<commit_before>/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkComposeDiffeomorphismsImageFilter_hxx
#define __itkComposeDiffeomorphismsImageFilter_hxx

#include "itkComposeDiffeomorphismsImageFilter.h"

#include "itkImageRegionConstIterator.h"
#include "itkImageRegionIteratorWithIndex.h"
#include "itkVectorLinearInterpolateImageFunction.h"

namespace itk
{
/*
 * ComposeDiffeomorphismsImageFilter class definitions
 */
template <class InputImage, class TOutputImage>
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::ComposeDiffeomorphismsImageFilter()
{
  this->SetNumberOfRequiredInputs( 2 );

  typedef VectorLinearInterpolateImageFunction
    <InputFieldType, RealType> DefaultInterpolatorType;
  typename DefaultInterpolatorType::Pointer interpolator
    = DefaultInterpolatorType::New();
  this->m_Interpolator = interpolator;
}

template <class InputImage, class TOutputImage>
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::~ComposeDiffeomorphismsImageFilter()
{
}

template <class InputImage, class TOutputImage>
void
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::SetInterpolator( InterpolatorType *interpolator )
{
  itkDebugMacro( "setting Interpolator to " << interpolator );
  if( this->m_Interpolator != interpolator )
    {
    this->m_Interpolator = interpolator;
    this->Modified();
    if( !this->GetDisplacementField() )
      {
      this->m_Interpolator->SetInputImage( this->GetInput( 0 ) );
      }
    }
}

template <class InputImage, class TOutputImage>
void
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::BeforeThreadedGenerateData()
{
  VectorType zeroVector( 0.0 );

  this->AllocateOutputs();
  this->GetOutput()->FillBuffer( zeroVector );
}

template <class InputImage, class TOutputImage>
void
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::ThreadedGenerateData( const RegionType & region, ThreadIdType itkNotUsed( threadId ) )
{
  VectorType zeroVector( 0.0 );

  typename OutputFieldType::Pointer output = this->GetOutput();

  ImageRegionConstIterator<InputFieldType>      ItW( this->GetWarpingField(), region );
  ImageRegionIteratorWithIndex<OutputFieldType> ItF( output, region );
  for( ItW.GoToBegin(), ItF.GoToBegin(); !ItW.IsAtEnd(); ++ItW, ++ItF )
    {
    PointType point1;
    output->TransformIndexToPhysicalPoint( ItF.GetIndex(), point1 );

    typename ImageRegionConstIterator<InputFieldType>::PixelType tmpWarp = ItW.Get();
    PointType point2 = point1;
    for( unsigned int d = 0; d < point2.PointDimension; d++ )
      {
      point2[d] += tmpWarp[d];
      }

    typename InterpolatorType::OutputType displacement;
    if( this->m_Interpolator->IsInsideBuffer( point2 ) )
      {
      displacement = this->m_Interpolator->Evaluate( point2 );
      typename ImageRegionIteratorWithIndex<OutputFieldType>::PixelType tmpOut;
      tmpOut = ( point2 + displacement ) - point1;
      ItF.Set( tmpOut );
      }
    }
}

template <class InputImage, class TOutputImage>
void
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::PrintSelf( std::ostream& os, Indent indent ) const
{
  Superclass::PrintSelf( os, indent );<commit_msg>DOC: IJ compatibility.<commit_after>/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkComposeDiffeomorphismsImageFilter_hxx
#define __itkComposeDiffeomorphismsImageFilter_hxx

#include "itkComposeDiffeomorphismsImageFilter.h"

#include "itkImageRegionConstIterator.h"
#include "itkImageRegionIteratorWithIndex.h"
#include "itkVectorLinearInterpolateImageFunction.h"

namespace itk
{
/*
 * ComposeDiffeomorphismsImageFilter class definitions
 */
template <class InputImage, class TOutputImage>
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::ComposeDiffeomorphismsImageFilter()
{
  this->SetNumberOfRequiredInputs( 2 );

  typedef VectorLinearInterpolateImageFunction
    <InputFieldType, RealType> DefaultInterpolatorType;
  typename DefaultInterpolatorType::Pointer interpolator
    = DefaultInterpolatorType::New();
  this->m_Interpolator = interpolator;
}

template <class InputImage, class TOutputImage>
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::~ComposeDiffeomorphismsImageFilter()
{
}

template <class InputImage, class TOutputImage>
void
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::SetInterpolator( InterpolatorType *interpolator )
{
  itkDebugMacro( "setting Interpolator to " << interpolator );
  if( this->m_Interpolator != interpolator )
    {
    this->m_Interpolator = interpolator;
    this->Modified();
    if( !this->GetDisplacementField() )
      {
      this->m_Interpolator->SetInputImage( this->GetInput( 0 ) );
      }
    }
}

template <class InputImage, class TOutputImage>
void
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::BeforeThreadedGenerateData()
{
  VectorType zeroVector( 0.0 );

  this->AllocateOutputs();
  this->GetOutput()->FillBuffer( zeroVector );
}

template <class InputImage, class TOutputImage>
void
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::ThreadedGenerateData( const RegionType & region, ThreadIdType itkNotUsed( threadId ) )
{
  VectorType zeroVector( 0.0 );

  typename OutputFieldType::Pointer output = this->GetOutput();

  ImageRegionConstIterator<InputFieldType>      ItW( this->GetWarpingField(), region );
  ImageRegionIteratorWithIndex<OutputFieldType> ItF( output, region );
  for( ItW.GoToBegin(), ItF.GoToBegin(); !ItW.IsAtEnd(); ++ItW, ++ItF )
    {
    PointType point1;
    output->TransformIndexToPhysicalPoint( ItF.GetIndex(), point1 );

    typename InputFieldType::PixelType tmpWarp = ItW.Get();
    PointType point2 = point1;
    for( unsigned int d = 0; d < point2.PointDimension; d++ )
      {
      point2[d] += tmpWarp[d];
      }

    typename InterpolatorType::OutputType displacement;
    if( this->m_Interpolator->IsInsideBuffer( point2 ) )
      {
      displacement = this->m_Interpolator->Evaluate( point2 );
      typename OutputFieldType::PixelType tmpOut;
      tmpOut = ( point2 + displacement ) - point1;
      ItF.Set( tmpOut );
      }
    }
}

template <class InputImage, class TOutputImage>
void
ComposeDiffeomorphismsImageFilter<InputImage, TOutputImage>
::PrintSelf( std::ostream& os, Indent indent ) const
{
  Superclass::PrintSelf( os, indent );
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