<commit_before><?xml version="1.0"?>

<!-- ================================================================= -->
<!-- caTRIP Master docs build file                                     -->
<!-- ================================================================= -->
<project name="catrip-1.0-docs" default="test" basedir=".">

	<property name="docs.dir" location="${basedir}/docs"/>
	<property name="silverapi.dir" location="${docs.dir}/silver_api"/>

	<property name="cae.src.dir" location="${projects.dir}/cae_reengineering/1.2/src"/>
	<property name="catissuecore.src.dir" location="C:/caBIG/cacorecvs/caCORE Code Generation"/>
	<property name="tumorregistry.src.dir" location="${projects.dir}/tumor registry/src"/>
	<property name="cgems.src.dir" location="${projects.dir}/cgems-beans/src"/>

	<!-- =============================================================== -->
	<!-- Call test for each project and aggregates the log resutls       -->
	<!-- =============================================================== -->
	<target name="docs-silverapi" depends="" description="Generates API documentation.">
		<mkdir dir="${silverapi.dir}"/>
		<delete dir="${silverapi.dir}"/>
		<mkdir dir="${silverapi.dir}"/>
		<copy file="../documentation/images/logo/catrip_logo.jpg" todir="${silverapi.dir}" failonerror="false"/>
		<javadoc
			destdir="${silverapi.dir}"
			author="false"
			version="false"
			use="false"
			windowtitle="caTRIP Silver API Documentation"
			linksource="false"
			useexternalfile="true"
		>

			<!-- ============================= -->
			<!-- CAE                           -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/CAEDataServiceV2/src" defaultexcludes="yes">
				<include name="**/*Client.java"/>
			</fileset>
			<fileset dir="${projects.dir}/CAEDataServiceV2/build/stubs-CAE/src" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/bindings/*"/>
				<exclude name="**/service/*"/>
				<exclude name="**/stubs/**"/>
				<exclude name="**/metadata/**"/>
				<exclude name="**/*PortType.java"/>
				<exclude name="**/*ResourceProperties.java"/>
				<exclude name="**/*Request.java"/>
				<exclude name="**/*Response.java"/>
				<exclude name="**/DataService.types/*"/>
			</fileset>
			<fileset dir="${cae.src.dir}" defaultexcludes="yes">
				<include name="**/*.java"/>
			</fileset>

			<!-- ============================= -->
			<!-- caTissue CORE                 -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/CaTissueCoreDataServiceV2/src" defaultexcludes="yes">
				<include name="**/*Client.java"/>
			</fileset>
			<fileset dir="${projects.dir}/CaTissueCoreDataServiceV2/build/stubs-CaTissueCore/src" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/bindings/*"/>
				<exclude name="**/service/*"/>
				<exclude name="**/stubs/**"/>
				<exclude name="**/metadata/**"/>
				<exclude name="**/*PortType.java"/>
				<exclude name="**/*ResourceProperties.java"/>
				<exclude name="**/*Request.java"/>
				<exclude name="**/*Response.java"/>
				<exclude name="**/DataService.types/*"/>
			</fileset>
			<fileset dir="${catissuecore.src.dir}" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/ws/*"/>
				<exclude name="**/domainobject/*"/>
			</fileset>

			<!-- ============================= -->
			<!-- TumorRegistry                 -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/TumorRegistryDataService/src" defaultexcludes="yes">
				<include name="**/*Client.java"/>
			</fileset>
			<fileset dir="${projects.dir}/TumorRegistryDataService/build/stubs-CaTRIPTumorRegistry/src" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/bindings/*"/>
				<exclude name="**/service/*"/>
				<exclude name="**/stubs/**"/>
				<exclude name="**/metadata/**"/>
				<exclude name="**/*PortType.java"/>
				<exclude name="**/*ResourceProperties.java"/>
				<exclude name="**/*Request.java"/>
				<exclude name="**/*Response.java"/>
				<exclude name="**/DataService.types/*"/>
			</fileset>
			<fileset dir="${tumorregistry.src.dir}" defaultexcludes="yes">
				<include name="**/*.java"/>
			</fileset>

			<!-- ============================= -->
			<!-- CGEMS SNP                     -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/CGEMSDataServiceV2/src" defaultexcludes="yes">
				<include name="**/*Client.java"/>
			</fileset>
			<fileset dir="${projects.dir}/CGEMSDataServiceV2/build/stubs-CGEMS/src" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/bindings/*"/>
				<exclude name="**/service/*"/>
				<exclude name="**/stubs/**"/>
				<exclude name="**/metadata/**"/>
				<exclude name="**/*PortType.java"/>
				<exclude name="**/*ResourceProperties.java"/>
				<exclude name="**/*Request.java"/>
				<exclude name="**/*Response.java"/>
			</fileset>
			<fileset dir="${cgems.src.dir}" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/util/*"/>
				<exclude name="**/exceptions/*"/>
			</fileset>

