<commit_before>---
assembly: hg19
build_author: ec2-user
build_date: 2018-02-26T22:21:00
chromosomes:
- chr1
- chr2
- chr3
- chr4
- chr5
- chr6
- chr7
- chr8
- chr9
- chr10
- chr11
- chr12
- chr13
- chr14
- chr15
- chr16
- chr17
- chr18
- chr19
- chr20
- chr21
- chr22
- chrM
- chrX
- chrY
database_dir: ~
files_dir: ~
fileProcessors:
  snp:
    args: --emptyField ! --minGq .95
    program: bystro-snp
  vcf:
    args: --emptyField ! --keepId --keepPos
    program: bystro-vcf
statistics:
  dbSNPnameField: dbSNP.name
  exonicAlleleFunctionField: refSeq.exonicAlleleFunction
  outputExtensions:
    json: .statistics.json
    qc: .statistics.qc.tsv
    tab: .statistics.tsv
  programPath: bystro-stats
  refTrackField: ref
  siteTypeField: refSeq.siteType
temp_dir: ~
tracks:
- build_author: ec2-user<commit_msg>Update hg19.clean.yml<commit_after>---
assembly: hg19
build_author: ec2-user
build_date: 2018-02-26T22:21:00
chromosomes:
- chr1
- chr2
- chr3
- chr4
- chr5
- chr6
- chr7
- chr8
- chr9
- chr10
- chr11
- chr12
- chr13
- chr14
- chr15
- chr16
- chr17
- chr18
- chr19
- chr20
- chr21
- chr22
- chrM
- chrX
- chrY
database_dir: ~
files_dir: ~
fileProcessors:
  snp:
    args: --emptyField ! --minGq .95
    program: bystro-snp
  vcf:
    args: --emptyField ! --sample %sampleList%
    program: bystro-vcf
statistics:
  dbSNPnameField: dbSNP.name
  exonicAlleleFunctionField: refSeq.exonicAlleleFunction
  outputExtensions:
    json: .statistics.json
    qc: .statistics.qc.tsv
    tab: .statistics.tsv
  programPath: bystro-stats
  refTrackField: ref
  siteTypeField: refSeq.siteType
temp_dir: ~
tracks:
- build_author: ec2-user
{'fraction_non_alphanumeric': 0.1148442272449603, 'fraction_numerical': 0.06841783750763591, 'mean_word_length': 3.014705882352941, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1419055', 'n_tokens_mistral': 744, 'n_tokens_neox': 673, 'n_words': 144}