<commit_before>/*
 * MLLogger.java
 *
 * Copyright (c) 2002-2015 <NAME>, <NAME> and <NAME>
 *
 * This file is part of BEAST.
 * See the NOTICE file distributed with this work for additional
 * information regarding copyright ownership and licensing.
 *
 * BEAST is free software; you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License as
 * published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 *  BEAST is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with BEAST; if not, write to the
 * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
 * Boston, MA  02110-1301  USA
 */

package dr.inference.loggers;

import dr.inference.model.Likelihood;

/**
 * A logger that stores maximum likelihood states.
 *
 * @author <NAME>
 * @author <NAME>
 * @version $Id: MLLogger.java,v 1.21 2005/07/27 22:09:21 rambaut Exp $
 */
public class MLLogger extends MCLogger {

    private final Likelihood likelihood;
    private double bestLikelihood;
    private long bestState;
    private String[] bestValues = null;
    private int logEvery = 0;

    public MLLogger(Likelihood likelihood, LogFormatter formatter, int logEvery) {

        super(formatter, logEvery, false);

        this.likelihood = likelihood;
    }
<commit_msg>Implementing #876 - 'logEvery' is not likely to need a long but to be consistent as it is a 'state count' variable. Also switching the logging of the time/state to switch to billions if only one sig fig would be shown for millions.<commit_after>/*
 * MLLogger.java
 *
 * Copyright (c) 2002-2015 <NAME>, <NAME> and <NAME>
 *
 * This file is part of BEAST.
 * See the NOTICE file distributed with this work for additional
 * information regarding copyright ownership and licensing.
 *
 * BEAST is free software; you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License as
 * published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 *  BEAST is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with BEAST; if not, write to the
 * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
 * Boston, MA  02110-1301  USA
 */

package dr.inference.loggers;

import dr.inference.model.Likelihood;

/**
 * A logger that stores maximum likelihood states.
 *
 * @author <NAME>
 * @author <NAME>
 * @version $Id: MLLogger.java,v 1.21 2005/07/27 22:09:21 rambaut Exp $
 */
public class MLLogger extends MCLogger {

    private final Likelihood likelihood;
    private double bestLikelihood;
    private long bestState;
    private String[] bestValues = null;
    private long logEvery = 0;

    public MLLogger(Likelihood likelihood, LogFormatter formatter, long logEvery) {

        super(formatter, logEvery, false);

        this.likelihood = likelihood;
    }

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