<commit_before><!--
  ~ Copyright 2008-2010 Microarray Informatics Team, EMBL-European Bioinformatics Institute
  ~
  ~ Licensed under the Apache License, Version 2.0 (the "License");
  ~ you may not use this file except in compliance with the License.
  ~ You may obtain a copy of the License at
  ~
  ~ http://www.apache.org/licenses/LICENSE-2.0
  ~
  ~ Unless required by applicable law or agreed to in writing, software
  ~ distributed under the License is distributed on an "AS IS" BASIS,
  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  ~ See the License for the specific language governing permissions and
  ~ limitations under the License.
  ~
  ~
  ~ For further details of the Gene Expression Atlas project, including source code,
  ~ downloads and documentation, please see:
  ~
  ~ http://gxa.github.com/gxa
  -->

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    <title>Atlas Administration - Gene Expression Atlas</title>
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<div id="ae_pagecontainer">
<table id="menu">
    <tr>
        <td>
            <a href="./" title="Gene Expression Atlas Homepage"><img border="0" src="images/atlas-logo.png" width="70" alt="Gene Expression Atlas"/></a>
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        <td>
            &nbsp;
            <b>administration</b> |
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            <span id="logout">| <a href="#">logout</a> (you are <span id="userName"></span>)</span>
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    <li><a href="#tab-que">Tasks</a></li>
    <li><a href="#tab-exp">Experiments</a></li>
    <li><a href="#tab-ad">Array designs</a></li>
    <li><a href="#tab-prop">Configuration</a></li>
    <li><a href="#tab-asys">System info</a></li>
</ul>

<div id="tab-exp">
    <fieldset>
        <form action="#" id="experimentBrowseForm">
            <table>
                <tr>
                    <td class="label"><label for="experimentSearch">Experiment:</label></td>
                    <td colspan="2">
                        <input type="text" id="experimentSearch" class="value" style="width:400px;">
                        <input type="submit" style="display:none">
                    </td>
                    <td>
                        <img src="images/indicator.gif" alt="" width="16" height="16" style="visibility:hidden;" class="loadIndicator">
                    </td>
                </tr>
                <tr>
                    <td class="label"><label for="dateFrom">Load date:</label></td>
                    <td>
                        <input type="text" id="dateFrom" class="date value"> to <input type="text" id="dateTo" class="date value">
                    </td>
                    <td style="padding-left:20px;" align="right">
                        <select id="incompleteOnly" style="width:100%">                            
                            <option value="ALL">Any status</option>
                            <option value="COMPLETE">Fully complete</option>
                            <option value="INCOMPLETE">Incomplete by any means</option>
                            <option value="INCOMPLETE_ANALYTICS">Waiting for analytics rebuild</option>
                            <option value="INCOMPLETE_NETCDF">Waiting for NetCDF rebuild</option>
                            <option value="INCOMPLETE_INDEX">Waiting for indexing</option>
                        </select>
                    </td>
                    <td></td>                    
                </tr>
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        </form>
    </fieldset>

    <div id="experimentList">
        <table class="results">
            <thead class="expall">
                <tr>
                    <td class="sel">

                    </td>
                    <td class="accession">Accession</td>
                    <td>Load Date</td>
                    <td>Status</td>
                    <td>Description</td>
                    <td>Assays</td>
                    <td>History</td>
                </tr>
            </thead>
            <tbody>
                <tr class="exprow">
                    <td class="sel">
                        <input class="selector" type="checkbox" value="" id="selExp">
                    </td>
                    <td class="accession"><label class="accession" for="selExp">E-TABM-1</label></td>
                    <td class="loaddate">10/10/2010</td>
                    <td class="analytics">Loaded</td>
                    <td class="description">Blah</td>
                    <td class="numassays">Blah</td>
                    <td>
                        <a class="history" href="#">Show history</a>
                    </td>
                </tr>
                <tr class="expcoll whenanything">
                    <td class="sel">
                        <input checked="checked" disabled="disabled" id="selectCollapsed" type="checkbox">
                    </td>
                    <td colspan="6" class="selall">
                        <label for="selectCollapsed">Total <span class="total">4</span>  result(s) on pages </label>
                        &nbsp;&nbsp;&nbsp;                        
                        <span id="expPages" class="pagination_ie"></span>
                    </td>
                </tr>
                <tr class="expall">
                    <td class="sel">
                        <input id="selectAll" type="checkbox">
                    </td>
                    <td colspan="6" class="selall">
                        <label for="selectAll">Select all results <span class="expcoll">(on all pages)</span></label>
                    </td>
                </tr>
            </tbody>
        </table>
        