			<!-- ============================= -->
			<!-- Distributed Query Engine      -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/queryengine/src/java" defaultexcludes="yes">
				<include name="gov/nih/nci/catrip/fqe/engine/FederatedQueryEngineImpl.java"/>
			</fileset>
			<fileset dir="${projects.dir}/data/build/src" defaultexcludes="yes">
				<include name="**/*.java"/>
			</fileset>

			<group title="Tumor Registry" packages="edu.duke.cabig.tumorregistry*:gov.nih.nci.cagrid.catriptumorregistry*"/>

			<group title="caIntegrator SNP" packages="gov.nih.nci.cagrid.cgems*:gov.nih.nci.caintegrator*"/>

			<group title="caTissue CORE" packages="gov.nih.nci.cagrid.catissuecore*:edu.wustl.catissuecore*"/>

			<group title="CAE" packages="edu.duke.catrip.cae*:gov.nih.nci.cagrid.cae*:edu.pitt.cabig.cae*"/>

			<group title="Distributed Query Engine" packages="gov.nih.nci.catrip.fqe*:gov.nih.nci.catrip.dcql*:gov.nih.nci.catrip.cqlquery*"/>

			<group title="caGrid Data Service" packages="gov.nih.nci.cagrid.cqlquery*:gov.nih.nci.cagrid.data*:gov.nih.nci.cagrid.cqlresultset:data.cagrid*"/>

			<doctitle><![CDATA[<h1>caTRIP Silver API Documentation</h1>]]></doctitle>
			<bottom><![CDATA[<i>Copyright &#169; 2006 Duke Comprehensive Cancer Center. All Rights Reserved.</i>]]></bottom>
			<header><![CDATA[<img src="catrip_logo.jpg" width="60" height="60"/>]]></header>
		</javadoc>
	</target>

</project><commit_msg>*** empty log message ***<commit_after><?xml version="1.0"?>

<!-- ================================================================= -->
<!-- caTRIP Master docs build file                                     -->
<!-- ================================================================= -->
<project name="catrip-1.0-docs" default="test" basedir=".">

	<property name="docs.dir" location="${basedir}/docs"/>
	<property name="silverapi.dir" location="${docs.dir}/silver_api_final"/>

	<property name="cae.src.dir" location="${projects.dir}/cae_reengineering/1.2/src"/>
	<property name="catissuecore.src.dir" location="${projects.dir}/catissuecore-beans/src"/>
	<property name="tumorregistry.src.dir" location="${projects.dir}/tumor registry/src"/>
	<property name="cgems.src.dir" location="${projects.dir}/cgems-beans/src"/>
	<property name="caties.src.dir" location="${projects.dir}/caties-beans/src"/>

	<!-- =============================================================== -->
	<!-- Call test for each project and aggregates the log resutls       -->
	<!-- =============================================================== -->
	<target name="docs-silverapi" depends="" description="Generates API documentation.">
		<mkdir dir="${silverapi.dir}"/>
		<delete dir="${silverapi.dir}"/>
		<mkdir dir="${silverapi.dir}"/>
		<copy file="../documentation/images/logo/catrip_logo.jpg" todir="${silverapi.dir}" failonerror="false"/>
		<javadoc
			destdir="${silverapi.dir}"
			author="false"
			version="false"
			use="false"
			windowtitle="caTRIP Silver API Documentation"
			linksource="false"
			useexternalfile="true"
		>

			<!-- ============================= -->
			<!-- CAE                           -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/CAEDataServiceV2/src" defaultexcludes="yes">
				<include name="**/*Client.java"/>
			</fileset>
			<fileset dir="${projects.dir}/CAEDataServiceV2/build/stubs-CAE/src" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/bindings/*"/>
				<exclude name="**/service/*"/>
				<exclude name="**/stubs/**"/>
				<exclude name="**/metadata/**"/>
				<exclude name="**/*PortType.java"/>
				<exclude name="**/*ResourceProperties.java"/>
				<exclude name="**/*Request.java"/>
				<exclude name="**/*Response.java"/>
				<exclude name="**/DataService.types/*"/>
			</fileset>
			<fileset dir="${cae.src.dir}" defaultexcludes="yes">
				<include name="**/*.java"/>
			</fileset>

			<!-- ============================= -->
			<!-- caTissue CORE                 -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/CaTissueCoreDataServiceV2/src" defaultexcludes="yes">
				<include name="**/*Client.java"/>
			</fileset>
			<fileset dir="${projects.dir}/CaTissueCoreDataServiceV2/build/stubs-CaTissueCore/src" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/bindings/*"/>
				<exclude name="**/service/*"/>
				<exclude name="**/stubs/**"/>
				<exclude name="**/metadata/**"/>
				<exclude name="**/*PortType.java"/>
				<exclude name="**/*ResourceProperties.java"/>
				<exclude name="**/*Request.java"/>
				<exclude name="**/*Response.java"/>
				<exclude name="**/DataService.types/*"/>
			</fileset>
			<fileset dir="${catissuecore.src.dir}" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/ws/*"/>
				<exclude name="**/domainobject/*"/>
			</fileset>

