<commit_before>package org.opencds.cqf.ruler.cr.r4.provider;

import java.util.Map;

import ca.uhn.fhir.rest.client.api.IGenericClient;
import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.Endpoint;
import org.hl7.fhir.r4.model.Extension;
import org.hl7.fhir.r4.model.IdType;
import org.hl7.fhir.r4.model.Measure;
import org.hl7.fhir.r4.model.MeasureReport;
import org.hl7.fhir.r4.model.StringType;
import org.opencds.cqf.cql.engine.data.DataProvider;
import org.opencds.cqf.cql.engine.fhir.terminology.R4FhirTerminologyProvider;
import org.opencds.cqf.cql.engine.terminology.TerminologyProvider;
import org.opencds.cqf.cql.evaluator.builder.DataProviderFactory;
import org.opencds.cqf.cql.evaluator.cql2elm.content.LibraryContentProvider;
import org.opencds.cqf.cql.evaluator.fhir.dal.FhirDal;
import org.opencds.cqf.ruler.cql.JpaDataProviderFactory;
import org.opencds.cqf.ruler.cql.JpaFhirDalFactory;
import org.opencds.cqf.ruler.cql.JpaLibraryContentProviderFactory;
import org.opencds.cqf.ruler.cql.JpaTerminologyProviderFactory;
import org.opencds.cqf.ruler.provider.DaoRegistryOperationProvider;
import org.opencds.cqf.ruler.utility.Clients;
import org.springframework.beans.factory.annotation.Autowired;

import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.Operation;
import ca.uhn.fhir.rest.annotation.OperationParam;
import ca.uhn.fhir.rest.api.server.RequestDetails;

public class MeasureEvaluateProvider extends DaoRegistryOperationProvider {
	@Autowired
	private JpaTerminologyProviderFactory jpaTerminologyProviderFactory;

	@Autowired
	private JpaDataProviderFactory jpaDataProviderFactory;

	@Autowired
	private DataProviderFactory dataProviderFactory;

	@Autowired
	private JpaLibraryContentProviderFactory libraryContentProviderFactory;

	@Autowired
	private JpaFhirDalFactory fhirDalFactory;

	@Autowired
	private Map<org.cqframework.cql.elm.execution.VersionedIdentifier, org.cqframework.cql.elm.execution.Library> globalLibraryCache;

	/**
	 * Implements the <a href=
	 * "https://www.hl7.org/fhir/operation-measure-evaluate-measure.html">$evaluate-measure</a>
	 * operation found in the
	 * <a href="http://www.hl7.org/fhir/clinicalreasoning-module.html">FHIR Clinical
	 * Reasoning Module</a>. This implementation aims to be compatible with the CQF
	 * IG.
	 * 
	 * @param requestDetails The details (such as tenant) of this request. Usually
	 *                       auto-populated HAPI.
	 * @param theId          the Id of the Measure to evaluate
	 * @param periodStart    The start of the reporting period
	 * @param periodEnd      The end of the reporting period
	 * @param reportType     The type of MeasureReport to generate
	 * @param subject        the subject to use for the evaluation
	 * @param practitioner   the practitioner to use for the evaluation
	 * @param lastReceivedOn the date the results of this measure were last
	 *                       received.
	 * @param productLine    the productLine (e.g. Medicare, Medicaid, etc) to use
	 *                       for the evaluation. This is a non-standard parameter.
	 * @param additionalData the data bundle containing additional data
	 * @return the calculated MeasureReport
	 */
	@SuppressWarnings("squid:S00107") // warning for greater than 7 parameters
	@Description(shortDefinition = "$evaluate-measure", value = "Implements the <a href=\"https://www.hl7.org/fhir/operation-measure-evaluate-measure.html\">$evaluate-measure</a> operation found in the <a href=\"http://www.hl7.org/fhir/clinicalreasoning-module.html\">FHIR Clinical Reasoning Module</a>. This implementation aims to be compatible with the CQF IG.", example = "Measure/example/$evaluate-measure?subject=Patient/123&periodStart=2019&periodEnd=2020")
	@Operation(name = "$evaluate-measure", idempotent = true, type = Measure.class)
	public MeasureReport evaluateMeasure(RequestDetails requestDetails, @IdParam IdType theId,
													 @OperationParam(name = "periodStart") String periodStart,
													 @OperationParam(name = "periodEnd") String periodEnd,
													 @OperationParam(name = "reportType") String reportType,
													 @OperationParam(name = "subject") String subject,
													 @OperationParam(name = "practitioner") String practitioner,
													 @OperationParam(name = "lastReceivedOn") String lastReceivedOn,
													 @OperationParam(name = "productLine") String productLine,
													 @OperationParam(name = "additionalData") Bundle additionalData,
													 @OperationParam(name = "terminologyEndpoint") Endpoint terminologyEndpoint) {

