: careful here to not clobber the original *and* minimize copying
382
https://:@github.com/scikit-image/scikit-image.git
1539f238e52610f5e7607d5b447b5c491e3455eb
@@ -242,7 +242,7 @@ def test_arraymap_update(): in_values = np.unique(np.random.randint(0, 200, size=5)) out_values = np.random.random(len(in_values)) m = ArrayMap(in_values, out_values) - image = np.random.randint(1, len(in_values), size=(512, 512)) + image = np.random.randint(1, len(m), size=(512, 512)) assert np.all(m[image] < 1) # missing values map to 0. m[1:] += 1 assert np.all(m[image] >= 1)
skimage/segmentation/tests/test_join.py
ReplaceText(target='m' @(245,37)->(245,46))
def test_arraymap_update(): in_values = np.unique(np.random.randint(0, 200, size=5)) out_values = np.random.random(len(in_values)) m = ArrayMap(in_values, out_values) image = np.random.randint(1, len(in_values), size=(512, 512)) assert np.all(m[image] < 1) # missing values map to 0. m[1:] += 1 assert np.all(m[image] >= 1)
def test_arraymap_update(): in_values = np.unique(np.random.randint(0, 200, size=5)) out_values = np.random.random(len(in_values)) m = ArrayMap(in_values, out_values) image = np.random.randint(1, len(m), size=(512, 512)) assert np.all(m[image] < 1) # missing values map to 0. m[1:] += 1 assert np.all(m[image] >= 1)
383
https://:@github.com/globusonline/agamemnon.git
6460e336b2a3fd359364f85e39d6e3222077621e
@@ -233,7 +233,7 @@ class DataStore(object): source_node_key = value elif column.startswith('source__'): source_attributes[column[8:]] = value - source = prim.Node(self, source_node_type, source_node_key, values) + source = prim.Node(self, source_node_type, source_node_key, source_attributes) rel_key = RELATIONSHIP_KEY_PATTERN % (rel_type, rel_key) return self.get_outgoing_relationship(rel_type, source, (rel_key, values))
agamemnon/factory.py
ReplaceText(target='source_attributes' @(236,68)->(236,74))
class DataStore(object): source_node_key = value elif column.startswith('source__'): source_attributes[column[8:]] = value source = prim.Node(self, source_node_type, source_node_key, values) rel_key = RELATIONSHIP_KEY_PATTERN % (rel_type, rel_key) return self.get_outgoing_relationship(rel_type, source, (rel_key, values))
class DataStore(object): source_node_key = value elif column.startswith('source__'): source_attributes[column[8:]] = value source = prim.Node(self, source_node_type, source_node_key, source_attributes) rel_key = RELATIONSHIP_KEY_PATTERN % (rel_type, rel_key) return self.get_outgoing_relationship(rel_type, source, (rel_key, values))
384
https://:@github.com/chiptopher/guet.git
f95c54917b51e65f47789534ab88ecbede1838eb
@@ -11,6 +11,6 @@ def _recursive_directory_find(path: Path, directory_name: str) -> str: raise FileNotFoundError() joined_with_driectory = path.joinpath(directory_name) if joined_with_driectory.is_dir(): - return str(joined_with_driectory) + return str(path) else: return _recursive_directory_find(path.parent, directory_name)
guet/util/_recursive_directory_find.py
ReplaceText(target='path' @(14,19)->(14,40))
def _recursive_directory_find(path: Path, directory_name: str) -> str: raise FileNotFoundError() joined_with_driectory = path.joinpath(directory_name) if joined_with_driectory.is_dir(): return str(joined_with_driectory) else: return _recursive_directory_find(path.parent, directory_name)
def _recursive_directory_find(path: Path, directory_name: str) -> str: raise FileNotFoundError() joined_with_driectory = path.joinpath(directory_name) if joined_with_driectory.is_dir(): return str(path) else: return _recursive_directory_find(path.parent, directory_name)
385
https://:@github.com/justinsalamon/scaper.git
520ae608ebcbcc5e5438ca5c7967dc2479454038
@@ -193,7 +193,7 @@ def generate_from_jams(jams_infile, audio_outfile, fg_path=None, bg_path=None, tfm.trim(sliceop['slice_start'], sliceop['slice_end']) tfm.build(audio_file, tmpfiles[-1].name) # Copy result back to original file - shutil.copyfile(tmpfiles[-1].name, audio_outfile) + shutil.copyfile(tmpfiles[-1].name, audio_file) # Optionally save new jams file if jams_outfile is not None:
scaper/core.py
ReplaceText(target='audio_file' @(196,55)->(196,68))
def generate_from_jams(jams_infile, audio_outfile, fg_path=None, bg_path=None, tfm.trim(sliceop['slice_start'], sliceop['slice_end']) tfm.build(audio_file, tmpfiles[-1].name) # Copy result back to original file shutil.copyfile(tmpfiles[-1].name, audio_outfile) # Optionally save new jams file if jams_outfile is not None:
def generate_from_jams(jams_infile, audio_outfile, fg_path=None, bg_path=None, tfm.trim(sliceop['slice_start'], sliceop['slice_end']) tfm.build(audio_file, tmpfiles[-1].name) # Copy result back to original file shutil.copyfile(tmpfiles[-1].name, audio_file) # Optionally save new jams file if jams_outfile is not None:
386
https://:@github.com/markokr/rarfile.git
7fd6b2ca3efb81f7c4dffa6b6cef347b7d6ba043
@@ -833,7 +833,7 @@ class RarFile: if dirs: dirs.sort(reverse=True) for dst, inf in dirs: - self._set_attrs(dst, inf) + self._set_attrs(inf, dst) def testrar(self, pwd=None): """Read all files and test CRC.
