<commit_before>[Protocol]
# time bins in minutes for plotting, integer
bin: 30

# lights on and off times, integers 0-24
lights_on: 9
lights_off: 21

# day on which DD begins, integer, loading date = 0
DD:

# day to check for dead flies, integer, loading date = 0
# will check entire 24h period for dead flies
check_day:

# environmental monitor number, integer, ex. 26
DEnM:

# effector, for use on plots
# no spaces or punctuation here (except _, -)
effector:

# comma separated list of control_genotypes, string
# ex. FCF_pBDPGAL4U_1500437
# used for comparison on plots
control_genotype: FCF_pBDPGAL4U_1500437

# gender, for use on plots, ['m','f','x'], x is unknown
gender:

[Genotypes]
# genotype: monitorOne.firstChannel-lastChannel, monitorTwo.firstChannel-lastChannel
# no spaces or punctuation in genotype (except _, -)
# other weird characters might cause problems here too; beware
# no spaces between elements in location
# ex. FCF_pBDPGAL4U_1500437: 68.25-32, 69.1-16<commit_msg>documented protocol file comments<commit_after>[Protocol]
# time bins in minutes for plotting, integer
bin: 30

# lights on and off times, integers 0-24
lights_on: 9
lights_off: 21

# day on which DD begins, integer, loading date = 0
DD:

# day to check for dead flies, integer, loading date = 0
# will check entire 24h period for dead flies
check_day:

# environmental monitor number, integer, ex. 26
DEnM:

# effector, for use on plots
# no spaces or punctuation here (except _, -)
# if you don't want to include an effector, use a placeholder
# like a single underscore
effector:

# comma separated list of control_genotypes, string
# ex. FCF_pBDPGAL4U_1500437
# used for comparison on plots
# if you don't want to include a control, use a placeholder
# like a single underscore
control_genotype: FCF_pBDPGAL4U_1500437

# gender, for use on plots, ['m','f','x'], x is unknown
gender:

[Genotypes]
# genotype: monitorOne.firstChannel-lastChannel, monitorTwo.firstChannel-lastChannel
# no spaces or punctuation in genotype (except _, -)
# other weird characters might cause problems here too; beware
# no spaces between elements in location
# ex. FCF_pBDPGAL4U_1500437: 68.25-32, 69.1-16
{'fraction_non_alphanumeric': 0.0798165137614679, 'fraction_numerical': 0.044954128440366975, 'mean_word_length': 4.831550802139038, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3790108', 'n_tokens_mistral': 768, 'n_tokens_neox': 669, 'n_words': 280}