<commit_before>package org.broadinstitute.hail.driver

import org.broadinstitute.hail.Utils._
import org.kohsuke.args4j.{Option => Args4jOption}

object Write extends Command {
  class Options extends BaseOptions {
    @Args4jOption(required = true, name = "-o", aliases = Array("--output"), usage = "Output file")
    var output: String = _
  }

  def newOptions = new Options

  def name = "write"

  def description = "Write current dataset as .vds file"

  def run(state:State,options:Options):State = {
    hadoopDelete(options.output, state.hadoopConf, true)
    state.vds.write(state.sqlContext, options.output)
    state
  }
}<commit_msg>fix for easy merging<commit_after>package org.broadinstitute.hail.driver

import org.broadinstitute.hail.Utils._
import org.kohsuke.args4j.{Option => Args4jOption}

object Write extends Command {
  class Options extends BaseOptions {
    @Args4jOption(required = true, name = "-o", aliases = Array("--output"), usage = "Output file")
    var output: String = _
  }
  def newOptions = new Options

  def name = "write"
  def description = "Write current dataset as .vds file"

  def run(state: State, options: Options): State = {
    hadoopDelete(options.output, state.hadoopConf, true)
    state.vds.write(state.sqlContext, options.output)
    state
  }
}
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