        <div class="none">
            No matching experiments found! Please check your query.
        </div>
        
        <fieldset class="expall opbuttons">
            <table class="rebuildIndex">
                <tr>
                    <td class="label">Index build is incomplete</td>
                    <td>
                        <input type="button" value="Rebuild index">
                    </td>
                </tr>
            </table>
            <input type="button" value="Repair" class="repair">
            <input type="button" value="Unload" class="unload">
            |
            <input type="button" value="Recompute analytics" class="analytics">
            <input type="button" value="Update NetCDFs" class="updatenetcdf">
            <input type="button" value="Update Index" class="updateindex">
            <div style="margin-top:5px;">
                <input type="checkbox" id="experimentAutodep" checked="checked">
                <label for="experimentAutodep">Automatically process depending tasks</label>
            </div>
        </fieldset>
    </div>
</div>

<div id="tab-ad">
    <fieldset>
        <form action="#" id="adBrowseForm">
            <table>
                <tr>
                    <td class="label"><label for="adSearch">Array design:</label></td>
                    <td>
                        <input type="text" id="adSearch" class="value" style="width:400px;"><commit_msg>- Allow to click "Rebuild index" even if no experiments selected<commit_after><!--
  ~ Copyright 2008-2010 Microarray Informatics Team, EMBL-European Bioinformatics Institute
  ~
  ~ Licensed under the Apache License, Version 2.0 (the "License");
  ~ you may not use this file except in compliance with the License.
  ~ You may obtain a copy of the License at
  ~
  ~ http://www.apache.org/licenses/LICENSE-2.0
  ~
  ~ Unless required by applicable law or agreed to in writing, software
  ~ distributed under the License is distributed on an "AS IS" BASIS,
  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  ~ See the License for the specific language governing permissions and
  ~ limitations under the License.
  ~
  ~
  ~ For further details of the Gene Expression Atlas project, including source code,
  ~ downloads and documentation, please see:
  ~
  ~ http://gxa.github.com/gxa
  -->

<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="eng">
<head>
    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
    <meta name="author" content="EBI Microarray Informatics Team" />
    <meta http-equiv="Content-Language" content="en-GB" />
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    <meta name="no-email-collection" content="http://www.unspam.com/noemailcollection/" />
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    <meta name="y_key" content="<KEY>">
    <title>Atlas Administration - Gene Expression Atlas</title>
    <script type="text/javascript" src="scripts/jquery-1.3.2.min.js"></script>
    <script type="text/javascript" src="scripts/jquery-ui-1.7.2.atlas.min.js"></script>
    <script type="text/javascript" src="scripts/jquery.pagination.js"></script>
    <script type="text/javascript" src="scripts/pure2.js"></script>
    <script type="text/javascript" src="scripts/admin.js"></script>
    <link rel="stylesheet" href="atlas.css" type="text/css" />
    <link rel="stylesheet" href="jquery-ui-1.7.2.atlas.css" type="text/css"/>
    <link rel="stylesheet" href="admin.css" type="text/css" />
</head>
<body>
<iframe src="http://www.ebi.ac.uk/inc/head.html" name="head" id="head" frameborder="0" marginwidth="0px" marginheight="0px" scrolling="no"  width="100%" style="z-index: 10; height: 57px;"></iframe>
<div id="ae_pagecontainer">
<table id="menu">
    <tr>
        <td>
            <a href="./" title="Gene Expression Atlas Homepage"><img border="0" src="images/atlas-logo.png" width="70" alt="Gene Expression Atlas"/></a>
        </td>
        <td>
            &nbsp;
            <b>administration</b> |
            <a href="./">home</a> |
            <a href="help">help</a>
            <span id="logout">| <a href="#">logout</a> (you are <span id="userName"></span>)</span>
        </td>
    </tr>
</table>

<div id="tabs">
<ul>
    <li><a href="#tab-que">Tasks</a></li>
    <li><a href="#tab-exp">Experiments</a></li>
    <li><a href="#tab-ad">Array designs</a></li>
    <li><a href="#tab-prop">Configuration</a></li>
    <li><a href="#tab-asys">System info</a></li>
</ul>

