<commit_before>name: cowbat
channels:
- biobuilds
- dranew
- adamkoziol
- conda-forge
- defaults
- r
- bioconda
- anaconda
dependencies:
- fastx-toolkit=0.0.14=pl5.22.0_2
- bbmap=37.78=0
- blast=2.2.31=1
- bowtie2=2.3.4=py35pl5.22.0_0
- fastqc=0.11.6=pl5.22.0_0
- libgtextutils=0.7=3
- mash=1.1=0
- perl-gd=2.56=pl5.22.0_6
- perl-gdgraph=1.49=pl5.22.0_3
- perl-gdtextutil=0.86=pl5.22.0_3
- perl-perlio-gzip=0.19=pl5.22.0_1
- qualimap=2.2.2a=1
- samtools=1.6=0
- seqtk=1.2=0
- spades=3.11.1=py35_zlib1.2.8_0
- anaconda-client=1.6.5=py_0
- asn1crypto=0.22.0=py35_0
- blas=1.1=openblas
- boost=1.65.1=py35_0
- boost-cpp=1.65.1=0
- bzip2=1.0.6=1
- ca-certificates=2017.11.5=0
- cairo=1.14.6=4
- capnproto=0.5.3=0
- certifi=2017.11.5=py35_0
- cffi=1.11.2=py35_0
- chardet=3.0.4=py35_0
- clyent=1.2.2=py35_0
- cryptography=2.1.4=py35_0
- curl=7.54.1=0
- cython=0.27.3=py35_0
- dbus=1.10.22=0
- decorator=4.1.2=py35_0
- expat=2.2.5=0
- fontconfig=2.12.1=6
- freetype=2.7=1
- gettext=0.19.7=1
- giflib=5.1.4=0
- glib=2.51.4=0
- gmp=6.1.2=0
- gnuplot=5.2.0=0
- gnutls=3.5.15=0
- graphite2=1.3.10=0
- gsl=2.2.1=blas_openblas_4
- gst-plugins-base=1.8.0=0
- gstreamer=1.8.0=2
- harfbuzz=1.4.3=0
- icu=58.2=0
- idna=2.6=py35_1
- ipython_genutils=0.2.0=py35_0
- jpeg=9b=2
- jsonschema=2.6.0=py35_0
- jupyter_core=4.4.0=py_0
- krb5=1.14.2=0
- libffi=3.2.1=3
- libgd=2.2.5=0
- libiconv=1.15=0
- libidn11=1.33=0
- libpng=1.6.28=1
- libssh2=1.8.0=1
- libtiff=4.0.7=0
- libwebp=0.5.2=7
- libxcb=1.12=1
- libxml2=2.9.5=0
- nbformat=4.4.0=py35_0
- ncurses=5.9=10
- nettle=3.3=0
- numpy=1.14.0=py35_blas_openblas_200
- openblas=0.2.20=7
- openjdk=8.0.144=zulu8.23.0.3_1
- openssl=1.0.2n=0
- pango=1.40.4=0
- pcre=8.39=0
- perl=5.22.0.1=0
- pip=9.0.1=py35_1
- pixman=0.34.0=1
- psutil=5.4.0=py35_0
- pycparser=2.18=py35_0
- pyopenssl=17.4.0=py35_0
- pysocks=1.6.8=py35_1
- python=3.5.4=0
- python-dateutil=2.6.1=py35_0
- pytz=2017.3=py_2
- pyyaml=3.12=py35_1
- qt=5.6.2=3
- readline=6.2=0
- requests=2.18.4=py35_1
- setuptools=38.4.0=py35_0
- six=1.11.0=py35_1
- sqlite=3.13.0=1
- tbb=2018_20171205=0
- tk=8.5.19=2
- traitlets=4.3.2=py35_0
- urllib3=1.22=py35_0
- wheel=0.30.0=py35_2
- xorg-libxau=1.0.8=3
- xorg-libxdmcp=1.1.2=3
- xz=5.2.3=0
- yaml=0.1.6=0
- zlib=1.2.8=3
- intel-openmp=2018.0.0=hc7b2577_8
- libgcc=4.8.5=2
- libgcc-ng=7.2.0=h7cc24e2_2
- libgfortran=3.0.0=1
- libstdcxx-ng=7.2.0=h7a57d05_2
- mkl=2018.0.1=h19d6760_4
- bcl2fastq=2.19.0=1
- boost_lib=1.54.0=1
- pip:
  - attrs==17.3.0
  - biopython==1.70
  - ipython-genutils==0.2.0
  - jupyter-core==4.4.0
  - olctools==0.3.31
  - pluggy==0.6.0
  - py==1.5.2
  - pysam==0.13
  - pytest==3.3.1
  - sipprverse==0.0.30
  - xlsxwriter==1.0.2
prefix: /home/adamkoziol/miniconda3/envs/cowbat

<commit_msg>Updates to environment.yml<commit_after>name: cowbat
channels:
- dranew
- biobuilds
- adamkoziol
- conda-forge
- defaults
- r
- bioconda
- anaconda
dependencies:
- fastx-toolkit=0.0.14=pl5.22.0_2
