<jupyter_start><jupyter_text>Part 1: Initialize<jupyter_code>host = 'g_tract_21mer'
plot_agent = RMSFResPlot(host, big_traj_folder, backbone_data_folder)<jupyter_output>/home/yizaochen/codes/dna_rna/backbone_data/g_tract_21mer exists
/home/yizaochen/codes/dna_rna/backbone_data/g_tract_21mer/STRAND1 exists
/home/yizaochen/codes/dna_rna/backbone_data/g_tract_21mer/STRAND1/ndx exists
/home/yizaochen/codes/dna_rna/backbone_data/g_tract_21mer exists
/home/yizaochen/codes/dna_rna/backbone_data/g_tract_21mer/STRAND2 exists
/home/yizaochen/codes/dna_rna/backbone_data/g_tract_21mer/STRAND2/ndx exists<jupyter_text>Part 2: Test Plot<jupyter_code>figsize = (6, 4)
inverse = True
ylim = (1.2, 3.2)
assisthlines = np.arange(1.25, 3.01, 0.25)

plot_agent.plot_main(figsize, inverse, ylim, assisthlines)
svg_out = path.join(drawzone_folder, f'{host}.svg')
plt.tight_layout()
plt.savefig(svg_out, dpi=150)
plt.show()<jupyter_output><empty_output>
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