<commit_before>.. singlet documentation master file, created by
   sphinx-quickstart on Tue Aug  8 11:15:11 2017.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

.. image:: _static/logo.png
   :width: 150
   :alt: t-SNE example

singlet
=======
Single cell RNA-Seq analysis.

Requirements
------------
Python 3.4+ is required. Moreover, you will need:

- pyyaml
- numpy
- scipy
- pandas
- xarray
- scikit-learn
- matplotlib
- seaborn
- bhtsne (for t-SNE dimensionality reduction)

Get those from pip or conda.

Install
-------<commit_msg>Mention phenotypes on docs index<commit_after>.. singlet documentation master file, created by
   sphinx-quickstart on Tue Aug  8 11:15:11 2017.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

.. image:: _static/logo.png
   :width: 150
   :alt: t-SNE example

singlet
=======
Single cell RNA-Seq analysis with phenotypes.

Requirements
------------
Python 3.4+ is required. Moreover, you will need:

- pyyaml
- numpy
- scipy
- pandas
- xarray
- scikit-learn
- matplotlib
- seaborn
- bhtsne (for t-SNE dimensionality reduction)

Get those from pip or conda.

Install
-------
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