<commit_before>{
    "REACHPATH": "~/workspace/lib/reach-82631d-biores-e9ee36.jar",
    "EIDOSPATH": "~/software/eidos/target/scala-2.12/eidos-assembly-0.1.6-SNAPSHOT.jar",
    "NDEX_USERNAME": "",
    "NDEX_PASSWORD": "",
    "REACH_VERSION": "",
    "ELSEVIER_API_KEY": "",
    "ELSEVIER_INST_KEY": "",
    "BIOGRID_API_KEY": "",
    "primary": "",
    "test-1": "",
    "test-2": "sqlite:///indra_test.db",
    "INDRA_DEFAULT_JAVA_MEM_LIMIT": "8g",
    "SPARSERPATH": ""
}
<commit_msg>Clean up and rearrange default config<commit_after>{
    // Path to the REACH reading system's fat JAR
    "REACHPATH": "",
    // Version of REACH
    "REACH_VERSION": "",
    // Path to the EIDOS reading system's fat JAR
    "EIDOSPATH": "",
    // Path to the Sparser reading system folder
    "SPARSERPATH": "",
    // The default memory limit for the Java/Scala interface
    // (BioPAX, REACH, EIDOS)
    "INDRA_DEFAULT_JAVA_MEM_LIMIT": "8g",
    // API keys to access Elsevier content
    "ELSEVIER_API_KEY": "",
    "ELSEVIER_INST_KEY": "",
    // API keys to access BioGRID content
    "BIOGRID_API_KEY": "",
    // Credendials for ndexbio.org
    "NDEX_USERNAME": "",
    "NDEX_PASSWORD": "",
    // Addresses to INDRA database instances
    "primary": "",
    "test-1": "",
    "test-2": "sqlite:///indra_test.db"
}

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{'dir': 'git-commits-cleaned', 'id': '2630015', 'n_tokens_mistral': 516, 'n_tokens_neox': 498, 'n_words': 96}