<commit_before>
Pype9
=====


"PYthon PipelinEs for 9ml (Pype9)" is a collection of Python pipelines to
simulate neuron, and neuron network, models described in NineML_ using either
Neuron_ or NEST_ as simulator backends.

Pype9 has a :ref:`Command Line Interface` (CLI), which allows experiments to be
simulated directly from NineML_ descriptions (i.e. without scripting).
Alternatively, simulations can be embedded within Python scripts with
Pype9's accessible :ref:`Public API`.


User/Developer Guide
--------------------

.. toctree::
    :maxdepth: 2 

    installation
    unsupported    
    cli
    scripting
    api
    extending
    getting_help

.. _NineML: http://nineml.net
.. _`NineML Python Library`: http://nineml.readthedocs.io
.. _`NineML specification`: http://nineml.net/specification/
.. _NEST: http://nest-simulator.org<commit_msg>changed order of index in docs<commit_after>
Pype9
=====


"PYthon PipelinEs for 9ml (Pype9)" is a collection of Python pipelines to
simulate neuron, and neuron network, models described in NineML_ using either
Neuron_ or NEST_ as simulator backends.

Pype9 has a :ref:`Command Line Interface` (CLI), which allows experiments to be
simulated directly from NineML_ descriptions (i.e. without scripting).
Alternatively, simulations can be embedded within Python scripts with
Pype9's accessible :ref:`Public API`.


User/Developer Guide
--------------------

.. toctree::
    :maxdepth: 2 

    installation
    cli
    scripting
    api
    extending
    unsupported
    getting_help

.. _NineML: http://nineml.net
.. _`NineML Python Library`: http://nineml.readthedocs.io
.. _`NineML specification`: http://nineml.net/specification/
.. _NEST: http://nest-simulator.org
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