- bbmap=37.78=0
- blast=2.2.31=1
- bowtie2=2.3.4=py35pl5.22.0_0
- fastqc=0.11.6=pl5.22.0_0
- libgtextutils=0.7=3
- mash=1.1=0
- perl-gd=2.56=pl5.22.0_6
- perl-gdgraph=1.49=pl5.22.0_3
- perl-gdtextutil=0.86=pl5.22.0_3
- perl-perlio-gzip=0.19=pl5.22.0_1
- qualimap=2.2.2a=1
- samtools=1.6=0
- seqtk=1.2=0
- spades=3.11.1=py35_zlib1.2.8_0
- anaconda-client=1.6.5=py_0
- asn1crypto=0.22.0=py35_0
- blas=1.1=openblas
- boost=1.65.1=py35_0
- boost-cpp=1.65.1=0
- bzip2=1.0.6=1
- ca-certificates=2017.11.5=0
- cairo=1.14.6=4
- capnproto=0.5.3=0
- certifi=2017.11.5=py35_0
- cffi=1.11.2=py35_0
- chardet=3.0.4=py35_0
- click=6.7=py_1
- clyent=1.2.2=py35_0
- cryptography=2.1.4=py35_0
- curl=7.52.1=0
- cython=0.27.3=py35_0
- dbus=1.10.22=0
- decorator=4.1.2=py35_0
- expat=2.2.5=0
- fontconfig=2.12.1=6
- freetype=2.7=1
- gettext=0.19.7=1
- giflib=5.1.4=0
- glib=2.51.4=0
- gmp=6.1.2=0
- gnuplot=5.2.0=0
- gnutls=3.5.15=0
- graphite2=1.3.10=0
- gsl=2.2.1=blas_openblas_4
- gst-plugins-base=1.8.0=0
- gstreamer=1.8.0=2
- harfbuzz=1.4.3=0
- icu=58.2=0
- idna=2.6=py35_1
- ipython_genutils=0.2.0=py35_0
- jpeg=9b=2
- jsonschema=2.6.0=py35_0
- jupyter_core=4.4.0=py_0
- krb5=1.14.2=0
- libffi=3.2.1=3
- libgd=2.2.5=0
- libiconv=1.15=0
- libidn11=1.33=0
- libpng=1.6.28=1
- libssh2=1.8.0=1
- libtiff=4.0.7=0
- libwebp=0.5.2=7
- libxcb=1.12=1
- libxml2=2.9.5=0
- nbformat=4.4.0=py35_0
- ncurses=5.9=10
- nettle=3.3=0
- numpy=1.14.0=py35_blas_openblas_200
- openblas=0.2.20=7
- openssl=1.0.2n=0
- pandas=0.22.0=py35_0
- pango=1.40.4=0
- pcre=8.39=0
- perl=5.22.0.1=0
- pip=9.0.1=py35_1
- pixman=0.34.0=1
- psutil=5.4.0=py35_0
- pycparser=2.18=py35_0
- pyopenssl=17.4.0=py35_0
- pysocks=1.6.8=py35_1
- python=3.5.4=0
- python-dateutil=2.6.1=py35_0
- pytz=2017.3=py_2
- pyyaml=3.12=py35_1
- qt=5.6.2=3
- readline=6.2=0
- requests=2.18.4=py35_1
- setuptools=38.4.0=py35_0
- six=1.11.0=py35_1
- sqlite=3.13.0=1
- tbb=2018_20171205=0
- tk=8.5.19=2
- traitlets=4.3.2=py35_0
- urllib3=1.22=py35_0
- wheel=0.30.0=py35_2
- xorg-libxau=1.0.8=3
- xorg-libxdmcp=1.1.2=3
- xz=5.2.3=0
- yaml=0.1.6=0
- zlib=1.2.8=3
- intel-openmp=2018.0.0=hc7b2577_8
- libgcc=4.8.5=2
- libgcc-ng=7.2.0=h7cc24e2_2
- libgfortran=3.0.0=1
- libstdcxx-ng=7.2.0=h7a57d05_2
- mkl=2018.0.1=h19d6760_4
- openjdk=8.0.121=1
- pycurl=7.43.0=py35_2
- bcl2fastq=2.19.0=1
- boost_lib=1.54.0=1
- pip:
  - attrs==17.3.0
  - biopython==1.70
  - ipython-genutils==0.2.0
  - jupyter-core==4.4.0
  - olctools==0.3.31
  - pluggy==0.6.0
  - py==1.5.2
  - pysam==0.13
  - pytest==3.3.1
  - sipprverse==0.0.30
  - xlsxwriter==1.0.2
prefix: /home/adamkoziol/miniconda3/envs/cowbat


{'fraction_non_alphanumeric': 0.22814921607496846, 'fraction_numerical': 0.23535772211209227, 'mean_word_length': 3.1202672605790647, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 3, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5474131', 'n_tokens_mistral': 3836, 'n_tokens_neox': 3546, 'n_words': 273}