<commit_before>define([
	"dojo/_base/declare", "dijit/_WidgetBase", "dojo/_base/lang", "dojo/_base/Deferred",
	"dojo/on", "dojo/request", "dojo/dom-class", "dojo/dom-construct",
	"dojo/text!./templates/ComprehensiveGenomeAnalysis.html", "dojo/NodeList-traverse", "dojo/store/Memory",
	"dojox/xml/parser",
	"dijit/popup", "dijit/TooltipDialog", "dijit/Dialog",
	"./AppBase", "../../WorkspaceManager"
], function(declare, WidgetBase, lang, Deferred,
	on, xhr, domClass, domConstruct,
	Template, children, Memory,
	xmlParser,
	popup, TooltipDialog, Dialog,
	AppBase, WorkspaceManager){

	return declare([AppBase], {
		"baseClass": "App Assembly2",
		pageTitle: "Comprehensive Genome Analysis Service",
		templateString: Template,
		applicationName: "ComprehensiveGenomeAnalysis",
		applicationHelp: "user_guide/genome_data_and_tools/Comprehensive_genome_analysis_service.html",
		tutorialLink: "tutorial/comprehensive_genome_analysis/comprehensive_genome_analysis.html",
		libraryData: null,
		defaultPath: "",
		startingRows: 6,
		libCreated: 0,
		srrValidationUrl: "https://www.ebi.ac.uk/ena/data/view/{0}&display=xml",
		//below are from annotation
		required: true,<commit_msg>fixed typo in the user guide link.<commit_after>define([
	"dojo/_base/declare", "dijit/_WidgetBase", "dojo/_base/lang", "dojo/_base/Deferred",
	"dojo/on", "dojo/request", "dojo/dom-class", "dojo/dom-construct",
	"dojo/text!./templates/ComprehensiveGenomeAnalysis.html", "dojo/NodeList-traverse", "dojo/store/Memory",
	"dojox/xml/parser",
	"dijit/popup", "dijit/TooltipDialog", "dijit/Dialog",
	"./AppBase", "../../WorkspaceManager"
], function(declare, WidgetBase, lang, Deferred,
	on, xhr, domClass, domConstruct,
	Template, children, Memory,
	xmlParser,
	popup, TooltipDialog, Dialog,
	AppBase, WorkspaceManager){

	return declare([AppBase], {
		"baseClass": "App Assembly2",
		pageTitle: "Comprehensive Genome Analysis Service",
		templateString: Template,
		applicationName: "ComprehensiveGenomeAnalysis",
		applicationHelp: "user_guide/genome_data_and_tools/comprehensive_genome_analysis_service.html",
		tutorialLink: "tutorial/comprehensive_genome_analysis/comprehensive_genome_analysis.html",
		libraryData: null,
		defaultPath: "",
		startingRows: 6,
		libCreated: 0,
		srrValidationUrl: "https://www.ebi.ac.uk/ena/data/view/{0}&display=xml",
		//below are from annotation
		required: true,
{'fraction_non_alphanumeric': 0.1510307109802272, 'fraction_numerical': 0.0033655868742111907, 'mean_word_length': 6.206060606060606, 'pattern_counts': {'":': 2, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 2, 'lorem ipsum': 0, 'www.': 2, 'xml': 6}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6435739', 'n_tokens_mistral': 878, 'n_tokens_neox': 808, 'n_words': 141}