<commit_before># Properties used to configure the web application
# The contents of this file are read into a Properties object that is stored
# as the WEB_PROPERTIES attribute in the Context

# these properties are used by synonymDisplayer.jsp:
ensembl.Drosophila.melanogaster.url.prefix=http://www.ensembl.org/Drosophila_melanogaster/geneview?db=core&gene=
ensembl.Anopheles.gambiae.url.prefix=http://www.ensembl.org/Anopheles_gambiae/geneview?db=core&gene=
ensembl.Apis.mellifera.url.prefix=http://apr2006.archive.ensembl.org/Apis_mellifera/geneview?gene=
FlyBase.Drosophila.melanogaster.url.prefix=http://www.flybase.org/.bin/fbidq.html?
FlyBase.Drosophila.pseudoobscura.url.prefix=http://www.flybase.org/.bin/fbidq.html?
WormBase.Caenorhabditis.elegans.url.prefix=http://www.wormbase.org/db/gene/gene?name=

UniProt.Drosophila.melanogaster.url.prefix=http://www.uniprot.org/entry/
UniProt.Caenorhabditis.elegans.url.prefix=http://www.uniprot.org/entry/
UniProt.Anopheles.gambiae.url.prefix=http://www.uniprot.org/entry/
UniProt.Saccharomyces.cerevisiae.url.prefix=http://www.uniprot.org/entry/
UniProt.Apis.mellifera.url.prefix=http://www.uniprot.org/entry/
UniProt.Drosophila.pseudoobscura.url.prefix=http://www.uniprot.org/entry/

TrEMBL.Drosophila.melanogaster.url.prefix=http://www.uniprot.org/entry/
TrEMBL.Caenorhabditis.elegans.url.prefix=http://www.uniprot.org/entry/
TrEMBL.Anopheles.gambiae.url.prefix=http://www.uniprot.org/entry/
TrEMBL.Saccharomyces.cerevisiae.url.prefix=http://www.uniprot.org/entry/

Swiss-Prot.Drosophila.melanogaster.url.prefix=http://www.uniprot.org/entry/
Swiss-Prot.Caenorhabditis.elegans.url.prefix=http://www.uniprot.org/entry/
Swiss-Prot.Anopheles.gambiae.url.prefix=http://www.uniprot.org/entry/
Swiss-Prot.Saccharomyces.cerevisiae.url.prefix=http://www.uniprot.org/entry/

DrosDel.Drosophila.melanogaster.url.prefix=http://www.drosdel.org.uk/search_del_order.php?del_name=

FlyReg.Drosophila.melanogaster.url.prefix=http://www.flyreg.org


# miscellaneous properties

InterPro.url.prefix=http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=

ProDom.url.prefix=http://protein.toulouse.inra.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=

PANTHER.url.prefix=https://panther.appliedbiosystems.com/panther/family.do?clsAccession=

# NOTE: THE TrEMBL stuff actually comes from TIGR!!!
TrEMBL.url.prefix=http://www.tigr.org/tigr-scripts/CMR2/hmm_report.spl?acc=

Superfamily.url.prefix=http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=

PRINTS.url.prefix=http://umber.sbs.man.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&regexpr=off&prints_accn=

PROSITE_patterns.url.prefix=http://www.expasy.org/cgi-bin/prosite-search-ac?
PROSITE_profiles.url.prefix=http://www.expasy.org/cgi-bin/prosite-search-ac?
# PROSITE_preprofiles.url.prefix= NO_VALID_SEARCH_TOOL_FOUND_FOR_PREPROFILES

ncbi.taxonomy.url.prefix=http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=
pubmed.url.prefix=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=
Pfam.url.prefix=http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?

OMIM.url.prefix=http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=


project.status=FlyMine is currently in Beta <a href="http://www.flymine.org/webapp/status.html">[more...]</a>

begin.browse.prompt=Enter an identifier or synonym (e.g. 'zen', 'Q9V4E1')
begin.browse.template=A_IdentifierSynonym_Object

bag.id-to-object.template=A_IdentifierSynonym_Object

portal.welcome.flybase = Welcome to FlyMine.  This page provides a summary of the information available for the selected FlyBase gene.<ul><li>To find out what you can do with FlyMine <a href="http://www.flymine.org/what">click here</a>.<li>Navigate to further information via <b>[details...]</b>.  For example, for protein data follow the <b>[details...]</b> link by 'Protein'.</li><li>Click on <b>'Home'</b> above to go to the main FlyMine start page.</li><li>For help, use the <b>[help...]</b> and <b>?</b> links or contact us using the <b>feedback form</b> at the bottom of the page.</li></ul>
portal.verbose.fields.Gene=chromosome,proteins,GOTerms,orthologues

feedback.title = Provide feedback to FlyMine...


bag.example.comment = Try a demo set of identifiers, it includes a mix of identifier types including a protein identifier

bag.example.identifiers=CG4807 CG9151 Adf1 ap CG3629 FBgn0004104 emc Tbp TfIIB FBgn0010282 FBgn0010287 TAF250 Taf6 Taf11 CG12399 CG1775 CG6711 FBgn0013347 nej Rbf Taf7 Smox CG3069 CG2859 Tfb4 Tfb2 CG11639 TWIST_DROME 

google.analytics.id=UA-1566492-2<commit_msg>Updated list of example identifiers for bag creation.<commit_after># Properties used to configure the web application
# The contents of this file are read into a Properties object that is stored
# as the WEB_PROPERTIES attribute in the Context

