<jupyter_start><jupyter_text>Part 5 of Axis Scaling: Overlapping Zoomed RegionsThis page is primarily based on the following page at the Circos documentation site:- [5. Overlapping Zoomed Regions](????????????)That page is found as part number 4 of the ??? part ['Axis Scaling' section](http://circos.ca/documentation/tutorials/quick_start/) of [the larger set of Circos tutorials](http://circos.ca/documentation/tutorials/).Go back to Part 4 by clicking [here &8592;](AxisScaling_Part4.ipynb).----7 --- Axis Scaling==================5. Overlapping Zoomed Regions-----------------------------::: {menu4}[[Lesson](/documentation/tutorials/scaling/overlaping_zooms/lesson){.clean}]{.active}[Images](/documentation/tutorials/scaling/overlaping_zooms/images){.normal}[Configuration](/documentation/tutorials/scaling/overlaping_zooms/configuration){.normal}:::When overlapping zoom regions are defined, the zoom level at an ideogramposition is taken to be the highest (in absolute terms) zoom of anyoverlapping regions.For example, if you define the following regions ```ini100-200Mb - 2x150-180Mb - 3x160-170Mb - 5x``` then the net effect will be as if you defined ```ini100-150Mb - 2x150-160Mb - 3x160-170Mb - 5x170-180Mb - 3x180-200Mb - 2x``` The zoom precedence is defined by the absolute zoom level, which istaken to be max(scale,1/scale) For example, a scale of 0.1 (absolutezoom = 1/0.1 = 10x) overrides any zoom setting with an absolute zoomlevel smaller than 10x.---- Generating the plot produced by this example codeThe following two cells will generate the plot. The first cell adjusts the current working directory.<jupyter_code>%cd ../circos-tutorials-0.67/tutorials/7/5/
%%bash
../../../../circos-0.69-6/bin/circos -conf circos.conf<jupyter_output>debuggroup summary 0.37s welcome to circos v0.69-6 31 July 2017 on Perl 5.022000
debuggroup summary 0.38s current working directory /home/jovyan/circos-tutorials-0.67/tutorials/7/5
debuggroup summary 0.38s command ../../../../circos-0.69-6/bin/circos -conf circos.conf
debuggroup summary 0.38s loading configuration from file circos.conf
debuggroup summary 0.38s found conf file circos.conf
debuggroup summary 0.53s debug will appear for these features: output,summary
debuggroup summary 0.54s bitmap output image ./circos.png
debuggroup summary 0.54s SVG output image ./circos.svg
debuggroup summary 0.54s parsing karyotype and organizing ideograms
debuggroup summary 0.64s karyotype has 24 chromosomes of total size 3,095,677,436
debuggroup summary 0.64s applying global and local scaling
debuggroup summary 0.65s allocating image, colors and brushes
debuggroup summary 2.78s drawing 2 ideograms of total size 492,449,996
debuggroup summary 2.78s drawing highlights and ideograms
debuggroup summary[...]<jupyter_text>View the plot in this page using the following cell.<jupyter_code>from IPython.display import Image
Image("circos.png")<jupyter_output><empty_output>
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