<commit_before>package ca.corefacility.bioinformatics.irida.model.irida;

import java.util.Set;

import ca.corefacility.bioinformatics.irida.model.sequenceFile.SequenceFile;

/**
 * Interface describing a pair object storing forward and reverse
 * {@link SequenceFile}s
 */
public interface IridaSequenceFilePair {

	/**
	 * Get the pair's identifier
	 * 
	 * @return Long id
	 */
	public Long getId();

	/**
	 * Get the forward orientied {@link SequenceFile}
	 * 
	 * @return Forward {@link SequenceFile}
	 */
	public SequenceFile getForwardSequenceFile();

	/**
	 * Get the reverse oriented {@link SequenceFile}
	 * 
	 * @return reverse {@link SequenceFile}
	 */
	public SequenceFile getReverseSequenceFile();

	/**
	 * Get a Set of the {@link SequenceFile}s for this pair
	 * 
	 * @return Set of {@link SequenceFile}s
	 */
	public Set<SequenceFile> getFiles();
}<commit_msg>updated pair interface to refer to interface sequencefile<commit_after>package ca.corefacility.bioinformatics.irida.model.irida;

import java.util.Set;

import ca.corefacility.bioinformatics.irida.model.sequenceFile.SequenceFile;

/**
 * Interface describing a pair object storing forward and reverse
 * {@link SequenceFile}s
 */
public interface IridaSequenceFilePair {

	/**
	 * Get the pair's identifier
	 * 
	 * @return Long id
	 */
	public Long getId();

	/**
	 * Get the forward orientied {@link SequenceFile}
	 * 
	 * @return Forward {@link SequenceFile}
	 */
	public IridaSequenceFile getForwardSequenceFile();

	/**
	 * Get the reverse oriented {@link SequenceFile}
	 * 
	 * @return reverse {@link SequenceFile}
	 */
	public IridaSequenceFile getReverseSequenceFile();

	/**
	 * Get a Set of the {@link SequenceFile}s for this pair
	 * 
	 * @return Set of {@link SequenceFile}s
	 */
	public Set<? extends IridaSequenceFile> getFiles();
}
{'fraction_non_alphanumeric': 0.11025781678551838, 'fraction_numerical': 0.0, 'mean_word_length': 4.038674033149171, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4268628', 'n_tokens_mistral': 588, 'n_tokens_neox': 502, 'n_words': 157}