<commit_before>*************
CCLE Data Set
*************

About the CCLE program
-----------------------
The Cancer Cell Line Encyclopedia (CCLE) project is an effort to conduct a detailed genetic characterization of a large panel of human cancer cell lines. The CCLE provides public access analysis and visualization of DNA copy number, mRNA expression, mutation data and more, for 1000 cancer cell lines.

About the CCLE Data
-------------------
The CCLE aligned reads (BAM files) are currently available in an open-access Cloud Storage bucket which you can browse `here <https://console.cloud.google.com/storage/browser/gdc-ccle-open/>`_.

An older set of BigQuery tables containing CCLE data are available in the ``isb-cgc.ccle_201602_alpha`` `dataset <https://console.cloud.google.com/bigquery?p=isb-cgc&d=ccle_201602_alpha&page=dataset>`_. This data will be updated and reformatted to look more like the newer TCGA and TARGET datasets after the GDC formally releases CCLE, to optimize usage in the cancer research community.
<commit_msg>Updated to include new data set<commit_after>*************
CCLE Data Set
*************

About the CCLE program
-----------------------
The Cancer Cell Line Encyclopedia (CCLE) project is an effort to conduct a detailed genetic characterization of a large panel of human cancer cell lines. The CCLE provides public access analysis and visualization of DNA copy number, mRNA expression, mutation data and more, for 1000 cancer cell lines.

About the CCLE Data
-------------------
The CCLE aligned reads (BAM files) are currently available in an open-access Cloud Storage bucket which you can browse `here <https://console.cloud.google.com/storage/browser/gdc-ccle-open/>`_.

An older set of BigQuery tables containing CCLE data are available in the ``isb-cgc.ccle_201602_alpha`` `data set <https://console.cloud.google.com/bigquery?p=isb-cgc&d=ccle_201602_alpha&page=dataset>`_. This data has been updated and reformatted to look more like the newer TCGA and TARGET datasets, to optimize usage in the cancer research community. The new table containing the reformatted data are availabe in the ``isb-cgc.CCLE_bioclin_v0`` `data set <https://console.cloud.google.com/bigquery?p=isb-cgc&d=CCLE_bioclin_v0&page=dataset>`_ .

{'fraction_non_alphanumeric': 0.12157382847038019, 'fraction_numerical': 0.015030946065428824, 'mean_word_length': 4.250580046403712, 'pattern_counts': {'":': 0, '<': 8, '<?xml version=': 0, '>': 8, 'https://': 5, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1870318', 'n_tokens_mistral': 636, 'n_tokens_neox': 585, 'n_words': 271}