		Measure measure = read(theId);

		TerminologyProvider terminologyProvider;

		if (terminologyEndpoint != null) {
			IGenericClient client = Clients.forEndpoint(getFhirContext(), terminologyEndpoint);
			terminologyProvider = new R4FhirTerminologyProvider(client);
		} else {
			terminologyProvider = this.jpaTerminologyProviderFactory.create(requestDetails);
		}

		DataProvider dataProvider = this.jpaDataProviderFactory.create(requestDetails, terminologyProvider);
		LibraryContentProvider libraryContentProvider = this.libraryContentProviderFactory.create(requestDetails);
		FhirDal fhirDal = this.fhirDalFactory.create(requestDetails);

		org.opencds.cqf.cql.evaluator.measure.r4.R4MeasureProcessor measureProcessor = new org.opencds.cqf.cql.evaluator.measure.r4.R4MeasureProcessor(
			null, this.dataProviderFactory, null, null, null, terminologyProvider, libraryContentProvider, dataProvider, fhirDal, null,
			this.globalLibraryCache);

		MeasureReport report = measureProcessor.evaluateMeasure(measure.getUrl(), periodStart, periodEnd, reportType,
			subject, null, lastReceivedOn, null, null, null, additionalData);

		if (productLine != null) {
			Extension ext = new Extension();
			ext.setUrl("http://hl7.org/fhir/us/cqframework/cqfmeasures/StructureDefinition/cqfm-productLine");
			ext.setValue(new StringType(productLine));<commit_msg>add remote terminology endpoint in measureProcessor evaluate measure<commit_after>package org.opencds.cqf.ruler.cr.r4.provider;

import java.util.Map;

import ca.uhn.fhir.rest.client.api.IGenericClient;
import org.hl7.fhir.r4.model.Bundle;
import org.hl7.fhir.r4.model.Endpoint;
import org.hl7.fhir.r4.model.Extension;
import org.hl7.fhir.r4.model.IdType;
import org.hl7.fhir.r4.model.Measure;
import org.hl7.fhir.r4.model.MeasureReport;
import org.hl7.fhir.r4.model.StringType;
import org.opencds.cqf.cql.engine.data.DataProvider;
import org.opencds.cqf.cql.engine.fhir.terminology.R4FhirTerminologyProvider;
import org.opencds.cqf.cql.engine.terminology.TerminologyProvider;
import org.opencds.cqf.cql.evaluator.builder.DataProviderFactory;
import org.opencds.cqf.cql.evaluator.cql2elm.content.LibraryContentProvider;
import org.opencds.cqf.cql.evaluator.fhir.dal.FhirDal;
import org.opencds.cqf.ruler.cql.JpaDataProviderFactory;
import org.opencds.cqf.ruler.cql.JpaFhirDalFactory;
import org.opencds.cqf.ruler.cql.JpaLibraryContentProviderFactory;
import org.opencds.cqf.ruler.cql.JpaTerminologyProviderFactory;
import org.opencds.cqf.ruler.provider.DaoRegistryOperationProvider;
import org.opencds.cqf.ruler.utility.Clients;
import org.springframework.beans.factory.annotation.Autowired;

import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.Operation;
import ca.uhn.fhir.rest.annotation.OperationParam;
import ca.uhn.fhir.rest.api.server.RequestDetails;

public class MeasureEvaluateProvider extends DaoRegistryOperationProvider {
	@Autowired
	private JpaTerminologyProviderFactory jpaTerminologyProviderFactory;

	@Autowired
	private JpaDataProviderFactory jpaDataProviderFactory;

	@Autowired
	private DataProviderFactory dataProviderFactory;

	@Autowired
	private JpaLibraryContentProviderFactory libraryContentProviderFactory;

