<jupyter_start><jupyter_text>Entry PointAll the command line tools is under the `allcools` command. The following chart illustrates their relationships.```{figure} ./ALLCools.png---height: 600pxname: allcools-fig---ALLCools command line tools.``` Usage<jupyter_code>import subprocess
from IPython.display import display, Markdown


def execute_command_and_return_markdown(command):
    output = subprocess.run(command,
                            shell=True,
                            check=True,
                            stdout=subprocess.PIPE,
                            encoding='utf8').stdout
    markdown = f"""
```shell
$ {command}
{output}
```
"""
    display(Markdown(markdown))
    return
execute_command_and_return_markdown('allcools -h')<jupyter_output><empty_output>
{'fraction_non_alphanumeric': 0.10586734693877552, 'fraction_numerical': 0.00510204081632653, 'mean_word_length': 2.925, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'chain_length': '1', 'dir': 'jupyter-structured-clean-dedup', 'id': '645039', 'license': 'MIT', 'n_tokens_mistral': 233, 'n_tokens_neox': 217, 'n_words': 47, 'path': 'docs/allcools/command_line/allcools.ipynb', 'repo_name': 'mukamel-lab/ALLCools', 'size': '784'}