<commit_before>class MirPrefer < Formula
  homepage "https://github.com/hangelwen/miR-PREFeR"
  head "https://github.com/hangelwen/miR-PREFeR.git"
  url "https://github.com/hangelwen/miR-PREFeR/archive/v0.19.tar.gz"
  sha256 "e71baa5b8ed3db89e4bf15ecbe639ee2116dc7328d75b92e49829240f75c9daa"

  depends_on "samtools"
  depends_on "viennarna"

  def install
    prefix.install Dir["*"]
    bin.install_symlink "../miR_PREFeR.py"
  end

  test do
    system "python #{bin}/miR_PREFeR.py -h"
  end
end<commit_msg>mir-prefer: Add DOI and tag bioinformatics<commit_after>class MirPrefer < Formula
  homepage "https://github.com/hangelwen/miR-PREFeR"
  head "https://github.com/hangelwen/miR-PREFeR.git"
  url "https://github.com/hangelwen/miR-PREFeR/archive/v0.19.tar.gz"
  sha256 "e71baa5b8ed3db89e4bf15ecbe639ee2116dc7328d75b92e49829240f75c9daa"
  # doi "10.1093/bioinformatics/btu380"
  # tag "bioinformatics"

  depends_on "samtools"
  depends_on "viennarna"

  def install
    prefix.install Dir["*"]
    bin.install_symlink "../miR_PREFeR.py"
  end

  test do
    system "python #{bin}/miR_PREFeR.py -h"
  end
end
{'fraction_non_alphanumeric': 0.12477558348294435, 'fraction_numerical': 0.08348294434470377, 'mean_word_length': 4.162037037037037, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 3, 'https://': 6, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6108563', 'n_tokens_mistral': 529, 'n_tokens_neox': 461, 'n_words': 68}