rarfile.py
ArgSwap(idxs=0<->1 @(836,16)->(836,31))
class RarFile: if dirs: dirs.sort(reverse=True) for dst, inf in dirs: self._set_attrs(dst, inf) def testrar(self, pwd=None): """Read all files and test CRC.
class RarFile: if dirs: dirs.sort(reverse=True) for dst, inf in dirs: self._set_attrs(inf, dst) def testrar(self, pwd=None): """Read all files and test CRC.
387
https://:@github.com/rougier/freetype-py.git
b21f15fb02eb44a656c250357665d1d7dc50bef6
@@ -44,7 +44,7 @@ if __name__ == '__main__': y = height-baseline-top kerning = face.get_kerning(previous, c) x += (kerning.x >> 6) - Z[y:y+h,x:x+w] |= numpy.array(bitmap.buffer).reshape(h,w) + Z[y:y+h,x:x+w] += numpy.array(bitmap.buffer).reshape(h,w) x += (slot.advance.x >> 6) previous = c
examples/hello-world.py
ReplaceText(target='+=' @(47,23)->(47,25))
if __name__ == '__main__': y = height-baseline-top kerning = face.get_kerning(previous, c) x += (kerning.x >> 6) Z[y:y+h,x:x+w] |= numpy.array(bitmap.buffer).reshape(h,w) x += (slot.advance.x >> 6) previous = c
if __name__ == '__main__': y = height-baseline-top kerning = face.get_kerning(previous, c) x += (kerning.x >> 6) Z[y:y+h,x:x+w] += numpy.array(bitmap.buffer).reshape(h,w) x += (slot.advance.x >> 6) previous = c
388
https://:@github.com/piotrmaslanka/satella.git
24018c366401278a79da72097f1c594c188f5220
@@ -15,7 +15,7 @@ def _merge(v1, v2): if isinstance(v1, list) and isinstance(v2, list): v1.extend(v2) - return v2 + return v1 raise TypeError
satella/coding/algos.py
ReplaceText(target='v1' @(18,15)->(18,17))
def _merge(v1, v2): if isinstance(v1, list) and isinstance(v2, list): v1.extend(v2) return v2 raise TypeError
def _merge(v1, v2): if isinstance(v1, list) and isinstance(v2, list): v1.extend(v2) return v1 raise TypeError
389
https://:@github.com/piotrmaslanka/satella.git
4828537442e39bd6592413a5b4a2421a079edc91
@@ -194,7 +194,7 @@ class Heap(object): :return: Iterator """ while self: - if self.heap[0] >= less: + if self.heap[0] < less: return yield self.pop()
satella/coding/structures.py
ReplaceText(target='<' @(197,28)->(197,30))
class Heap(object): :return: Iterator """ while self: if self.heap[0] >= less: return yield self.pop()
class Heap(object): :return: Iterator """ while self: if self.heap[0] < less: return yield self.pop()
390
https://:@github.com/piotrmaslanka/satella.git
fab19fa60841455e2ec0ec4493c618b7f5225f7d
@@ -35,7 +35,7 @@ class MeasurableMixin: elapsed = value_getter() - future.old_value self.handle(logging_level, elapsed, **labels) - future.add_done_callback(future) + future.add_done_callback(on_future_done) def measure(self, include_exceptions: bool = True, logging_level: MetricLevel = MetricLevel.RUNTIME,
satella/instrumentation/metrics/metric_types/measurable_mixin.py
ReplaceText(target='on_future_done' @(38,33)->(38,39))
class MeasurableMixin: elapsed = value_getter() - future.old_value self.handle(logging_level, elapsed, **labels) future.add_done_callback(future) def measure(self, include_exceptions: bool = True, logging_level: MetricLevel = MetricLevel.RUNTIME,
class MeasurableMixin: elapsed = value_getter() - future.old_value self.handle(logging_level, elapsed, **labels) future.add_done_callback(on_future_done) def measure(self, include_exceptions: bool = True, logging_level: MetricLevel = MetricLevel.RUNTIME,
391
https://:@github.com/piotrmaslanka/satella.git
a9b866bd76586a440918130d52ca933529ac521a
@@ -117,7 +117,7 @@ class Proxy(tp.Generic[T]): return self.__obj or other def __and__(self, other): - return self.__obj or other + return self.__obj and other def __le__(self, other): return self.__obj <= other
satella/coding/structures/proxy.py
