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Cannot get the config names for the dataset.
Error code: ConfigNamesError
Exception: ImportError
Message: To be able to use SEACrowd/bioner_id, you need to install the following dependency: seacrowd.
Please install it using 'pip install seacrowd' for instance.
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response
config_names = get_dataset_config_names(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names
dataset_module = dataset_module_factory(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory
raise e1 from None
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory
return HubDatasetModuleFactoryWithScript(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module
local_imports = _download_additional_modules(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules
raise ImportError(
ImportError: To be able to use SEACrowd/bioner_id, you need to install the following dependency: seacrowd.
Please install it using 'pip install seacrowd' for instance.Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
YAML Metadata
Warning:
The task_categories "named-entity-recognition" is not in the official list: text-classification, token-classification, table-question-answering, question-answering, zero-shot-classification, translation, summarization, feature-extraction, text-generation, text2text-generation, fill-mask, sentence-similarity, text-to-speech, text-to-audio, automatic-speech-recognition, audio-to-audio, audio-classification, voice-activity-detection, depth-estimation, image-classification, object-detection, image-segmentation, text-to-image, image-to-text, image-to-image, image-to-video, unconditional-image-generation, video-classification, reinforcement-learning, robotics, tabular-classification, tabular-regression, tabular-to-text, table-to-text, multiple-choice, text-retrieval, time-series-forecasting, text-to-video, image-text-to-text, visual-question-answering, document-question-answering, zero-shot-image-classification, graph-ml, mask-generation, zero-shot-object-detection, text-to-3d, image-to-3d, image-feature-extraction, other
This dataset taken from online health consultation platform Alodokter.com which has been annotated by two medical doctors. Data were annotated using IOB in CoNLL format.
Dataset contains 2600 medical answers by doctors from 2017-2020. Two medical experts were assigned to annotate the data into two entity types: DISORDERS and ANATOMY. The topics of answers are: diarrhea, HIV-AIDS, nephrolithiasis and TBC, which marked as high-risk dataset from WHO.
Languages
ind
Supported Tasks
Named Entity Recognition
Dataset Usage
Using datasets library
from datasets import load_dataset
dset = datasets.load_dataset("SEACrowd/bioner_id", trust_remote_code=True)
Using seacrowd library
# Load the dataset using the default config
dset = sc.load_dataset("bioner_id", schema="seacrowd")
# Check all available subsets (config names) of the dataset
print(sc.available_config_names("bioner_id"))
# Load the dataset using a specific config
dset = sc.load_dataset_by_config_name(config_name="<config_name>")
More details on how to load the seacrowd library can be found here.
Dataset Homepage
https://huggingface.co/datasets/abid/indonesia-bioner-dataset
Dataset Version
Source: 1.0.0. SEACrowd: 2024.06.20.
Dataset License
BSD 3-clause Clear license (bsd-3-clause-clear)
Citation
If you are using the Bioner Id dataloader in your work, please cite the following:
@article{abdillah2023pengenalan,
title={Pengenalan Entitas Biomedis dalam Teks Konsultasi Kesehatan Online Berbahasa Indonesia Berbasis Arsitektur Transformers},
author={Abdillah, Abid Famasya and Purwitasari, Diana and Juanita, Safitri and Purnomo, Mauridhi Hery},
year={2023},
month=feb,
journal={Jurnal Teknologi Informasi dan Ilmu Komputer},
volume={10},
number={1},
pages={131--140}
}
@article{lovenia2024seacrowd,
title={SEACrowd: A Multilingual Multimodal Data Hub and Benchmark Suite for Southeast Asian Languages},
author={Holy Lovenia and Rahmad Mahendra and Salsabil Maulana Akbar and Lester James V. Miranda and Jennifer Santoso and Elyanah Aco and Akhdan Fadhilah and Jonibek Mansurov and Joseph Marvin Imperial and Onno P. Kampman and Joel Ruben Antony Moniz and Muhammad Ravi Shulthan Habibi and Frederikus Hudi and Railey Montalan and Ryan Ignatius and Joanito Agili Lopo and William Nixon and Börje F. Karlsson and James Jaya and Ryandito Diandaru and Yuze Gao and Patrick Amadeus and Bin Wang and Jan Christian Blaise Cruz and Chenxi Whitehouse and Ivan Halim Parmonangan and Maria Khelli and Wenyu Zhang and Lucky Susanto and Reynard Adha Ryanda and Sonny Lazuardi Hermawan and Dan John Velasco and Muhammad Dehan Al Kautsar and Willy Fitra Hendria and Yasmin Moslem and Noah Flynn and Muhammad Farid Adilazuarda and Haochen Li and Johanes Lee and R. Damanhuri and Shuo Sun and Muhammad Reza Qorib and Amirbek Djanibekov and Wei Qi Leong and Quyet V. Do and Niklas Muennighoff and Tanrada Pansuwan and Ilham Firdausi Putra and Yan Xu and Ngee Chia Tai and Ayu Purwarianti and Sebastian Ruder and William Tjhi and Peerat Limkonchotiwat and Alham Fikri Aji and Sedrick Keh and Genta Indra Winata and Ruochen Zhang and Fajri Koto and Zheng-Xin Yong and Samuel Cahyawijaya},
year={2024},
eprint={2406.10118},
journal={arXiv preprint arXiv: 2406.10118}
}
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