<commit_before>package uk.ac.ebi.pride.archive.utils.tag;

import java.util.ArrayList;
import java.util.Collection;
import java.util.LinkedHashSet;

/**
 * A collection of project tags
 *
 *
 * @author <NAME>
 * @version $Id$
 */
public enum ProjectTag {
    BIOLOGICAL ("Biological", "Biological", ProjectTagType.PRIDE_INTERNAL),
    BIOMEDICAL ("Biomedical", "Biomedical", ProjectTagType.PRIDE_INTERNAL),
    TECHNICAL ("Technical", "Technical", ProjectTagType.PRIDE_INTERNAL),
    CARDIOVASCULAR ("Cardiovascular", "Cardiovascular", ProjectTagType.PRIDE_INTERNAL),
    METAPROTEMOICS ("Metaproteomics", "Metaproteomics", ProjectTagType.PRIDE_INTERNAL),
    REFERENCE ( "Reference", "RefData", ProjectTagType.PRIDE_INTERNAL),
    HIGHLIGHTED ("Highlighted", "Highlighted", ProjectTagType.PRIDE_HIGHLIGHTED),
    BILS_PROJECT ("Bioinformatics Infrastructure for Life Sciences (BILS) network (Sweden)", "BILS", ProjectTagType.PARENT_PROJECT),
    PRIME_XS_PROJECT ("PRIME-XS Project", "PRIME-XS", ProjectTagType.PARENT_PROJECT),
    HIPSIC_PROJECT("Human Induced Pluripotent Stem Cells Initiative", "HipSci", ProjectTagType.PARENT_PROJECT),
    CPTAC_CONSORTIUM ("CPTAC Consortium", "CPTAC", ProjectTagType.PARENT_PROJECT),
    PROTEOME_TOOLS ("ProteomeTools", "ProteomeTools", ProjectTagType.PARENT_PROJECT),
    HUMAN_PROTEOME_PROJECT ("Human Proteome Project", "HPP", ProjectTagType.PARENT_PROJECT),
    C_HUMAN_PROTEOME_PROJECT ("Chromosome-centric Human Proteome Project (C-HPP)", "C-HPP", ProjectTagType.PARENT_PROJECT),
    MALARIA_HOST_PATHOGEN_INTERACTION_CENTER ("Malaria Host Pathogen Interaction Center (MaHPIC)", "MaHPIC", ProjectTagType.PARENT_PROJECT),
    BD_HUMAN_PROTEOME_PROJECT ("Biology/Disease-Driven Human Proteome Project (B/D-HPP)", "B/D-HPP", ProjectTagType.PARENT_PROJECT),
    BD_ANTIBODIES_HUMAN_PROTEOME_PROJECT ("Antibodies (B/D-HPP)", "HAI (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_BRAIN_HUMAN_PROTEOME_PROJECT ("Human Brain Proteome Project (HUPO_HBPP) (B/D-HPP)", "HBPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_CANCER_HUMAN_PROTEOME_PROJECT ("Cancer (B/D-HPP)", "Cancer (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_CV_HUMAN_PROTEOME_PROJECT ("Cardiovascular (B/D-HPP)", "Cardiovascular (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_DIABETES_HUMAN_PROTEOME_PROJECT ("Diabetes (B/D-HPP)", "HDPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_EPIGENETIC_HUMAN_PROTEOME_PROJECT ("Epigenetic Chromatin (B/D-HPP)", "Epigenetic Chromatin (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_EXTREME_CONDITIONS_HUMAN_PROTEOME_PROJECT ("Extreme Conditions (B/D-HPP)", "Extreme Conditions (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_EYEOME_HUMAN_PROTEOME_PROJECT ("EyeOME (B/D-HPP)", "EyeOME (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_FOOD_NUTRITION_HUMAN_PROTEOME_PROJECT ("Food and Nutrition (B/D-HPP)", "FaN (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_GLUCOPROTEOMICS_HUMAN_PROTEOME_PROJECT ("Glycoproteomics (B/D-HPP)", "HGPI (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_IMMUNO_PEPTIDOMEHUMAN_PROTEOME_PROJECT ("Human Immuno-Peptidome Project (HUPO-HIPP)", "HIPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_iMOP_HUMAN_PROTEOME_PROJECT ("iMOP (B/D-HPP)", "iMOP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_KIDNEY_URINE_HUMAN_PROTEOME_PROJECT ("Kidney Urine (B/D-HPP)", "HKUPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_LIVER_HUMAN_PROTEOME_PROJECT ("Liver (B/D-HPP)", "HLPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_PEPIOME_HUMAN_PROTEOME_PROJECT ("PediOME (B/D-HPP)", "PediOME (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_PLASMA_HUMAN_PROTEOME_PROJECT ("Plasma (B/D-HPP)", "HPPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_PROTEIN_MISFOLDING_AGGREGATION_HUMAN_PROTEOME_PROJECT ("Protein Misfolding and Aggregation (B/D-HPP)", "Protein Misfolding (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_STEM_CELLS_HUMAN_PROTEOME_PROJECT ("Stems Cells (B/D-HPP)", "Stems Cells (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_SKELETAL_MUSCLEHUMAN_PROTEOME_PROJECT ("Skeletal Muscle Proteome (B/D-HPP)", "Skeletal Muscle Proteome (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_TOXICOPROTEOMICS_HUMAN_PROTEOME_PROJECT ("Toxicoproteomics (B/D-HPP)", "Toxicoproteomics (B/D-HPP)", ProjectTagType.PARENT_PROJECT);
    private String name;
    private String shortName;
    private ProjectTagType type;<commit_msg>New revused name for 'Malaria Host-Pathogen Interaction Center (MaHPIC)' tag.<commit_after>package uk.ac.ebi.pride.archive.utils.tag;

import java.util.ArrayList;
import java.util.Collection;
import java.util.LinkedHashSet;

