<commit_before>(ns gointermod.db)

(def default-db
  {:selected-organism :human
   :are-all-orthologs-selected? true
   :active-view :ortholog-summary
   :active-filter "biological_process"
   :max-p 0.05
   :test-correction "Holm-Bonferroni"
   :filters
     {"biological_process"
       {:pretty-name "Biological Process"
        :icon "#icon-biological-process"}
      "molecular_function"
       {:pretty-name "Molecular Function"
        :icon "#icon-molecular-function"}
      "cellular_component"
       {:pretty-name "Cellular Component"
        :icon "#icon-cellular-component"}
    }
   :organisms
   {:human
     {:id     :human
       :common "Human"
       :output? true
       :abbrev "H. sapiens"
       :status {:status :na}
       :mine
       {:name "HumanMine"
       :url "www.humanmine.org/humanmine"
       :service {:root "www.humanmine.org/humanmine"}}}
      ;  :url "beta.humanmine.org/beta"
      ;  :service {:root "beta.humanmine.org/beta"}}}
    :fly
     {:id     :fly
      :common "Fly"
      :status {:status :na}
      :output? true
      :abbrev "D. melanogaster"
      :mine
       {:name "FlyMine"
      ;  :url "beta.flymine.org/beta"
      ;  :service {:root "beta.flymine.org/beta"}}}
       :url "www.flymine.org/flymine"
       :service {:root "www.flymine.org/flymine"}}}
    :mouse
     {:id     :mouse
      :common "Mouse"
      :output? true
      :abbrev "M. musculus"
      :status {:status :na}
      :mine
       {:name "MouseMine"
        :url "www.mousemine.org/mousemine"
        :service {:root "www.mousemine.org/mousemine"}}}
      ; :url "beta.mousemine.org/mousemine"
      ; :service {:root "beta.mousemine.org/mousemine"}}}
    :rat
     {:id     :rat
      :common "Rat"
      :output? true
      :abbrev "R. norvegicus"
      :status {:status :na}
      :mine
       {:name "RatMine"
      ; :url "dev.ratmine.mcw.edu/ratmine"
      ; :service {:root "dev.ratmine.mcw.edu/ratmine"}}}
        :url "ratmine.mcw.edu/ratmine"
        :service {:root "stearman.hmgc.mcw.edu/ratmine"}}}
    :zebrafish
     {:id     :zebrafish
      :common "Zebrafish"
      :output? true
      :status {:status :na}
      :abbrev "D. rerio"
      :mine
       {:name "ZebraFishMine"
        :url "www.zebrafishmine.org"
        :service {:root "www.zebrafishmine.org"}}}
    :worm
     {:id     :worm
      :common "Worm"
      :output? true
      :abbrev "C. elegans"
      :status {:status :na}
      :mine
       {:name "WormMine"
  ;     :url "im-251.wormbase.org/tools/wormmine"
  ;     :service {:root "im-251.wormbase.org/tools/wormmine"}}}
       :url "intermine.wormbase.org/tools/wormmine"
       :service {:root "intermine.wormbase.org/tools/wormmine"}}}
    :yeast
     {:id     :yeast
      :output? true<commit_msg>point to newest worm mine<commit_after>(ns gointermod.db)

(def default-db
  {:selected-organism :human
   :are-all-orthologs-selected? true
   :active-view :ortholog-summary
   :active-filter "biological_process"
   :max-p 0.05
   :test-correction "Holm-Bonferroni"
   :filters
     {"biological_process"
       {:pretty-name "Biological Process"
        :icon "#icon-biological-process"}
      "molecular_function"
       {:pretty-name "Molecular Function"
        :icon "#icon-molecular-function"}
      "cellular_component"
       {:pretty-name "Cellular Component"
        :icon "#icon-cellular-component"}
    }
   :organisms
   {:human
     {:id     :human
       :common "Human"
       :output? true
       :abbrev "H. sapiens"
       :status {:status :na}
       :mine
       {:name "HumanMine"
       :url "www.humanmine.org/humanmine"
       :service {:root "www.humanmine.org/humanmine"}}}
      ;  :url "beta.humanmine.org/beta"
      ;  :service {:root "beta.humanmine.org/beta"}}}
    :fly
     {:id     :fly
      :common "Fly"
      :status {:status :na}
      :output? true
      :abbrev "D. melanogaster"
      :mine
       {:name "FlyMine"
      ;  :url "beta.flymine.org/beta"
      ;  :service {:root "beta.flymine.org/beta"}}}
       :url "www.flymine.org/flymine"
       :service {:root "www.flymine.org/flymine"}}}
    :mouse
     {:id     :mouse
      :common "Mouse"
      :output? true
      :abbrev "M. musculus"
      :status {:status :na}
      :mine
       {:name "MouseMine"
        :url "www.mousemine.org/mousemine"
        :service {:root "www.mousemine.org/mousemine"}}}
      ; :url "beta.mousemine.org/mousemine"
      ; :service {:root "beta.mousemine.org/mousemine"}}}
    :rat
     {:id     :rat
      :common "Rat"
      :output? true
      :abbrev "R. norvegicus"
      :status {:status :na}
      :mine
       {:name "RatMine"
      ; :url "dev.ratmine.mcw.edu/ratmine"
      ; :service {:root "dev.ratmine.mcw.edu/ratmine"}}}
        :url "ratmine.mcw.edu/ratmine"
        :service {:root "stearman.hmgc.mcw.edu/ratmine"}}}
    :zebrafish
     {:id     :zebrafish
      :common "Zebrafish"
      :output? true
      :status {:status :na}
      :abbrev "D. rerio"
      :mine
       {:name "ZebraFishMine"
        :url "www.zebrafishmine.org"
        :service {:root "www.zebrafishmine.org"}}}
    :worm
     {:id     :worm
      :common "Worm"
      :output? true
      :abbrev "C. elegans"
      :status {:status :na}
      :mine
       {:name "WormMine"
       :url "im-253.wormbase.org/tools/wormmine"
       :service {:root "im-253.wormbase.org/tools/wormmine"}}}
  ;     :url "intermine.wormbase.org/tools/wormmine"
  ;     :service {:root "intermine.wormbase.org/tools/wormmine"}}}
    :yeast
     {:id     :yeast
      :output? true
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