<div id="tab-exp">
    <fieldset>
        <form action="#" id="experimentBrowseForm">
            <table>
                <tr>
                    <td class="label"><label for="experimentSearch">Experiment:</label></td>
                    <td colspan="2">
                        <input type="text" id="experimentSearch" class="value" style="width:400px;">
                        <input type="submit" style="display:none">
                    </td>
                    <td>
                        <img src="images/indicator.gif" alt="" width="16" height="16" style="visibility:hidden;" class="loadIndicator">
                    </td>
                </tr>
                <tr>
                    <td class="label"><label for="dateFrom">Load date:</label></td>
                    <td>
                        <input type="text" id="dateFrom" class="date value"> to <input type="text" id="dateTo" class="date value">
                    </td>
                    <td style="padding-left:20px;" align="right">
                        <select id="incompleteOnly" style="width:100%">                            
                            <option value="ALL">Any status</option>
                            <option value="COMPLETE">Fully complete</option>
                            <option value="INCOMPLETE">Incomplete by any means</option>
                            <option value="INCOMPLETE_ANALYTICS">Waiting for analytics rebuild</option>
                            <option value="INCOMPLETE_NETCDF">Waiting for NetCDF rebuild</option>
                            <option value="INCOMPLETE_INDEX">Waiting for indexing</option>
                        </select>
                    </td>
                    <td></td>                    
                </tr>
            </table>
        </form>
    </fieldset>

    <div id="experimentList">
        <table class="results">
            <thead class="expall">
                <tr>
                    <td class="sel">

                    </td>
                    <td class="accession">Accession</td>
                    <td>Load Date</td>
                    <td>Status</td>
                    <td>Description</td>
                    <td>Assays</td>
                    <td>History</td>
                </tr>
            </thead>
            <tbody>
                <tr class="exprow">
                    <td class="sel">
                        <input class="selector" type="checkbox" value="" id="selExp">
                    </td>
                    <td class="accession"><label class="accession" for="selExp">E-TABM-1</label></td>
                    <td class="loaddate">10/10/2010</td>
                    <td class="analytics">Loaded</td>
                    <td class="description">Blah</td>
                    <td class="numassays">Blah</td>
                    <td>
                        <a class="history" href="#">Show history</a>
                    </td>
                </tr>
                <tr class="expcoll whenanything">
                    <td class="sel">
                        <input checked="checked" disabled="disabled" id="selectCollapsed" type="checkbox">
                    </td>
                    <td colspan="6" class="selall">
                        <label for="selectCollapsed">Total <span class="total">4</span>  result(s) on pages </label>
                        &nbsp;&nbsp;&nbsp;                        
                        <span id="expPages" class="pagination_ie"></span>
                    </td>
                </tr>
                <tr class="expall">
                    <td class="sel">
                        <input id="selectAll" type="checkbox">
                    </td>
                    <td colspan="6" class="selall">
                        <label for="selectAll">Select all results <span class="expcoll">(on all pages)</span></label>
                    </td>
                </tr>
            </tbody>
        </table>
        
        <div class="none">
            No matching experiments found! Please check your query.
        </div>
        
        <fieldset class="expall">
            <table class="rebuildIndex">
                <tr>
                    <td class="label">Index build is incomplete</td>
                    <td style="padding-left:10px">
                        <input type="button" value="Rebuild whole index">
                    </td>
                </tr>
            </table>
            <div class="opbuttons">
                <input type="button" value="Repair" class="repair">
                <input type="button" value="Unload" class="unload">
                |
                <input type="button" value="Recompute analytics" class="analytics">
                <input type="button" value="Update NetCDFs" class="updatenetcdf">
                <input type="button" value="Update Index" class="updateindex">
            </div>
            <div style="margin-top:5px;" class="opbuttons">
                <input type="checkbox" id="experimentAutodep" checked="checked">
                <label for="experimentAutodep">Automatically process depending tasks</label>
            </div>
        </fieldset>
    </div>
</div>

<div id="tab-ad">
    <fieldset>
        <form action="#" id="adBrowseForm">
            <table>
                <tr>
                    <td class="label"><label for="adSearch">Array design:</label></td>
                    <td>
                        <input type="text" id="adSearch" class="value" style="width:400px;">
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