<commit_before>class Stringtie < Formula
  desc "Transcript assembly and quantification for RNA-Seq"
  homepage "https://ccb.jhu.edu/software/stringtie"
  url "https://ccb.jhu.edu/software/stringtie/dl/stringtie-1.3.3b.tar.gz"
  sha256 "7fc6130029569083c36ad176919bc7d2a52b6436642a6276e665cb1d31cc0bfb"
  head "https://github.com/gpertea/stringtie.git"

  # doi "10.1038/nbt.3122"
  # tag "bioinformatics"

  bottle do
    cellar :any_skip_relocation
    sha256 "a4d882fcf75d0a17434834df2006526e6474c689d6a5ec129e4622af22457257" => :sierra
    sha256 "65bf922dbb1ff8ee9df0b52c116c345ea056b3c17f326e398cf0d06e9b620710" => :el_capitan
    sha256 "97361a509577b7b1a9ebb1c5211daeb870c28f1a372a8b5353ea2049ae6c3ffa" => :yosemite
    sha256 "053f4632ec563e224b46cb28429f2853019d579bd09d9e45114b2d810a8f6b7d" => :x86_64_linux
  end

  def install
    system "make", "release"
    bin.install "stringtie"
  end

  test do
    assert_match "transcripts", shell_output("#{bin}/stringtie 2>&1", 1)
  end
end<commit_msg>stringtie: update 1.3.3b bottle.<commit_after>class Stringtie < Formula
  desc "Transcript assembly and quantification for RNA-Seq"
  homepage "https://ccb.jhu.edu/software/stringtie"
  url "https://ccb.jhu.edu/software/stringtie/dl/stringtie-1.3.3b.tar.gz"
  sha256 "7fc6130029569083c36ad176919bc7d2a52b6436642a6276e665cb1d31cc0bfb"
  head "https://github.com/gpertea/stringtie.git"

  # doi "10.1038/nbt.3122"
  # tag "bioinformatics"

  bottle do
    cellar :any_skip_relocation
    sha256 "aaa241550ade89bd37cc7a8a21409e7e66a2a9a40a32f9ebb0fd5cea4425d869" => :sierra
    sha256 "fc1ef473f4edcad51978fd679edd9141553a1a5c9778caa8e9c64afe046d8dec" => :el_capitan
    sha256 "42aae1a1cb44b15a11464f66cfa0f6c5ac40ea021b47366a90cd2d1bb304cefc" => :yosemite
  end

  def install
    system "make", "release"
    bin.install "stringtie"
  end

  test do
    assert_match "transcripts", shell_output("#{bin}/stringtie 2>&1", 1)
  end
end
{'fraction_non_alphanumeric': 0.09742268041237113, 'fraction_numerical': 0.22061855670103092, 'mean_word_length': 5.281553398058253, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 12, 'https://': 6, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2792204', 'n_tokens_mistral': 1100, 'n_tokens_neox': 852, 'n_words': 111}