<commit_before><commit_msg>Include zibra-specific version of auspice at /zibra/.<commit_after>---
title: nextstrain / zibra
layout: auspice_zika
virus: Zika
resolution:
coloring: region, date
gtplaceholder: Genomic positions...
freqdefault:
---

<script>
var file_prefix = "Zika_";
var	vaccineChoice = {};
var vaccineStrains = Object.keys(vaccineChoice);
var reference_viruses= {};
var branch_labels=false;
var restrictTo = {"authors": "ZiBRA", "region": "all"};
var time_window = 3.0;
var full_data_time_window = 1.5;
var time_ticks=[2013.0, 2013.5, 2014.0, 2014.5, 2015.0, 2015.5, 2016.0];
var dfreq_dn = 2;
var LBItime_window = 0.5;
var LBItau = 0.0005;
var regions = [
["french_polynesia",   "#403CC5"],
["american_samoa",	   "#3F50CC"],
["china",			   "#3F63CF"],
["brazil",  		   "#5CA7A5"],
["colombia",  		   "#66AE96"],
["suriname",  		   "#70B487"],
["venezuela",          "#7CB879"],
["panama",             "#B2BD4D"],
["honduras",           "#BFBB48"],
["guatemala",  		   "#CBB742"],
["mexico",             "#D5B03F"],
["martinique",  	   "#DEA73C"],
["puerto_rico",  	   "#E39B39"],
["dominican_republic", "#E68B35"],
["haiti",  			   "#E67932"]
];
// Asia: "#403CC5", "#3F50CC", "#3F63CF", "#4374CD", "#4784C8", "#4D92BF", "#549DB2"
// South America: "#5CA7A5", "#66AE96", "#70B487", "#7CB879", "#89BB6B", "#96BD60", "#A4BE56",
// Central America: "#B2BD4D", "#BFBB48", "#CBB742", "#D5B03F", "#DEA73C", "#E39B39", "#E68B35", "#E67932", "#E4632E", "#E04C29"


// Americas: "#72B485", "#81BA72", "#92BC63", "#A4BE56", "#B6BD4C", "#C6B944", "#D4B13F", "#DEA63B", "#E59637", "#E67E33", "#E4632E"
var mutType = 'nuc';
var default_gene = 'nuc';
var plot_frequencies = false;
</script>
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