<commit_before>{
    "title": "Base characterization",
    "description": "Schema for submitting a characterization of an object.",
    "id": "/profiles/characterization.json",
    "$schema": "http://json-schema.org/draft-04/schema#",
    "type": "object",
    "required": [ "award", "lab", "characterizes" ],
    "additionalProperties": false,
    "mixinProperties": [
        { "$ref": "mixins.json#/schema_version" },
        { "$ref": "mixins.json#/uuid" },
        { "$ref": "mixins.json#/aliases" },
        { "$ref": "mixins.json#/attachment" },
        { "$ref": "mixins.json#/attribution" },
        { "$ref": "mixins.json#/submitted" }
    ],
    "properties": {
        "schema_version": {
            "hidden comment": "Bump the default in the subclasses."
        },
        "characterizes": {
            "description": "The specific entity for which the characterization applies.",
            "type": "string"
        },
        "characterization_method": {
            "title": "Method",
            "description": "Experimental method of the characterization.",
            "type": "string",
            "enum": [
                "western blot",
                "western blot after IP",
                "immunoprecipitation",
                "immunofluorescence",
                "knockdowns",
                "mass spectrometry after IP",
                "chIP comparison",
                "tagged epitopes",
                "motif enrichment",
                "dot blot",
                "peptide ELISA",
                "competitor peptides",
                "mutant organisms",
                "mutant histones",
                "annotation enrichment",
                "XXX NEED REVIEW",
                "Western blot, Western blot after IP",
                "immunoblot"
            ]
        },
        "caption": {
            "title": "Caption",
            "description": "A plain text description about the characterization. Characterizations for antibodies should include brief methods, expected MW, cell line(s), labels and justification for acceptance, if necessary",
            "type": "string",
            "default": ""
        },
        "date": {
            "title": "Date",
            "description": "The date that the characterization was run on.",
            "comment": "Date can be submitted in as YYYY-MM-DD or YYYY-MM-DDTHH:MM:SS.",
            "type": "string",
            "format": "date"
        },
        "references": {
            "title": "References",
            "description": "The Pubmed identifiers used as references for the characterization, if previously published.",
            "type": "array",
            "default": [],
            "reference": {
                "title": "Reference",
                "description": "The Pubmed identifier used as a reference for the characterization, if previously published",
                "type": "string",
                "pattern": "^PMID:[0-9]+$"
            }
        },
        "status": {
            "title": "Approval status",
            "description": "The current state of the characterization.",
            "comment": "Do not submit, value is assigned by the DCC.",
            "type": "string",
            "default": "INCOMPLETE",
            "enum" : [
                "APPROVED",
                "SUBMITTED",
                "UNSUBMITTED",
                "FAILED",
                "INCOMPLETE",
                "DELETED"
            ]
        },
        "comment": {
            "title": "Comment",
            "description": "Additional information pertaining to the characterization.",
            "type": "string",
            "default": "",
            "permission": "review"
        }
    }
}<commit_msg>Updated Chacaterization status.<commit_after>{
    "title": "Base characterization",
    "description": "Schema for submitting a characterization of an object.",
    "id": "/profiles/characterization.json",
    "$schema": "http://json-schema.org/draft-04/schema#",
    "type": "object",
    "required": [ "award", "lab", "characterizes" ],
    "additionalProperties": false,
    "mixinProperties": [
        { "$ref": "mixins.json#/schema_version" },
        { "$ref": "mixins.json#/uuid" },
        { "$ref": "mixins.json#/aliases" },
        { "$ref": "mixins.json#/attachment" },
        { "$ref": "mixins.json#/attribution" },
        { "$ref": "mixins.json#/submitted" }
    ],
    "properties": {
        "schema_version": {
            "hidden comment": "Bump the default in the subclasses."
        },
        "characterizes": {
            "description": "The specific entity for which the characterization applies.",
            "type": "string"
        },
        "characterization_method": {
            "title": "Method",
            "description": "Experimental method of the characterization.",
            "type": "string",
            "enum": [
                "western blot",
                "western blot after IP",
                "immunoprecipitation",
                "immunofluorescence",
                "knockdowns",
                "mass spectrometry after IP",
                "chIP comparison",
                "tagged epitopes",
                "motif enrichment",
                "dot blot",
                "peptide ELISA",
                "competitor peptides",
                "mutant organisms",
                "mutant histones",
                "annotation enrichment",
                "XXX NEED REVIEW",
                "Western blot, Western blot after IP",
                "immunoblot"
            ]
        },
        "caption": {
            "title": "Caption",
            "description": "A plain text description about the characterization. Characterizations for antibodies should include brief methods, expected MW, cell line(s), labels and justification for acceptance, if necessary",
            "type": "string",
            "default": ""
        },
        "date": {
            "title": "Date",
            "description": "The date that the characterization was run on.",
            "comment": "Date can be submitted in as YYYY-MM-DD or YYYY-MM-DDTHH:MM:SS.",
            "type": "string",
            "format": "date"
        },
        "references": {
            "title": "References",
            "description": "The Pubmed identifiers used as references for the characterization, if previously published.",
            "type": "array",
            "default": [],
            "reference": {
                "title": "Reference",
                "description": "The Pubmed identifier used as a reference for the characterization, if previously published",
                "type": "string",
                "pattern": "^PMID:[0-9]+$"
            }
        },
        "status": {
            "title": "Approval status",
            "description": "The current state of the characterization.",
            "comment": "Do not submit, value is assigned by the DCC.",
            "type": "string",
            "default": "IN PROGRESS",
            "enum" : [
                "IN PROGRESS",
                "PENDING DCC REVIEW",
                "COMPLIANT",
                "NOT COMPLIANT",
                "NOT REVIEWED",
                "WITHDRAWN BY LAB"
                "DELETED"
            ]
        },
        "comment": {
            "title": "Comment",
            "description": "Additional information pertaining to the characterization.",
            "type": "string",
            "default": "",
            "permission": "review"
        }
    }
}
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