<commit_before>{ "name": "regulatory network",
  "interface": {
      "intro": {
	  "title": "regulatory network submission",
	  "text": "A regulatory network submission requires a text file (.txt) in RegPrecise format (<a href='http://regprecise.lbl.gov/RegPrecise/ExportServlet?type=gene&genomeId=52' target=_blank>see example</a>)",
	  "excel": false,
	  "json": false
      },
      "inputs": [
	  { 
	      "type": "text",
	      "label": "Enter genome id",
	      "help": null,
	      "default": "",
	      "data": null,
	      "isMetadata": false,
	      "aweVariable": "GENOME"
	  },
	  { 
	      "type": "multiselect",
	      "filetype": [ "txt" ],
	      "label": "select RegPrecise text file (e.g., bsub-regulons.txt)",
	      "help": null,
	      "default": null,
	      "data": null,
	      "isMetadata": false,
	      "aweVariable": "INPUTFILE"
	  }
      ]
  },
  "awe": {
      "tasks": [
	  {
	    "cmd": {
		  "args": "@##INPUTFILEFileName## @##GENOME## -w ##WORKSPACE##",
		  "description": "save data as regulatory network typed object",
		  "name": "fba-importregulome.pl",
	  "environ": {"KB_AUTH_TOKEN":""}
	      },
	      "dependsOn": [ ],
	      "inputs": {
		  "##INPUTFILEFileName##": {
		      "host": "##SHOCK##",
		      "node": "##INPUTFILE##"
		  },
		  "##GENOME##": {
		      "host": "##SHOCK##",
		      "node": "##GENOME##"
		  },
		  "metadatafile": {
		      "host": "##SHOCK##",
		      "node": "##METADATA##"
		  }
	      },
	      "taskid": "0",
	      "totalwork": 1
	  }
      ]
  }
}
<commit_msg>select one file<commit_after>{ "name": "regulatory network",
  "interface": {
      "intro": {
	  "title": "regulatory network submission",
	  "text": "A regulatory network submission requires a text file in RegPrecise format (<a href='http://regprecise.lbl.gov/RegPrecise/ExportServlet?type=gene&genomeId=52' target=_blank>see example</a>)",
	  "excel": false,
	  "json": false
      },
      "inputs": [
	  { 
	      "type": "text",
	      "label": "Enter genome id",
	      "help": null,
	      "default": "",
	      "data": null,
	      "isMetadata": false,
	      "aweVariable": "GENOME"
	  },
	  { 
	      "type": "dropdown",
	      "filetype": [ "txt" ],
	      "label": "select RegPrecise text file (e.g., bsub-regulons.txt)",
	      "help": null,
	      "default": null,
	      "data": null,
	      "isMetadata": false,
	      "aweVariable": "INPUTFILE"
	  }
      ]
  },
  "awe": {
      "tasks": [
	  {
	    "cmd": {
		  "args": "@##INPUTFILEFileName## @##GENOME## -w ##WORKSPACE##",
		  "description": "save data as regulatory network typed object",
		  "name": "fba-importregulome.pl",
	  "environ": {"KB_AUTH_TOKEN":""}
	      },
	      "dependsOn": [ ],
	      "inputs": {
		  "##INPUTFILEFileName##": {
		      "host": "##SHOCK##",
		      "node": "##INPUTFILE##"
		  },
		  "##GENOME##": {
		      "host": "##SHOCK##",
		      "node": "##GENOME##"
		  },
		  "metadatafile": {
		      "host": "##SHOCK##",
		      "node": "##METADATA##"
		  }
	      },
	      "taskid": "0",
	      "totalwork": 1
	  }
      ]
  }
}

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