<commit_before>#!/bin/sh

home=/nfs/acari/gp1/work/ensj-healthcheck
web=/nfs/acari/gp1/WWW
java=/usr/opt/java141/bin/java

cp=$home
cp=$cp:$home/lib/ensj-healthcheck.jar
cp=$cp:$home/lib/mysql-connector-java-3.0.15-ga-bin.jar

cd $home

rm -f timings.txt

# comment/uncomment the ones to run

$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_aedes_aegypti.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_anopheles_gambiae.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_bos_taurus.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_caenorhabditis_elegans.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_canis_familiaris.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_ciona_intestinalis.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_ciona_savignyi.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_danio_rerio.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_dasypus_novemcinctus.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_drosophila_melanogaster.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_echinops_telfairi.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_gallus_gallus.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_gasterosteus_aculeatus.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_homo_sapiens.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_loxodonta_africana.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_monodelphis_domestica.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_macaca_mulatta.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_mus_musculus.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_oryctolagus_cuniculus.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_oryzias_latipes.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_pan_troglodytes.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_rattus_norvegicus.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_saccharomyces_cerevisiae.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_sus_scrofa.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_takifugu_rubripes.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_tetraodon_nigroviridis.properties
$java -server -classpath $cp org.ensembl.healthcheck.WebTestRunner $* -config web_xenopus_tropicalis.properties

cp -f $home/*.html $web
<commit_msg>Renamed from run-healthcheck-web2.sh<commit_after>#!/bin/sh

dir=$HOME/ensj-healthcheck
java=/usr/bin/java

cp=$dir
cp=$cp:$dir/lib/ensj-healthcheck.jar
cp=$cp:$dir/lib/mysql-connector-java-3.0.15-ga-bin.jar

cd $dir

$java -server -classpath $cp -Xmx512m org.ensembl.healthcheck.DatabaseTestRunner

#$java -server -classpath $cp org.ensembl.healthcheck.DatabaseToHTML -output $dir/web_healthchecks


{'fraction_non_alphanumeric': 0.11263440860215054, 'fraction_numerical': 0.00456989247311828, 'mean_word_length': 5.91635687732342, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4475043', 'n_tokens_mistral': 1344, 'n_tokens_neox': 1295, 'n_words': 233}