<commit_before><% content_for :javascripts do %>
  <%= javascript_pack_tag 'pancore' %>
<% end %>

<h1>Peptidome Analysis</h1>
<p>The (tryptic) peptidome is the complete set of (tryptic) peptides encoded in the proteome of an organism. Unipept provides fast and flexible analysis tools for identifying the unique peptidome of a given taxon and peptidome-based clustering.</p>
<div class='card card-nav'>
  <div class='card-title card-title-colored'>
    <ul id="tabs" class="nav nav-tabs visualisations">
      <li class="<%= @tab == "peptidefinder" ? "active" : ""%>"><a href="#pancore_graph_wrapper" id="unique-peptide-finder-tab" data-toggle="tab">Unique Peptide Finder <span class="small glyphicon glyphicon-question-sign help btn-icon"></span></a></li>
      <li class="<%= @tab == "peptidomeclustering" ? "active" : ""%> peptidome-clustering-tab"><a href="#sim_matrix_wrapper" data-toggle="tab">Peptidome Clustering <span class="small glyphicon glyphicon-question-sign help btn-icon"></span></a></li>
    </ul>
  </div>
  <div class='card-supporting-text'>
    <div id="buttons-pancore" class='buttons-single'></div>
    <div class="tab-content full-screen-container pancore not-full-screen">
      <div class="full-screen-bar">
        <div class="action-button"><button class='btn btn-primary add-proteomes' data-toggle="button"><span class="glyphicon glyphicon-plus"></span> Add proteomes</button></div>
        <nav class="fullScreenNav">
          <ul class="visualisations">
            <li class="active"><a href="#pancore_graph_wrapper" data-toggle="tab">Unique peptide finder</a></li>
            <li><a href="#sim_matrix_wrapper" data-toggle="tab" class="peptidome-clustering-tab">Peptidome clustering</a></li>
          </ul>
        </nav>
        <div class="fullScreenActions">
          <a title="" class="btn-animate download" data-original-title="Download the current view as an svg or png image"><span class="glyphicon glyphicon-download down"></span></a>
          <a title="" class="btn-animate exit" data-original-title="Exit full screen mode"><span class="glyphicon glyphicon-resize-small shrink"></span></a>
        </div>
      </div>
      <div class="tab-pane fade <%= @tab == "peptidefinder" ? "in active" : ""%>" id="pancore_graph_wrapper">
        <div id="pancore_graph"><commit_msg>Add warning banner to peptidome analysis<commit_after><% content_for :javascripts do %>
  <%= javascript_pack_tag 'pancore' %>
<% end %>

<div class="alert alert-warning" role="alert">
  <strong>Notice: </strong> the peptidome analysis has been a part of Unipept for several years now. Recently, changes in most modern browsers require us to rework most of this peptidome clustering application. This is, unfortunately, not feasible for us at the moment and lead us
  to the decision of ending support for the Unipept peptidome analysis soon. Please <a href="mailto:<EMAIL>" class="alert-link">contact us</a> in case you have any concerns or questions regarding this statement.
</div>

<h1>Peptidome Analysis</h1>
<p>The (tryptic) peptidome is the complete set of (tryptic) peptides encoded in the proteome of an organism. Unipept provides fast and flexible analysis tools for identifying the unique peptidome of a given taxon and peptidome-based clustering.</p>
<div class='card card-nav'>
  <div class='card-title card-title-colored'>
    <ul id="tabs" class="nav nav-tabs visualisations">
      <li class="<%= @tab == "peptidefinder" ? "active" : ""%>"><a href="#pancore_graph_wrapper" id="unique-peptide-finder-tab" data-toggle="tab">Unique Peptide Finder <span class="small glyphicon glyphicon-question-sign help btn-icon"></span></a></li>
      <li class="<%= @tab == "peptidomeclustering" ? "active" : ""%> peptidome-clustering-tab"><a href="#sim_matrix_wrapper" data-toggle="tab">Peptidome Clustering <span class="small glyphicon glyphicon-question-sign help btn-icon"></span></a></li>
    </ul>
  </div>
  <div class='card-supporting-text'>
    <div id="buttons-pancore" class='buttons-single'></div>
    <div class="tab-content full-screen-container pancore not-full-screen">
      <div class="full-screen-bar">
        <div class="action-button"><button class='btn btn-primary add-proteomes' data-toggle="button"><span class="glyphicon glyphicon-plus"></span> Add proteomes</button></div>
        <nav class="fullScreenNav">
          <ul class="visualisations">
            <li class="active"><a href="#pancore_graph_wrapper" data-toggle="tab">Unique peptide finder</a></li>
            <li><a href="#sim_matrix_wrapper" data-toggle="tab" class="peptidome-clustering-tab">Peptidome clustering</a></li>
          </ul>
        </nav>
        <div class="fullScreenActions">
          <a title="" class="btn-animate download" data-original-title="Download the current view as an svg or png image"><span class="glyphicon glyphicon-download down"></span></a>
          <a title="" class="btn-animate exit" data-original-title="Exit full screen mode"><span class="glyphicon glyphicon-resize-small shrink"></span></a>
        </div>
      </div>
      <div class="tab-pane fade <%= @tab == "peptidefinder" ? "in active" : ""%>" id="pancore_graph_wrapper">
        <div id="pancore_graph">
{'fraction_non_alphanumeric': 0.15806637253021294, 'fraction_numerical': 0.0007673124880107424, 'mean_word_length': 4.436913451511992, 'pattern_counts': {'":': 0, '<': 136, '<?xml version=': 0, '>': 136, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 6, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5269007', 'n_tokens_mistral': 1668, 'n_tokens_neox': 1553, 'n_words': 423}