<commit_before>{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Assess and Monitor QCs, Internal Standards, and Common Metabolites\n",
    "\n",
    "## This notebook will guide people to\n",
    "* ## Identify their files\n",
    "* ## Specify the LC/MS method used\n",
    "* ## Specify the text-string used to differentiate blanks, QCs, and experimental injections\n",
    "* ## Populate the run log with the pass/fail outcome for each run\n",
    "\n",
    "## Run each block below.  They will indicate \"ok\" when completed.  Clear all output prior to starting makes it easier to tell when cells are completed."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# 1. Import required packages"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import sys\n",
    "# sys.path.insert(0,'/project/projectdirs/metatlas/projects/ms_monitor_tools' )\n",
    "sys.path.insert(0,'/global/homes/b/bpb/metatlas/')\n",
    "sys.path.insert(1,'/global/project/projectdirs/metatlas/anaconda/lib/python2.7/site-packages' )\n",
    "from metatlas import metatlas_objects as metob\n",
    "import pandas as pd\n",
    "from metatlas.gui import qgrid\n",
    "import warnings\n",
    "warnings.filterwarnings('ignore')\n",
    "from metatlas import ms_monitor_util as mtools\n",
    "%matplotlib inline"
   ]<commit_msg>fixed path removed from notebook<commit_after>{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Assess and Monitor QCs, Internal Standards, and Common Metabolites\n",
    "\n",
    "## This notebook will guide people to\n",
    "* ## Identify their files\n",
    "* ## Specify the LC/MS method used\n",
    "* ## Specify the text-string used to differentiate blanks, QCs, and experimental injections\n",
    "* ## Populate the run log with the pass/fail outcome for each run\n",
    "\n",
    "## Run each block below.  They will indicate \"ok\" when completed.  Clear all output prior to starting makes it easier to tell when cells are completed."
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# 1. Import required packages"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import sys\n",
    "sys.path.insert(0,'/global/project/projectdirs/metatlas/anaconda/lib/python2.7/site-packages' )\n",
    "import pandas as pd\n",
    "import warnings\n",
    "warnings.filterwarnings('ignore')\n",
    "from metatlas import ms_monitor_util as mtools\n",
    "%matplotlib inline"
   ]
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