<commit_before>/*===================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center,
Division of Medical and Biological Informatics.
All rights reserved.

This software is distributed WITHOUT ANY WARRANTY; without
even the implied warranty of MERCHANTABILITY or FITNESS FOR
A PARTICULAR PURPOSE.

See LICENSE.txt or http://www.mitk.org for details.

===================================================================*/


#ifndef __mitkTractAnalyzer_h_
#define __mitkTractAnalyzer_h_

#include "QuantificationExports.h"
#include <itkImage.h>
#include "mitkImage.h"
#include "mitkImageCast.h"

#include <mitkTbssRoiImage.h>
#include <mitkPointSet.h>


namespace mitk{
/** \class TractAnalyzer
 */


class Quantification_EXPORT TractAnalyzer
{

public:


  TractAnalyzer();
  ~TractAnalyzer() {}


  /** Image type definitions */<commit_msg>added to the documentation of mitkTractAnalyzer<commit_after>/*===================================================================

The Medical Imaging Interaction Toolkit (MITK)

Copyright (c) German Cancer Research Center,
Division of Medical and Biological Informatics.
All rights reserved.

This software is distributed WITHOUT ANY WARRANTY; without
even the implied warranty of MERCHANTABILITY or FITNESS FOR
A PARTICULAR PURPOSE.

See LICENSE.txt or http://www.mitk.org for details.

===================================================================*/


#ifndef __mitkTractAnalyzer_h_
#define __mitkTractAnalyzer_h_

#include "QuantificationExports.h"
#include <itkImage.h>
#include "mitkImage.h"
#include "mitkImageCast.h"

#include <mitkTbssRoiImage.h>
#include <mitkPointSet.h>


namespace mitk{
/**
  * \brief Creates a region of interest for tract-specific analysis of existing TBSS data
  *
  * This class needs a 3D image (typically a mean FA skeleton as produced by the standard TBSS pipeline of FSL)
  * and a user-defined point set defining the points through which the region of interest should pass.
  */


class Quantification_EXPORT TractAnalyzer
{

public:


  TractAnalyzer();
  ~TractAnalyzer() {}


  /** Image type definitions */
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