<commit_before>#!/bin/bash
# Remove gcc statements that do not work on older compilers for CentOS5
# support, from https://github.com/chapmanb/bcbio-conda/blob/master/pysam/build.sh
sed -i'' -e 's/"-Wno-error=declaration-after-statement",//g' setup.py
sed -i'' -e 's/"-Wno-error=declaration-after-statement"//g' setup.py
#export HTSLIB_LIBRARY_DIR=$PREFIX/lib:$HTSLIB_LIBRARY_DIR
#export HTSLIB_INCLUDE_DIR=$PREFIX/include:$HTSLIB_INCLUDE_DIR
sed -i 's/HTSLIB_MODE = \"shared\"/HTSLIB_MODE = \"separate\"/g' setup.py
$PYTHON setup.py install
<commit_msg> update sed command in build.sh<commit_after>#!/bin/bash
# Remove gcc statements that do not work on older compilers for CentOS5
# support, from https://github.com/chapmanb/bcbio-conda/blob/master/pysam/build.sh
sed -i'' -e 's/"-Wno-error=declaration-after-statement",//g' setup.py
sed -i'' -e 's/"-Wno-error=declaration-after-statement"//g' setup.py
#export HTSLIB_LIBRARY_DIR=$PREFIX/lib:$HTSLIB_LIBRARY_DIR
#export HTSLIB_INCLUDE_DIR=$PREFIX/include:$HTSLIB_INCLUDE_DIR
sed -i'' -e 's/HTSLIB_MODE = \"shared\"/HTSLIB_MODE = \"separate\"/g' setup.py
$PYTHON setup.py install

{'fraction_non_alphanumeric': 0.15915119363395225, 'fraction_numerical': 0.0017683465959328027, 'mean_word_length': 5.118918918918919, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1513362', 'n_tokens_mistral': 452, 'n_tokens_neox': 429, 'n_words': 84}