<commit_before>#!/usr/bin/env python

# Copyright 2014 Open Connectome Project (http://openconnecto.me)
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#

# ingest_graphs.py
# Created by <NAME> on 2014-02-10.
# Email: <EMAIL>

from paths import include
include()

import argparse
import os
from glob import glob
import MySQLdb
from contextlib import closing
import igraph
import zipfile
from time import time
from ocpipeline.settings_secret import DATABASES as db_args
from mrcap.utils import igraph_io
import numpy as np

def ingest(genera, tb_name, base_dir=None, files=None, project=None):
  if files:
    print "Running specific file(s) ..."
    assert len(genera) < 2, "Can only specify single genus as '-g [--genera] arg. You provided %s'" % genera 
    _ingest_files(files, genera[0])<commit_msg>bug in ingest fixed<commit_after>#!/usr/bin/env python

# Copyright 2014 Open Connectome Project (http://openconnecto.me)
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#

# ingest_graphs.py
# Created by <NAME> on 2014-02-10.
# Email: <EMAIL>

from paths import include
include()

import argparse
import os
from glob import glob
import MySQLdb
from contextlib import closing
import igraph
import zipfile
from time import time
from ocpipeline.settings_secret import DATABASES as db_args
from mrcap.utils import igraph_io
import numpy as np

def ingest(genera, tb_name, base_dir=None, files=None, project=None):
  if files:
    print "Running specific file(s) ..."
    assert len(genera) < 2, "Can only specify single genus as '-g [--genera] arg. You provided %s'" % genera 
    _ingest_files(files, genera[0], tb_name)
{'fraction_non_alphanumeric': 0.08215513947267863, 'fraction_numerical': 0.013756209400076424, 'mean_word_length': 4.420289855072464, 'pattern_counts': {'":': 0, '<': 9, '<?xml version=': 0, '>': 7, 'https://': 0, 'lorem ipsum': 0, 'www.': 2, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2268313', 'n_tokens_mistral': 787, 'n_tokens_neox': 746, 'n_words': 333}