<commit_before><!DOCTYPE ui:UiBinder SYSTEM "http://dl.google.com/gwt/DTD/xhtml.ent">
<ui:UiBinder xmlns:ui="urn:ui:com.google.gwt.uibinder"
	xmlns:g="urn:import:com.google.gwt.user.client.ui" xmlns:w="urn:import:edu.mit.scansite.client.ui.widgets.motifs">
	<g:HTMLPanel>
		<fieldset>
			<legend>Protein Identifier</legend>
			<ol>
				<li>
					<w:MotifClassWidget ui:field="motifClassWidget"
						radioButtonGroupName="motifClassMotifInfo" />
				</li>
				<li>
					<label for="motifListBoxId">
						Motif
					</label>
					<g:ListBox ui:field="motifListBox" />
				</li>
				<li>
					<g:Button ui:field="toggleButton">Switch to polar &amp; non-polar coloring</g:Button>
				</li>
			</ol>
		</fieldset>
		<div class="note">
			<strong>Note about motif logos:</strong>
			We enabled Scansite4 to also match quite uncommon amino acids, like
			Pyrrolysine (O) and Selenocysteine (U) which use the affinities of
			Lysine (K) and Cysteine (C) if no specific values for these amino acids
			are given, respectively. In addition, you might notice '$' or '!' in some
			motif logos: If binding motifs have some preference for an amino acids
			terminus, '$' is used to represent the N-terminus, and '!' the C-Terminus.
            <br/><br/>
			<table>
                <tr>
                    <td><strong>General Color Code: </strong>&nbsp;&nbsp;</td>
                    <td><font color="#FA4B0A">NEGATIVE</font>&nbsp;&nbsp;&nbsp;&nbsp;</td><commit_msg>Adjusted the Motof Logo description to the removed O/U<commit_after><!DOCTYPE ui:UiBinder SYSTEM "http://dl.google.com/gwt/DTD/xhtml.ent">
<ui:UiBinder xmlns:ui="urn:ui:com.google.gwt.uibinder"
	xmlns:g="urn:import:com.google.gwt.user.client.ui" xmlns:w="urn:import:edu.mit.scansite.client.ui.widgets.motifs">
	<g:HTMLPanel>
		<fieldset>
			<legend>Protein Identifier</legend>
			<ol>
				<li>
					<w:MotifClassWidget ui:field="motifClassWidget"
						radioButtonGroupName="motifClassMotifInfo" />
				</li>
				<li>
					<label for="motifListBoxId">
						Motif
					</label>
					<g:ListBox ui:field="motifListBox" />
				</li>
				<li>
					<g:Button ui:field="toggleButton">Switch to polar &amp; non-polar coloring</g:Button>
				</li>
			</ol>
		</fieldset>
		<div class="note">
			<strong>Note about motif logos:</strong>
			You might notice '$' or '!' in some motif logos: If binding motifs have some preference
			for an amino acids terminus, '$' is used to represent the N-terminus, and '!' the C-Terminus.
            <br/><br/>
			<table>
                <tr>
                    <td><strong>General Color Code: </strong>&nbsp;&nbsp;</td>
                    <td><font color="#FA4B0A">NEGATIVE</font>&nbsp;&nbsp;&nbsp;&nbsp;</td>
{'fraction_non_alphanumeric': 0.1553002223869533, 'fraction_numerical': 0.0018532246108228317, 'mean_word_length': 3.2570977917981074, 'pattern_counts': {'":': 0, '<': 75, '<?xml version=': 0, '>': 75, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 6}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2503688', 'n_tokens_mistral': 1123, 'n_tokens_neox': 916, 'n_words': 206}