ReplaceText(target='and' @(120,26)->(120,28))
class Proxy(tp.Generic[T]): return self.__obj or other def __and__(self, other): return self.__obj or other def __le__(self, other): return self.__obj <= other
class Proxy(tp.Generic[T]): return self.__obj or other def __and__(self, other): return self.__obj and other def __le__(self, other): return self.__obj <= other
392
https://:@github.com/dmlc/keras.git
2662d81a9c925501831f0acb805c9e8adcde0a32
@@ -160,7 +160,7 @@ class Adam(Optimizer): m_b_t = m_t / (1 - beta_1_t) v_b_t = v_t / (1 - beta_2_t) - p_t = p - self.lr * m_b_t / (T.sqrt(v_t) + self.epsilon) + p_t = p - self.lr * m_b_t / (T.sqrt(v_b_t) + self.epsilon) updates.append((m, m_t)) updates.append((v, v_t))
keras/optimizers.py
ReplaceText(target='v_b_t' @(163,48)->(163,51))
class Adam(Optimizer): m_b_t = m_t / (1 - beta_1_t) v_b_t = v_t / (1 - beta_2_t) p_t = p - self.lr * m_b_t / (T.sqrt(v_t) + self.epsilon) updates.append((m, m_t)) updates.append((v, v_t))
class Adam(Optimizer): m_b_t = m_t / (1 - beta_1_t) v_b_t = v_t / (1 - beta_2_t) p_t = p - self.lr * m_b_t / (T.sqrt(v_b_t) + self.epsilon) updates.append((m, m_t)) updates.append((v, v_t))
393
https://:@github.com/dmlc/keras.git
cc10c4d907d959eb9009ad502c727542a5259613
@@ -69,7 +69,7 @@ def skipgrams(sequence, vocabulary_size, if not wi: continue if sampling_table is not None: - if sampling_table[i] < random.random(): + if sampling_table[wi] < random.random(): continue window_start = max(0, i-window_size)
keras/preprocessing/sequence.py
ReplaceText(target='wi' @(72,30)->(72,31))
def skipgrams(sequence, vocabulary_size, if not wi: continue if sampling_table is not None: if sampling_table[i] < random.random(): continue window_start = max(0, i-window_size)
def skipgrams(sequence, vocabulary_size, if not wi: continue if sampling_table is not None: if sampling_table[wi] < random.random(): continue window_start = max(0, i-window_size)
394
https://:@github.com/dmlc/keras.git
e3695591704a21c6d0d6236c11c1bad7de4e314c
@@ -58,7 +58,7 @@ class SimpleRNN(Layer): mask = T.addbroadcast(mask[:, :, np.newaxis], 2) mask_tm1 = alloc_zeros_matrix(*mask.shape) - mask_tm1 = T.addbroadcast(T.set_subtensor(mask[1:, :, :], mask[:-1, :, :]), 2) + mask_tm1 = T.addbroadcast(T.set_subtensor(mask_tm1[1:, :, :], mask[:-1, :, :]), 2) # scan = theano symbolic loop. # See: http://deeplearning.net/software/theano/library/scan.html
keras/layers/recurrent.py
ReplaceText(target='mask_tm1' @(61,50)->(61,54))
class SimpleRNN(Layer): mask = T.addbroadcast(mask[:, :, np.newaxis], 2) mask_tm1 = alloc_zeros_matrix(*mask.shape) mask_tm1 = T.addbroadcast(T.set_subtensor(mask[1:, :, :], mask[:-1, :, :]), 2) # scan = theano symbolic loop. # See: http://deeplearning.net/software/theano/library/scan.html
class SimpleRNN(Layer): mask = T.addbroadcast(mask[:, :, np.newaxis], 2) mask_tm1 = alloc_zeros_matrix(*mask.shape) mask_tm1 = T.addbroadcast(T.set_subtensor(mask_tm1[1:, :, :], mask[:-1, :, :]), 2) # scan = theano symbolic loop. # See: http://deeplearning.net/software/theano/library/scan.html
395
https://:@github.com/dmlc/keras.git
c315b0d7a95b6677452300bdefd526b444951819
@@ -218,7 +218,7 @@ class GaussianNoise(MaskedLayer): def get_output(self, train=False): X = self.get_input(train) - if train or self.sigma == 0: + if not train or self.sigma == 0: return X else: return X + srng.normal(size=X.shape, avg=0.0, std=self.sigma,
keras/layers/core.py
ReplaceText(target='not ' @(221,11)->(221,11))
class GaussianNoise(MaskedLayer): def get_output(self, train=False): X = self.get_input(train) if train or self.sigma == 0: return X else: return X + srng.normal(size=X.shape, avg=0.0, std=self.sigma,
