<commit_before>import os
import smbl

from .fastafile import *

EXAMPLE_1  = fasta_file("Mycobacterium_tuberculosis","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Mycobacterium_tuberculosis_H37Rv_uid170532/NC_018143.fna")
EXAMPLE_2  = fasta_file("Chlamydia_trachomatis","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Chlamydia_trachomatis_RC_L2_s_3_uid213390/NC_021897.fna")
EXAMPLE_3  = fasta_file("Borrelia_garinii","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Borrelia_garinii_BgVir_uid162165/NC_017717.fna")

EXAMPLE_42 = fasta_file("Human_chr_21","http://hgdownload.cse.ucsc.edu/goldenpath/hg19/chromosomes/chr21.fa.gz")

EXAMPLE = EXAMPLE_1

HUMAN_HG38 = fasta_file("hg38","http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.2bit")
MOUSE_MM10 = fasta_file("mm10","http://hgdownload.cse.ucsc.edu/goldenPath/mm10/bigZips/mm10.2bit")
<commit_msg>Chimpanzee genome<commit_after>import os
import smbl

from .fastafile import *

EXAMPLE_1  = fasta_file("Mycobacterium_tuberculosis","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Mycobacterium_tuberculosis_H37Rv_uid170532/NC_018143.fna")
EXAMPLE_2  = fasta_file("Chlamydia_trachomatis","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Chlamydia_trachomatis_RC_L2_s_3_uid213390/NC_021897.fna")
EXAMPLE_3  = fasta_file("Borrelia_garinii","ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Borrelia_garinii_BgVir_uid162165/NC_017717.fna")

EXAMPLE_42 = fasta_file("Human_chr_21","http://hgdownload.cse.ucsc.edu/goldenpath/hg19/chromosomes/chr21.fa.gz")

EXAMPLE = EXAMPLE_1

HUMAN_HG38    = fasta_file("hg38","http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.2bit")
MOUSE_MM10    = fasta_file("mm10","http://hgdownload.cse.ucsc.edu/goldenPath/mm10/bigZips/mm10.2bit")
CHIMP_PANTRO4 = fasta_file("panTro4","http://hgdownload.cse.ucsc.edu/goldenPath/panTro4/bigZips/panTro4.2bit")

{'fraction_non_alphanumeric': 0.14200217627856365, 'fraction_numerical': 0.07889009793253536, 'mean_word_length': 6.356, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 7, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4702222', 'n_tokens_mistral': 965, 'n_tokens_neox': 793, 'n_words': 45}