<commit_before>
{% set version = "2.12.0" %}
{% set sha256 = "48fc5a6a43f84570a48537fc5147d8c9d5889a95aed81765f2b9b603e6f53555" %}

package:
  name: metagenome-atlas
  version: {{ version }}

source:
  url: https://github.com/metagenome-atlas/atlas/archive/v{{ version }}.tar.gz
  sha256: {{ sha256 }}

build:
  number: 0
  entry_points:
    - atlas=atlas.atlas:cli
  noarch: python
  script: "{{ PYTHON }} -m pip install . --no-deps -vv"

requirements:
  host:
    - python >=3.8, <3.11
    - pip
  run:
    - python >=3.8, <3.11
    - mamba
    - bbmap >=38.99
    - snakemake-minimal >=7.15.1, <7.16
    - pygments
    - networkx
    - graphviz
    - pandas >=1.2, <1.5
    - pyarrow =8 # for parquet reading
    - click >=7
    - ruamel.yaml >=0.17
    - cookiecutter
    - pathlib
    # optional to help conda solve
    - numpy =1.21
 
test:
  imports:
    - atlas
  commands:
{% set export_lang = "export LC_ALL=en_US.UTF-8 && export LANG=en_US.UTF-8" %}
    - {{ export_lang }} && atlas --version
    - {{ export_lang }} && atlas init --help
    - {{ export_lang }} && atlas run --help

about:
  home: https://github.com/metagenome-atlas
  dev_url: https://github.com/metagenome-atlas/atlas<commit_msg>[ci skip] Merge PR 37322<commit_after>
{% set version = "2.12.0" %}

package:
  name: metagenome-atlas
  version: {{ version }}

source:
  url: https://github.com/metagenome-atlas/atlas/archive/v{{ version }}.tar.gz
  sha256: 527b649db0bf3b404ee00a9f2150f9dd529926e12253a51a326a54c8f02a6494

build:
  number: 1
  entry_points:
    - atlas=atlas.atlas:cli
  noarch: python
  script: "{{ PYTHON }} -m pip install . --no-deps -vv"

requirements:
  host:
    - python >=3.8, <3.11
    - pip
  run:
    - python >=3.8, <3.11
    - mamba
    - bbmap >=38.99
    - snakemake-minimal >=7.15.1, <7.16
    - pygments
    - networkx
    - graphviz
    - pandas >=1.2, <1.5
    - pyarrow >=8 # for parquet reading
    - click >=7
    - ruamel.yaml >=0.17
    - cookiecutter
    - pathlib
    # optional to help conda solve
    - numpy =1.21
 
test:
  imports:
    - atlas
  commands:
{% set export_lang = "export LC_ALL=en_US.UTF-8 && export LANG=en_US.UTF-8" %}
    - {{ export_lang }} && atlas --version
    - {{ export_lang }} && atlas init --help
    - {{ export_lang }} && atlas run --help

about:
  home: https://github.com/metagenome-atlas
  dev_url: https://github.com/metagenome-atlas/atlas
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