class GaussianNoise(MaskedLayer): def get_output(self, train=False): X = self.get_input(train) if not train or self.sigma == 0: return X else: return X + srng.normal(size=X.shape, avg=0.0, std=self.sigma,
396
https://:@github.com/dmlc/keras.git
46a2fb6fd8e52b02df78f1416cc9fbd4b3156604
@@ -42,7 +42,7 @@ class Optimizer(object): grads = [clip_norm(g, self.clipnorm, norm) for g in grads] if hasattr(self, 'clipvalue') and self.clipvalue > 0: - grads = [T.clip(g, self.clipvalue, -self.clipvalue) for g in grads] + grads = [T.clip(g, -self.clipvalue, self.clipvalue) for g in grads] return grads
keras/optimizers.py
ArgSwap(idxs=1<->2 @(45,21)->(45,27))
class Optimizer(object): grads = [clip_norm(g, self.clipnorm, norm) for g in grads] if hasattr(self, 'clipvalue') and self.clipvalue > 0: grads = [T.clip(g, self.clipvalue, -self.clipvalue) for g in grads] return grads
class Optimizer(object): grads = [clip_norm(g, self.clipnorm, norm) for g in grads] if hasattr(self, 'clipvalue') and self.clipvalue > 0: grads = [T.clip(g, -self.clipvalue, self.clipvalue) for g in grads] return grads
397
https://:@github.com/dmlc/keras.git
c2534964b76015eb3d76261b025c7556b354764c
@@ -158,7 +158,7 @@ class SimpleRNN(Recurrent): assert len(states) == 1 prev_output = states[0] h = K.dot(x, self.W) + self.b - output = self.activation(h * K.dot(prev_output, self.U)) + output = self.activation(h + K.dot(prev_output, self.U)) return output, [output] def get_config(self):
keras/layers/recurrent.py
ReplaceText(target='+' @(161,35)->(161,36))
class SimpleRNN(Recurrent): assert len(states) == 1 prev_output = states[0] h = K.dot(x, self.W) + self.b output = self.activation(h * K.dot(prev_output, self.U)) return output, [output] def get_config(self):
class SimpleRNN(Recurrent): assert len(states) == 1 prev_output = states[0] h = K.dot(x, self.W) + self.b output = self.activation(h + K.dot(prev_output, self.U)) return output, [output] def get_config(self):
398
https://:@github.com/dmlc/keras.git
3d51a26749937cb1a1aec40c20bc505e82809dce
@@ -449,7 +449,7 @@ class Graph(Layer): self.namespace.add(sh_name) self.nodes[sh_name] = sh self.node_config.append({'name': sh_name, - 'inputs': [s], + 'inputs': [name], 'create_output': create_output}) if create_output: self.add_output(sh_name, input=sh_name)
keras/layers/containers.py
ReplaceText(target='name' @(452,52)->(452,53))
class Graph(Layer): self.namespace.add(sh_name) self.nodes[sh_name] = sh self.node_config.append({'name': sh_name, 'inputs': [s], 'create_output': create_output}) if create_output: self.add_output(sh_name, input=sh_name)
class Graph(Layer): self.namespace.add(sh_name) self.nodes[sh_name] = sh self.node_config.append({'name': sh_name, 'inputs': [name], 'create_output': create_output}) if create_output: self.add_output(sh_name, input=sh_name)
399
https://:@github.com/dmlc/keras.git
42b3d37a54545882699283b5764cf3c997f8d9cd
@@ -43,7 +43,7 @@ def test_skipgrams(): couples, labels = skipgrams(np.arange(5), vocabulary_size=5, window_size=1, categorical=True) for couple in couples: - assert couple[0] - couple[1] < 3 + assert couple[0] - couple[1] <= 3 for l in labels: assert len(l) == 2
tests/keras/preprocessing/test_sequence.py
ReplaceText(target='<=' @(46,37)->(46,38))
def test_skipgrams(): couples, labels = skipgrams(np.arange(5), vocabulary_size=5, window_size=1, categorical=True) for couple in couples: assert couple[0] - couple[1] < 3 for l in labels: assert len(l) == 2
def test_skipgrams(): couples, labels = skipgrams(np.arange(5), vocabulary_size=5, window_size=1, categorical=True) for couple in couples: assert couple[0] - couple[1] <= 3 for l in labels: assert len(l) == 2