	@Autowired
	private JpaFhirDalFactory fhirDalFactory;

	@Autowired
	private Map<org.cqframework.cql.elm.execution.VersionedIdentifier, org.cqframework.cql.elm.execution.Library> globalLibraryCache;

	/**
	 * Implements the <a href=
	 * "https://www.hl7.org/fhir/operation-measure-evaluate-measure.html">$evaluate-measure</a>
	 * operation found in the
	 * <a href="http://www.hl7.org/fhir/clinicalreasoning-module.html">FHIR Clinical
	 * Reasoning Module</a>. This implementation aims to be compatible with the CQF
	 * IG.
	 * 
	 * @param requestDetails The details (such as tenant) of this request. Usually
	 *                       auto-populated HAPI.
	 * @param theId          the Id of the Measure to evaluate
	 * @param periodStart    The start of the reporting period
	 * @param periodEnd      The end of the reporting period
	 * @param reportType     The type of MeasureReport to generate
	 * @param subject        the subject to use for the evaluation
	 * @param practitioner   the practitioner to use for the evaluation
	 * @param lastReceivedOn the date the results of this measure were last
	 *                       received.
	 * @param productLine    the productLine (e.g. Medicare, Medicaid, etc) to use
	 *                       for the evaluation. This is a non-standard parameter.
	 * @param additionalData the data bundle containing additional data
	 * @return the calculated MeasureReport
	 */
	@SuppressWarnings("squid:S00107") // warning for greater than 7 parameters
	@Description(shortDefinition = "$evaluate-measure", value = "Implements the <a href=\"https://www.hl7.org/fhir/operation-measure-evaluate-measure.html\">$evaluate-measure</a> operation found in the <a href=\"http://www.hl7.org/fhir/clinicalreasoning-module.html\">FHIR Clinical Reasoning Module</a>. This implementation aims to be compatible with the CQF IG.", example = "Measure/example/$evaluate-measure?subject=Patient/123&periodStart=2019&periodEnd=2020")
	@Operation(name = "$evaluate-measure", idempotent = true, type = Measure.class)
	public MeasureReport evaluateMeasure(RequestDetails requestDetails, @IdParam IdType theId,
													 @OperationParam(name = "periodStart") String periodStart,
													 @OperationParam(name = "periodEnd") String periodEnd,
													 @OperationParam(name = "reportType") String reportType,
													 @OperationParam(name = "subject") String subject,
													 @OperationParam(name = "practitioner") String practitioner,
													 @OperationParam(name = "lastReceivedOn") String lastReceivedOn,
													 @OperationParam(name = "productLine") String productLine,
													 @OperationParam(name = "additionalData") Bundle additionalData,
													 @OperationParam(name = "terminologyEndpoint") Endpoint terminologyEndpoint) {

		Measure measure = read(theId);

		TerminologyProvider terminologyProvider;

		if (terminologyEndpoint != null) {
			IGenericClient client = Clients.forEndpoint(getFhirContext(), terminologyEndpoint);
			terminologyProvider = new R4FhirTerminologyProvider(client);
		} else {
			terminologyProvider = this.jpaTerminologyProviderFactory.create(requestDetails);
		}

		DataProvider dataProvider = this.jpaDataProviderFactory.create(requestDetails, terminologyProvider);
		LibraryContentProvider libraryContentProvider = this.libraryContentProviderFactory.create(requestDetails);
		FhirDal fhirDal = this.fhirDalFactory.create(requestDetails);

		org.opencds.cqf.cql.evaluator.measure.r4.R4MeasureProcessor measureProcessor = new org.opencds.cqf.cql.evaluator.measure.r4.R4MeasureProcessor(
			null, this.dataProviderFactory, null, null, null, terminologyProvider, libraryContentProvider, dataProvider, fhirDal, null,
			this.globalLibraryCache);

		MeasureReport report = measureProcessor.evaluateMeasure(measure.getUrl(), periodStart, periodEnd, reportType,
			subject, null, lastReceivedOn, null, terminologyEndpoint, null, additionalData);

		if (productLine != null) {
			Extension ext = new Extension();
			ext.setUrl("http://hl7.org/fhir/us/cqframework/cqfmeasures/StructureDefinition/cqfm-productLine");
			ext.setValue(new StringType(productLine));
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