<commit_before>import re
import glob

from CGATReport.Tracker import *
import CGATReport.Utils

P = CGATReport.Utils.get_parameters()

from CGATPipelines.PipelineGeneset import mapUCSCToEnsembl
import CGATPipelines.PipelineTracks as PipelineTracks

# get from config file
UCSC_DATABASE = P["genome"]

###################################################################
###################################################################
# parameterization

EXPORTDIR = P.get(
    'rnaseqdiffexpression_exportdir', P.get('exportdir', 'export'))
DATADIR = P.get('rnaseqdiffexpression_datadir', P.get('datadir', '.'))
DATABASE = P.get('rnaseqdiffexpression_backend', P.get(
    'sql_backend', 'sqlite:///./csvdb'))

DATABASE_ANNOTATIONS = P['annotations_database']

###################################################################
# cf. pipeline_rnaseq.py
# This should be automatically gleaned from pipeline_rnaseq.py
###################################################################

<commit_msg>{AH} pep8<commit_after>import re
import glob
from CGATReport.Tracker import *
import CGATReport.Utils
from CGATPipelines.PipelineGeneset import mapUCSCToEnsembl
import CGATPipelines.PipelineTracks as PipelineTracks

# get from config file
P = CGATReport.Utils.get_parameters()
UCSC_DATABASE = P["genome"]

###################################################################
###################################################################
# parameterization

EXPORTDIR = P.get(
    'rnaseqdiffexpression_exportdir', P.get('exportdir', 'export'))
DATADIR = P.get('rnaseqdiffexpression_datadir', P.get('datadir', '.'))
DATABASE = P.get('rnaseqdiffexpression_backend', P.get(
    'sql_backend', 'sqlite:///./csvdb'))

DATABASE_ANNOTATIONS = P['annotations_database']

###################################################################
# cf. pipeline_rnaseq.py
# This should be automatically gleaned from pipeline_rnaseq.py
###################################################################


{'fraction_non_alphanumeric': 0.35223281485198193, 'fraction_numerical': 0.0005017561465127947, 'mean_word_length': 8.632850241545894, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6445210', 'n_tokens_mistral': 566, 'n_tokens_neox': 538, 'n_words': 101}