<commit_before>Welcome to BioAWS
=================

This repository serves to hold code for running basic biological tools on Amazon Web Services Hadoop clusters.

Tools pipelined:
---------------

* [PhyML](atgc.lirmm.fr/phyml/)
    "PhyML is a phylogeny software based on the maximum-likelihood principle"
    
* [MP-EST](http://www.stat.osu.edu/~liuliang/research/mpest.html)
    "The MPEST method estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function"

Tools to pipeline:
-----------------

* [Lastz](http://www.bx.psu.edu/miller_lab/dist/README.lastz-1.01.50/README.lastz-1.01.50.html#intro)
    Sequence alignment program.  Genome scale alignments.
    <commit_msg>minor changes to README<commit_after>Welcome to BioAWS
=================

This repository serves to hold code for running basic biological tools on Amazon Web Services Hadoop clusters.

You can find instructions in the [wiki](https://github.com/ngcrawford/BioAWS/wiki/Instructions)

Tools pipelined:
---------------

* [PhyML](atgc.lirmm.fr/phyml/)
    "PhyML is a phylogeny software based on the maximum-likelihood principle"
    
* [MP-EST](http://www.stat.osu.edu/~liuliang/research/mpest.html)
    "The MPEST method estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function"

Tools to pipeline:
-----------------

* [Lastz](http://www.bx.psu.edu/miller_lab/dist/README.lastz-1.01.50/README.lastz-1.01.50.html#intro)
    Sequence alignment program.  Genome scale alignments.
    
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