<commit_before>class Igvtools < Formula
  desc "Utilities for preprocessing data files for IGV"
  homepage "https://www.broadinstitute.org/software/igv"
  url "https://github.com/igvteam/igv/archive/v2.3.98.tar.gz"
  sha256 "de22b1e646bd2290757e617377b1c598f419e292d28f049ede958d0f08bffde5"
  head "https://github.com/igvteam/igv.git"

  bottle do
    cellar :any_skip_relocation
    sha256 "a395a25dd80489484271d89ca33e33813ee4530bbc30ba555c10ef1d4750fae3" => :sierra
    sha256 "e060e87ce4ebc61a9a4da50097b21dada210d317dc047c9ccd77899610647047" => :el_capitan
    sha256 "78788edbc76b5ac11aa4b42202a4e68e287df575b1664e9e71349b4fe558a228" => :yosemite
    sha256 "04b0f47824ce14364fd15614a8221b13a6b4145aefea2de95158f94c95e7ed71" => :x86_64_linux
  end

  # tag "bioinformatics"

  depends_on "ant" => :build
  depends_on :java

  def install
    system "ant", "-lib", "ant/bcel-5.2.jar", "-buildfile", "scripts/build-tools.xml", "-Dversion=#{version}"
    libexec.install "igvtools-dist/igvtools.jar"
    bin.write_jar_script libexec/"igvtools.jar", "igvtools"
    pkgshare.install "genomes"
  end

  test do
    system bin/"igvtools"
  end
end<commit_msg>igvtools: update 2.3.98 bottle.<commit_after>class Igvtools < Formula
  desc "Utilities for preprocessing data files for IGV"
  homepage "https://www.broadinstitute.org/software/igv"
  url "https://github.com/igvteam/igv/archive/v2.3.98.tar.gz"
  sha256 "de22b1e646bd2290757e617377b1c598f419e292d28f049ede958d0f08bffde5"
  head "https://github.com/igvteam/igv.git"

  bottle do
    cellar :any_skip_relocation
    sha256 "835505a2ecc16d2e8ab3a9a506838a5e14dfbd6514c0a7426a59da24a76c49c7" => :sierra
    sha256 "fff198a48e915319e721749da1d105acb5860ebe06fe8197a5cf87d502195408" => :el_capitan
    sha256 "1d49e1908b8c9bc055d750c5add930fbed601998e10219924dbdd5354ea6ec91" => :yosemite
  end

  # tag "bioinformatics"

  depends_on "ant" => :build
  depends_on :java

  def install
    system "ant", "-lib", "ant/bcel-5.2.jar", "-buildfile", "scripts/build-tools.xml", "-Dversion=#{version}"
    libexec.install "igvtools-dist/igvtools.jar"
    bin.write_jar_script libexec/"igvtools.jar", "igvtools"
    pkgshare.install "genomes"
  end

  test do
    system bin/"igvtools"
  end
end
{'fraction_non_alphanumeric': 0.10763733809736489, 'fraction_numerical': 0.18713711478338543, 'mean_word_length': 5.005361930294906, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 12, 'https://': 6, 'lorem ipsum': 0, 'www.': 2, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4754942', 'n_tokens_mistral': 1186, 'n_tokens_neox': 956, 'n_words': 131}