<commit_before>#clone_repo:
cookiecutter https://github.com/EnvGen/cookiecutter-binning-project --no-input

cd binning-project

mkdir data

ln -s ../contigs data/
ln -s ../reads data/

snakemake --list-target-rules
snakemake --dryrun concoct_inputtable_10K_all<commit_msg>Fix broken links to data<commit_after>#clone_repo:
cookiecutter https://github.com/EnvGen/cookiecutter-binning-project --no-input

cd binning-project

mkdir data
cd data
ln -s ../../contigs .
ln -s ../../reads .
cd ..

snakemake --list-target-rules
snakemake --dryrun concoct_inputtable_10K_all
{'fraction_non_alphanumeric': 0.13074204946996468, 'fraction_numerical': 0.007067137809187279, 'mean_word_length': 3.805084745762712, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7673823', 'n_tokens_mistral': 216, 'n_tokens_neox': 203, 'n_words': 46}