/**
 * A collection of project tags
 *
 *
 * @author <NAME>
 * @version $Id$
 */
public enum ProjectTag {
    BIOLOGICAL ("Biological", "Biological", ProjectTagType.PRIDE_INTERNAL),
    BIOMEDICAL ("Biomedical", "Biomedical", ProjectTagType.PRIDE_INTERNAL),
    TECHNICAL ("Technical", "Technical", ProjectTagType.PRIDE_INTERNAL),
    CARDIOVASCULAR ("Cardiovascular", "Cardiovascular", ProjectTagType.PRIDE_INTERNAL),
    METAPROTEMOICS ("Metaproteomics", "Metaproteomics", ProjectTagType.PRIDE_INTERNAL),
    REFERENCE ( "Reference", "RefData", ProjectTagType.PRIDE_INTERNAL),
    HIGHLIGHTED ("Highlighted", "Highlighted", ProjectTagType.PRIDE_HIGHLIGHTED),
    BILS_PROJECT ("Bioinformatics Infrastructure for Life Sciences (BILS) network (Sweden)", "BILS", ProjectTagType.PARENT_PROJECT),
    PRIME_XS_PROJECT ("PRIME-XS Project", "PRIME-XS", ProjectTagType.PARENT_PROJECT),
    HIPSIC_PROJECT("Human Induced Pluripotent Stem Cells Initiative", "HipSci", ProjectTagType.PARENT_PROJECT),
    CPTAC_CONSORTIUM ("CPTAC Consortium", "CPTAC", ProjectTagType.PARENT_PROJECT),
    PROTEOME_TOOLS ("ProteomeTools", "ProteomeTools", ProjectTagType.PARENT_PROJECT),
    HUMAN_PROTEOME_PROJECT ("Human Proteome Project", "HPP", ProjectTagType.PARENT_PROJECT),
    C_HUMAN_PROTEOME_PROJECT ("Chromosome-centric Human Proteome Project (C-HPP)", "C-HPP", ProjectTagType.PARENT_PROJECT),
    MALARIA_HOST_PATHOGEN_INTERACTION_CENTER ("Malaria Host-Pathogen Interaction Center (MaHPIC)", "MaHPIC", ProjectTagType.PARENT_PROJECT),
    BD_HUMAN_PROTEOME_PROJECT ("Biology/Disease-Driven Human Proteome Project (B/D-HPP)", "B/D-HPP", ProjectTagType.PARENT_PROJECT),
    BD_ANTIBODIES_HUMAN_PROTEOME_PROJECT ("Antibodies (B/D-HPP)", "HAI (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_BRAIN_HUMAN_PROTEOME_PROJECT ("Human Brain Proteome Project (HUPO_HBPP) (B/D-HPP)", "HBPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_CANCER_HUMAN_PROTEOME_PROJECT ("Cancer (B/D-HPP)", "Cancer (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_CV_HUMAN_PROTEOME_PROJECT ("Cardiovascular (B/D-HPP)", "Cardiovascular (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_DIABETES_HUMAN_PROTEOME_PROJECT ("Diabetes (B/D-HPP)", "HDPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_EPIGENETIC_HUMAN_PROTEOME_PROJECT ("Epigenetic Chromatin (B/D-HPP)", "Epigenetic Chromatin (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_EXTREME_CONDITIONS_HUMAN_PROTEOME_PROJECT ("Extreme Conditions (B/D-HPP)", "Extreme Conditions (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_EYEOME_HUMAN_PROTEOME_PROJECT ("EyeOME (B/D-HPP)", "EyeOME (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_FOOD_NUTRITION_HUMAN_PROTEOME_PROJECT ("Food and Nutrition (B/D-HPP)", "FaN (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_GLUCOPROTEOMICS_HUMAN_PROTEOME_PROJECT ("Glycoproteomics (B/D-HPP)", "HGPI (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_IMMUNO_PEPTIDOMEHUMAN_PROTEOME_PROJECT ("Human Immuno-Peptidome Project (HUPO-HIPP)", "HIPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_iMOP_HUMAN_PROTEOME_PROJECT ("iMOP (B/D-HPP)", "iMOP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_KIDNEY_URINE_HUMAN_PROTEOME_PROJECT ("Kidney Urine (B/D-HPP)", "HKUPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_LIVER_HUMAN_PROTEOME_PROJECT ("Liver (B/D-HPP)", "HLPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_PEPIOME_HUMAN_PROTEOME_PROJECT ("PediOME (B/D-HPP)", "PediOME (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_PLASMA_HUMAN_PROTEOME_PROJECT ("Plasma (B/D-HPP)", "HPPP (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_PROTEIN_MISFOLDING_AGGREGATION_HUMAN_PROTEOME_PROJECT ("Protein Misfolding and Aggregation (B/D-HPP)", "Protein Misfolding (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_STEM_CELLS_HUMAN_PROTEOME_PROJECT ("Stems Cells (B/D-HPP)", "Stems Cells (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_SKELETAL_MUSCLEHUMAN_PROTEOME_PROJECT ("Skeletal Muscle Proteome (B/D-HPP)", "Skeletal Muscle Proteome (B/D-HPP)", ProjectTagType.PARENT_PROJECT),
    BD_TOXICOPROTEOMICS_HUMAN_PROTEOME_PROJECT ("Toxicoproteomics (B/D-HPP)", "Toxicoproteomics (B/D-HPP)", ProjectTagType.PARENT_PROJECT);
    private String name;
    private String shortName;
    private ProjectTagType type;
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{'dir': 'git-commits-cleaned', 'id': '936882', 'n_tokens_mistral': 3806, 'n_tokens_neox': 3411, 'n_words': 535}