<commit_before>package gui;

import java.io.BufferedReader;
import java.io.IOException;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.util.ArrayList;
import java.util.Optional;

import chem.Atom;
import chem.Molecule;
import chem.Shape;
import javafx.event.ActionEvent;
import javafx.event.EventHandler;
import javafx.geometry.Insets;
import javafx.scene.Group;
import javafx.scene.PerspectiveCamera;
import javafx.scene.SceneAntialiasing;
import javafx.scene.SubScene;
import javafx.scene.control.Alert;
import javafx.scene.control.Alert.AlertType;
import javafx.scene.control.ChoiceDialog;
import javafx.scene.control.Label;
import javafx.scene.control.Menu;
import javafx.scene.control.MenuBar;
import javafx.scene.control.MenuItem;
import javafx.scene.control.Tab;
import javafx.scene.control.TabPane;
import javafx.scene.control.TabPane.TabClosingPolicy;
import javafx.scene.control.TextInputDialog;
import javafx.scene.input.ScrollEvent;
import javafx.scene.layout.BorderPane;
import javafx.scene.layout.VBox;
import run.UtilitoolsGUI;<commit_msg>Cleanup in MoleculaGUI class<commit_after>package gui;

import java.util.ArrayList;
import java.util.Optional;

import chem.Atom;
import chem.Molecule;
import chem.Shape;
import javafx.event.ActionEvent;
import javafx.event.EventHandler;
import javafx.geometry.Insets;
import javafx.scene.Group;
import javafx.scene.PerspectiveCamera;
import javafx.scene.SceneAntialiasing;
import javafx.scene.SubScene;
import javafx.scene.control.Alert;
import javafx.scene.control.Alert.AlertType;
import javafx.scene.control.ChoiceDialog;
import javafx.scene.control.Label;
import javafx.scene.control.Menu;
import javafx.scene.control.MenuBar;
import javafx.scene.control.MenuItem;
import javafx.scene.control.Tab;
import javafx.scene.control.TabPane;
import javafx.scene.control.TabPane.TabClosingPolicy;
import javafx.scene.control.TextInputDialog;
import javafx.scene.input.ScrollEvent;
import javafx.scene.layout.BorderPane;
import javafx.scene.layout.VBox;
import run.UtilitoolsGUI;
{'fraction_non_alphanumeric': 0.10019455252918288, 'fraction_numerical': 0.0, 'mean_word_length': 6.7330827067669174, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4859217', 'n_tokens_mistral': 650, 'n_tokens_neox': 648, 'n_words': 122}