			<!-- ============================= -->
			<!-- TumorRegistry                 -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/TumorRegistryDataService/src" defaultexcludes="yes">
				<include name="**/*Client.java"/>
			</fileset>
			<fileset dir="${projects.dir}/TumorRegistryDataService/build/stubs-CaTRIPTumorRegistry/src" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/bindings/*"/>
				<exclude name="**/service/*"/>
				<exclude name="**/stubs/**"/>
				<exclude name="**/metadata/**"/>
				<exclude name="**/*PortType.java"/>
				<exclude name="**/*ResourceProperties.java"/>
				<exclude name="**/*Request.java"/>
				<exclude name="**/*Response.java"/>
				<exclude name="**/DataService.types/*"/>
			</fileset>
			<fileset dir="${tumorregistry.src.dir}" defaultexcludes="yes">
				<include name="**/*.java"/>
			</fileset>

			<!-- ============================= -->
			<!-- CGEMS SNP                     -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/CGEMSDataServiceV2/src" defaultexcludes="yes">
				<include name="**/*Client.java"/>
			</fileset>
			<fileset dir="${projects.dir}/CGEMSDataServiceV2/build/stubs-CGEMS/src" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/bindings/*"/>
				<exclude name="**/service/*"/>
				<exclude name="**/stubs/**"/>
				<exclude name="**/metadata/**"/>
				<exclude name="**/*PortType.java"/>
				<exclude name="**/*ResourceProperties.java"/>
				<exclude name="**/*Request.java"/>
				<exclude name="**/*Response.java"/>
			</fileset>
			<fileset dir="${cgems.src.dir}" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/util/*"/>
				<exclude name="**/exceptions/*"/>
			</fileset>

			<!-- ============================= -->
			<!-- caTIES	                     -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/caTIESDataService/src" defaultexcludes="yes">
				<include name="**/*Client.java"/>
			</fileset>
			<fileset dir="${projects.dir}/CGEMSDataServiceV2/build/stubs-CGEMS/src" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/bindings/*"/>
				<exclude name="**/service/*"/>
				<exclude name="**/stubs/**"/>
				<exclude name="**/metadata/**"/>
				<exclude name="**/*PortType.java"/>
				<exclude name="**/*ResourceProperties.java"/>
				<exclude name="**/*Request.java"/>
				<exclude name="**/*Response.java"/>
			</fileset>
			<fileset dir="${caties.src.dir}" defaultexcludes="yes">
				<include name="**/*.java"/>
				<exclude name="**/util/*"/>
				<exclude name="**/exceptions/*"/>
			</fileset>

			<!-- ============================= -->
			<!-- Distributed Query Engine      -->
			<!-- ============================= -->
			<fileset dir="${projects.dir}/queryengine-2.0/src" defaultexcludes="yes">
				<include name="gov/nih/nci/cagrid/fqp/processor/FederatedQueryEngine.java"/>
			</fileset>
			<fileset dir="${projects.dir}/data/build/src" defaultexcludes="yes">
				<include name="**/*.java"/>
			</fileset>

			<group title="Tumor Registry" packages="edu.duke.cabig.tumorregistry*:gov.nih.nci.cagrid.catriptumorregistry*"/>

			<group title="caIntegrator SNP" packages="gov.nih.nci.cagrid.cgems*:gov.nih.nci.caintegrator*"/>

			<group title="caTissue CORE" packages="gov.nih.nci.cagrid.catissuecore*:edu.wustl.catissuecore*"/>

			<group title="CAE" packages="edu.duke.catrip.cae*:gov.nih.nci.cagrid.cae*:edu.pitt.cabig.cae*"/>

			<group title="caTIES" packages="edu.upmc.opi.caBIG.caTIES.database.domain*:edu.upmc.opi.caBIG.caTIES.database.domain.client*"/>

			<group title="Distributed Query Engine" packages="gov.nih.nci.catrip.fqe*:gov.nih.nci.catrip.dcql*:gov.nih.nci.catrip.cqlquery*:gov.nih.nci.cagrid.fqp.processor*"/>

			<group title="caGrid Data Service" packages="gov.nih.nci.cagrid.cqlquery*:gov.nih.nci.cagrid.data*:gov.nih.nci.cagrid.cqlresultset:data.cagrid*"/>

			<doctitle><![CDATA[<h1>caTRIP Silver API Documentation</h1>]]></doctitle>
			<bottom><![CDATA[<i>Copyright &#169; 2007 Duke Comprehensive Cancer Center. All Rights Reserved.</i>]]></bottom>
			<header><![CDATA[<img src="catrip_logo.jpg" width="60" height="60"/>]]></header>
		</javadoc>
	</target>

</project>
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