<commit_before>####
#### AmiGO variables for installation.
####
---
AMIGO_CONFIGURED:
  value: 0
  comment: >
    This variable must be edited (to 1) before installing AmiGO.
  type: boolean
  
###
### Path and binary variables.
###

AMIGO_ROOT:
  value: ''
  comment: >
    Please enter the full path to the git repo amigo[/trunk] directory.
  type: directory
    
GO_YAML_LOCATION:
  value: ''
  comment: >
    Please enter the full path to the YAML config files directory. In that directory, all files like *config.yaml will be scanned for use.
  type: directory

GO_BBOPJS_LOCATION:
  comment: >
    If this is not redefined to a new location (e.g. the BBOP-JS staging/ directory, it will use the bbop.js bundle packaged with AmiGO 2 (the one used in the unit tests) in the _data/ directory.
  type: directory
  value: ./_data

# - NAME: AMIGO_DOT_PATH
#   value: /usr/bin/dot
#   comment: "Please enter the full path for the \"dot\" command"
#   type: executable

###
### AmiGO mapping variables.
###

AMIGO_PROJECT_NAME:
  value: amigo2
  comment: Please enter the name of this AmiGO installation.
  type: string
    
AMIGO_HTDOCS_PARTIAL_PATH:
  value: /srv/www/htdocs
  comment: Please enter the full path to a usable static document directory.
  type: directory

AMIGO_HTDOCS_PARTIAL_URL:
  value: http://localhost
  comment: Please enter the URL that this path maps to.
  type: url

AMIGO_CGI_PARTIAL_PATH:
  value: /srv/www/cgi-bin
  comment: Please enter the full path to a usable CGI enabled directory.
  type: directory

AMIGO_CGI_PARTIAL_URL:
  value: http://localhost/cgi-bin
  comment: Please enter the URL that this path maps to.
  type: url

AMIGO_PUBLIC_CGI_PARTIAL_URL:
  value: http://amigo.geneontology.org/cgi-bin
  comment: Please enter the partial public URL.
  type: true

AMIGO_PUBLIC_GOLR_URL:
  value: http://localhost:8080/solr/
  comment: Please enter the public URL of the GOlr server.
  type: url

###<commit_msg>changed initial values to allow for a known remote galaxy server<commit_after>####
#### AmiGO variables for installation.
####
---
AMIGO_CONFIGURED:
  value: 0
  comment: >
    This variable must be edited (to 1) before installing AmiGO.
  type: boolean
  
###
### Path and binary variables.
###

AMIGO_ROOT:
  value: ''
  comment: >
    Please enter the full path to the git repo amigo[/trunk] directory.
  type: directory
    
GO_YAML_LOCATION:
  value: ''
  comment: >
    Please enter the full path to the YAML config files directory. In that directory, all files like *config.yaml will be scanned for use.
  type: directory

GO_BBOPJS_LOCATION:
  comment: >
    If this is not redefined to a new location (e.g. the BBOP-JS staging/ directory, it will use the bbop.js bundle packaged with AmiGO 2 (the one used in the unit tests) in the _data/ directory.
  type: directory
  value: ./_data

# - NAME: AMIGO_DOT_PATH
#   value: /usr/bin/dot
#   comment: "Please enter the full path for the \"dot\" command"
#   type: executable

###
### AmiGO mapping variables.
###

AMIGO_PROJECT_NAME:
  value: amigo2
  comment: Please enter the name of this AmiGO installation.
  type: string
    
AMIGO_HTDOCS_PARTIAL_PATH:
  value: /srv/www/htdocs
  comment: Please enter the full path to a usable static document directory.
  type: directory

AMIGO_HTDOCS_PARTIAL_URL:
  value: http://localhost
  comment: Please enter the URL that this path maps to.
  type: url

AMIGO_CGI_PARTIAL_PATH:
  value: /srv/www/cgi-bin
  comment: Please enter the full path to a usable CGI enabled directory.
  type: directory

AMIGO_CGI_PARTIAL_URL:
  value: http://localhost/cgi-bin
  comment: Please enter the URL that this path maps to.
  type: url

AMIGO_PUBLIC_CGI_PARTIAL_URL:
  value: http://amigo.geneontology.org/cgi-bin
  comment: Please enter the partial public URL.
  type: true

AMIGO_PUBLIC_GOLR_URL:
  value: http://localhost:8080/solr/
  comment: Please enter the public URL of the GOlr server.
  type: url

AMIGO_PUBLIC_GALAXY_URL:
  value: http://galaxy.berkeleybop.org/
  comment: Please enter the public URL of the Galaxy server.
  type: url

###
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