<commit_before><?xml version="1.0"?>
<classes>
<class name="org.flymine.model.genomic.Translation" extends="org.flymine.model.genomic.BioEntity" is-interface="true"/>
<class name="org.flymine.model.genomic.Orthologue" extends="org.flymine.model.genomic.Relation" is-interface="true">
  <reference name="objectTranslation" referenced-type="org.flymine.model.genomic.Translation"/>
  <reference name="subjectTranslation" referenced-type="org.flymine.model.genomic.Translation"/>
</class>
<class name="org.flymine.model.genomic.Paralogue" extends="org.flymine.model.genomic.Relation" is-interface="true">
  <reference name="objectTranslation" referenced-type="org.flymine.model.genomic.Translation"/>
  <reference name="subjectTranslation" referenced-type="org.flymine.model.genomic.Translation"/>
</class>
<class name="org.flymine.model.genomic.Gene" is-interface="true">
  <collection name="orthologues" referenced-type="org.flymine.model.genomic.Orthologue" ordered="true"/>
</class>
</classes><commit_msg>added extra fields to orthologue for scores, in-paralogues and co-orthologues<commit_after><?xml version="1.0"?>
<classes>
<class name="org.flymine.model.genomic.Translation" extends="org.flymine.model.genomic.BioEntity" is-interface="true"/>
<class name="org.flymine.model.genomic.Orthologue" extends="org.flymine.model.genomic.Relation" is-interface="true">
  <attribute name="score" type="java.lang.Double"/>
  <attribute name="subjectBootstrapScore" type="java.lang.Integer"/>
  <attribute name="objectBootstrapScore" type="java.lang.Integer"/>
  <reference name="objectTranslation" referenced-type="org.flymine.model.genomic.Translation"/>
  <reference name="subjectTranslation" referenced-type="org.flymine.model.genomic.Translation"/>
  <collection name="coOrthologues" referenced-type="org.flymine.model.genomic.Orthologue" ordered="true"/>
  <collection name="inParalogues" referenced-type="org.flymine.model.genomic.Paralogue" ordered="true"/>
</class>
<class name="org.flymine.model.genomic.Paralogue" extends="org.flymine.model.genomic.Relation" is-interface="true">
  <reference name="objectTranslation" referenced-type="org.flymine.model.genomic.Translation"/>
  <reference name="subjectTranslation" referenced-type="org.flymine.model.genomic.Translation"/>
</class>
<class name="org.flymine.model.genomic.Gene" is-interface="true">
  <collection name="orthologues" referenced-type="org.flymine.model.genomic.Orthologue" ordered="true"/>
</class>
</classes>
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