<jupyter_start><jupyter_text>After registration, downsampling, and getting a csv with the coordinates and brightess of the brightest points  Mapping the points to its appropriate region<jupyter_code># get_regions(points_path, anno_path, output_path)
# rp = cl.get_regions('../Fear199_points.csv', '../img/Fear199_anno.nii', 'Fear199_regions.csv')<jupyter_output><empty_output><jupyter_text>Generating the networkx graph object of the brain<jupyter_code># create_graph(points_path, radius=20, output_filename=None)
g = cl.create_graph('../Fear199_regions.csv', 20, 'test.graphml')<jupyter_output>finished creating graph, now about to save to graphml.<jupyter_text>Generating the brain graph colored by region<jupyter_code>figure = generate_region_graph('Fear199', 'Fear199_regions.csv', 'Fear199_region.html')<jupyter_output><empty_output>
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