# these properties are used by synonymDisplayer.jsp:
ensembl.Drosophila.melanogaster.url.prefix=http://www.ensembl.org/Drosophila_melanogaster/geneview?db=core&gene=
ensembl.Anopheles.gambiae.url.prefix=http://www.ensembl.org/Anopheles_gambiae/geneview?db=core&gene=
ensembl.Apis.mellifera.url.prefix=http://apr2006.archive.ensembl.org/Apis_mellifera/geneview?gene=
FlyBase.Drosophila.melanogaster.url.prefix=http://www.flybase.org/.bin/fbidq.html?
FlyBase.Drosophila.pseudoobscura.url.prefix=http://www.flybase.org/.bin/fbidq.html?
WormBase.Caenorhabditis.elegans.url.prefix=http://www.wormbase.org/db/gene/gene?name=

UniProt.Drosophila.melanogaster.url.prefix=http://www.uniprot.org/entry/
UniProt.Caenorhabditis.elegans.url.prefix=http://www.uniprot.org/entry/
UniProt.Anopheles.gambiae.url.prefix=http://www.uniprot.org/entry/
UniProt.Saccharomyces.cerevisiae.url.prefix=http://www.uniprot.org/entry/
UniProt.Apis.mellifera.url.prefix=http://www.uniprot.org/entry/
UniProt.Drosophila.pseudoobscura.url.prefix=http://www.uniprot.org/entry/

TrEMBL.Drosophila.melanogaster.url.prefix=http://www.uniprot.org/entry/
TrEMBL.Caenorhabditis.elegans.url.prefix=http://www.uniprot.org/entry/
TrEMBL.Anopheles.gambiae.url.prefix=http://www.uniprot.org/entry/
TrEMBL.Saccharomyces.cerevisiae.url.prefix=http://www.uniprot.org/entry/

Swiss-Prot.Drosophila.melanogaster.url.prefix=http://www.uniprot.org/entry/
Swiss-Prot.Caenorhabditis.elegans.url.prefix=http://www.uniprot.org/entry/
Swiss-Prot.Anopheles.gambiae.url.prefix=http://www.uniprot.org/entry/
Swiss-Prot.Saccharomyces.cerevisiae.url.prefix=http://www.uniprot.org/entry/

DrosDel.Drosophila.melanogaster.url.prefix=http://www.drosdel.org.uk/search_del_order.php?del_name=

FlyReg.Drosophila.melanogaster.url.prefix=http://www.flyreg.org


# miscellaneous properties

InterPro.url.prefix=http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=

ProDom.url.prefix=http://protein.toulouse.inra.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=

PANTHER.url.prefix=https://panther.appliedbiosystems.com/panther/family.do?clsAccession=

# NOTE: THE TrEMBL stuff actually comes from TIGR!!!
TrEMBL.url.prefix=http://www.tigr.org/tigr-scripts/CMR2/hmm_report.spl?acc=

Superfamily.url.prefix=http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=

PRINTS.url.prefix=http://umber.sbs.man.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&regexpr=off&prints_accn=

PROSITE_patterns.url.prefix=http://www.expasy.org/cgi-bin/prosite-search-ac?
PROSITE_profiles.url.prefix=http://www.expasy.org/cgi-bin/prosite-search-ac?
# PROSITE_preprofiles.url.prefix= NO_VALID_SEARCH_TOOL_FOUND_FOR_PREPROFILES

ncbi.taxonomy.url.prefix=http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=
pubmed.url.prefix=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=
Pfam.url.prefix=http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?

OMIM.url.prefix=http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=


project.status=FlyMine is currently in Beta <a href="http://www.flymine.org/webapp/status.html">[more...]</a>

begin.browse.prompt=Enter an identifier or synonym (e.g. 'zen', 'Q9V4E1')
begin.browse.template=A_IdentifierSynonym_Object

bag.id-to-object.template=A_IdentifierSynonym_Object

portal.welcome.flybase = Welcome to FlyMine.  This page provides a summary of the information available for the selected FlyBase gene.<ul><li>To find out what you can do with FlyMine <a href="http://www.flymine.org/what">click here</a>.<li>Navigate to further information via <b>[details...]</b>.  For example, for protein data follow the <b>[details...]</b> link by 'Protein'.</li><li>Click on <b>'Home'</b> above to go to the main FlyMine start page.</li><li>For help, use the <b>[help...]</b> and <b>?</b> links or contact us using the <b>feedback form</b> at the bottom of the page.</li></ul>
portal.verbose.fields.Gene=chromosome,proteins,GOTerms,orthologues

feedback.title = Provide feedback to FlyMine...


bag.example.comment = Try a demo set of identifiers, it includes a mix of identifier types including a protein identifier

bag.example.identifiers=CG4807 CG9151 Adf1 ap CG3629 FBgn0004104 emc CG9874 TfIIB FBgn0010282 FBgn0010287 TAF250 CG32211 CG4079 CG12399 CG1775 CG6711 FBgn0013347 nej Rbf CG2670 CG2262 CG3069 CG2859 Tfb4 Tfb2 CG11639 TWIST_DROME 

google.analytics.id=UA-1566492-2
{'fraction_non_alphanumeric': 0.14436885865457294, 'fraction_numerical': 0.021703919663103338, 'mean_word_length': 5.5548478414720455, 'pattern_counts': {'":': 0, '<': 53, '<?xml version=': 0, '>': 53, 'https://': 2, 'lorem ipsum': 0, 'www.': 64, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '397391', 'n_tokens_mistral': 3910, 'n_tokens_neox': 3509, 'n_words': 460}