<commit_before>{% set name = "wgs-assembler" %}
{% set version = "8.3" %}

package:
  name: {{ name }}
  version: {{ version }}

about:
  home: 'http://wgs-assembler.sourceforge.net/wiki/index.php?title=Main_Page'
  license: MIT
  summary: "Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler"

source:
  fn: wgs-{{ version }}rc2.tar.bz2
  url: http://downloads.sourceforge.net/project/wgs-assembler/wgs-assembler/wgs-{{ version }}/wgs-{{ version }}rc2.tar.bz2
  md5: 70e8efea279d7061718d442a8c1217b3

build:
  number: 0
  skip: True # [not py27 or osx]

requirements:
  build:
    - automake
    - autoconf
    - gcc # [not osx]
    - llvm # [osx]
    - python
    - bzip2
    - perl-threaded
    - estmapper
    - atac
    - sim4db
    - meryl
    - falcon

  run:
    - libgcc # [not osx]
    - blasr
    - pbdagcon
    - jellyfish
    - samtools
    - pbutgcns


test:
    commands:
        - runCA -version<commit_msg>Remove a run requirement<commit_after>{% set name = "wgs-assembler" %}
{% set version = "8.3" %}

package:
  name: {{ name }}
  version: {{ version }}

about:
  home: 'http://wgs-assembler.sourceforge.net/wiki/index.php?title=Main_Page'
  license: MIT
  summary: "Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler"

source:
  fn: wgs-{{ version }}rc2.tar.bz2
  url: http://downloads.sourceforge.net/project/wgs-assembler/wgs-assembler/wgs-{{ version }}/wgs-{{ version }}rc2.tar.bz2
  md5: 70e8efea279d7061718d442a8c1217b3

build:
  number: 0
  skip: True # [not py27 or osx]

requirements:
  build:
    - automake
    - autoconf
    - gcc # [not osx]
    - llvm # [osx]
    - python
    - bzip2
    - perl-threaded
    - estmapper
    - atac
    - sim4db
    - meryl
    - falcon

  run:
    - libgcc # [not osx]
    - blasr
    - jellyfish
    - samtools
    - pbdagcon

test:
    commands:
        - runCA -version
{'fraction_non_alphanumeric': 0.13442277279915657, 'fraction_numerical': 0.03584607274644175, 'mean_word_length': 2.4259927797833933, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '948507', 'n_tokens_mistral': 810, 'n_tokens_neox': 760, 'n_words': 165}