<commit_before>---
layout: default
title: "Developer"
---

<div class="home">
    <h1 class="page-heading">Developer Documentation</h1>

    <ul>
        <li>Setup
            <ul>
                <li><a href="setup">Workstation setup guide</a></li>
                <li><a href="setup/galaxy">Galaxy setup guide</a></li>
            </ul>
        </li>
        <li><a href="tools">Tool Development</a>
            <ul>
                <li><a href="tools/pipelines">Pipeline Development</a>
                    <!-- Below still being written
                    <ul>
                        <li><a href="tools/pipelines/galaxy">Galaxy Tool Development</a></li>
                        <li><a href="tools/pipelines/workflow-description">IRIDA Workflow Description</a></li>
                    </ul>
                    -->
                </li>
                <!-- Below still being written
                <li><a href="tools/external">External Tool Development</a></li>
                -->
            </ul>
        </li>
        <li>API
            <ul>
                <li><a href="apidocs/">JavaDoc</a></li>
                <li><a href="rest">REST API</a></li>
            </ul>
        </li>
        <li><a href="data-model">Data Model</a></li>
        <li><a href="doc">Documentation guidelines</a></li>
        <li>Miscellaneous documentation<commit_msg>Added TODO instead of commenting out sections<commit_after>---
layout: default
title: "Developer"
---

<div class="home">
    <h1 class="page-heading">Developer Documentation</h1>

    <ul>
        <li>Setup
            <ul>
                <li><a href="setup">Workstation setup guide</a></li>
                <li><a href="setup/galaxy">Galaxy setup guide</a></li>
            </ul>
        </li>
        <li><a href="tools">Tool Development</a>
            <ul>
                <li><a href="tools/pipelines">Pipeline Development</a>
                    <ul>
                        <li>TODO: <a href="tools/pipelines/galaxy">Galaxy Tool Development</a></li>
                        <li>TODO: <a href="tools/pipelines/workflow-description">IRIDA Workflow Description</a></li>
                    </ul>
                </li>
                <li>TODO: <a href="tools/external">External Tool Development</a></li>
            </ul>
        </li>
        <li>API
            <ul>
                <li><a href="apidocs/">JavaDoc</a></li>
                <li><a href="rest">REST API</a></li>
            </ul>
        </li>
        <li><a href="data-model">Data Model</a></li>
        <li><a href="doc">Documentation guidelines</a></li>
        <li>Miscellaneous documentation
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