<jupyter_start><jupyter_text>Jupyter Training HTML export R. <NAME>https://github.com/burkesquires I will use this notebook to export each notebook to a HTML for review and ultimately to include as previews for people to look at if they do not want to install the Anaconda distribution.PDFs are giving me a problem as I do not have latex installed; defaulting to html<jupyter_code>ls ../
ls ./
# Introduction

!jupyter nbconvert --to html ../0-Intro/0_Jupyter_training.ipynb --output-dir=./
# Anaconda folder
!jupyter nbconvert --to html ../1-Anaconda/1-1-Anaconda-Overview.ipynb --output-dir=./
!jupyter nbconvert --to html ../1-Anaconda/1-2-Anaconda-Installation.ipynb --output-dir=./
# Jupyter
!jupyter nbconvert --to html ../2-Jupyter/2-1-Jupyter-ecosystem.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-2-Jupyter-architecture.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-3-Jupyter-notebook-basics.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-4-Jupyter-markdown.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-5-Jupyter-code-python.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-6-Jupyter-code-r.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-7-Jupyter-command-line.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-8-Jupyter-magics.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-9-jupyter-sharing/2-9-1-Jupyter-sharing.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-9-jupyter-sharing/2-9-2-Jupyter-sharing-github.ipynb --output-dir=./
!jupyter nbconvert --to html ../2-Jupyter/2-9-jupyter-sharing/2-9-3-Intro_to_binder.ipynb --output-dir=./
# Bioconda workflow example
!jupyter nbconvert --to html ../3-Build-Bioinfo-Workflow/3-1-install-bioconda.ipynb --output-dir=./
!jupyter nbconvert --to html ../3-Build-Bioinfo-Workflow/3-2-variant-calling-workflow.ipynb --output-dir=./
# Last things
!jupyter nbconvert --to html ../4-Last-things/4-1-Demos.ipynb  --output-dir=./
!jupyter nbconvert --to html ../4-Last-things/4-2-Additional-resources.ipynb  --output-dir=./<jupyter_output>[NbConvertApp] Converting notebook ../4-Last-things/4-1-Demos.ipynb to html
[NbConvertApp] Writing 252377 bytes to ./4-1-Demos.html
[NbConvertApp] Converting notebook ../4-Last-things/4-2-Additional-resources.ipynb to html
[NbConvertApp] Writing 251186 bytes to ./4-2-Additional-resources.html
{'fraction_non_alphanumeric': 0.16830065359477125, 'fraction_numerical': 0.03431372549019608, 'mean_word_length': 3.388888888888889, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 1, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'chain_length': '1', 'dir': 'jupyter-structured-clean-dedup', 'id': '186890', 'license': 'MIT', 'n_tokens_mistral': 1065, 'n_tokens_neox': 1012, 'n_words': 197, 'path': 'notebooks/9-html-export/99-Export.ipynb', 'repo_name': 'burkesquires/jupyter_training_2020', 'size': '2455'}