<commit_before># -*- coding: utf-8 -*-
#BEGIN_HEADER
import sys
import traceback
from biokbase.workspace.client import Workspace as workspaceService
import requests
requests.packages.urllib3.disable_warnings()
import subprocess
import os
import re
from pprint import pprint, pformat
import uuid

# SDK Utils
#from ReadsUtils.ReadsUtilsClient import ReadsUtilsClient  # FIX
#from SetAPI.SetAPIClient import SetAPI
from SetAPI import SetAPIClient
#END_HEADER


class kb_trimmomatic:
    '''
    Module Name:
    kb_trimmomatic

    Module Description:
    A KBase module: kb_trimmomatic
This module contains two methods

runTrimmomatic() to backend a KBase App, potentially operating on ReadSets
execTrimmomatic() the local method that handles overloading Trimmomatic to run on a set or a single library
execTrimmomaticSingleLibrary() runs Trimmomatic on a single library
    '''<commit_msg>fix import<commit_after># -*- coding: utf-8 -*-
#BEGIN_HEADER
import sys
import traceback
from biokbase.workspace.client import Workspace as workspaceService
import requests
requests.packages.urllib3.disable_warnings()
import subprocess
import os
import re
from pprint import pprint, pformat
import uuid

# SDK Utils
#from ReadsUtils.ReadsUtilsClient import ReadsUtilsClient  # FIX
from SetAPI.SetAPIClient import SetAPI
#from SetAPI import SetAPIClient
#END_HEADER


class kb_trimmomatic:
    '''
    Module Name:
    kb_trimmomatic

    Module Description:
    A KBase module: kb_trimmomatic
This module contains two methods

runTrimmomatic() to backend a KBase App, potentially operating on ReadSets
execTrimmomatic() the local method that handles overloading Trimmomatic to run on a set or a single library
execTrimmomaticSingleLibrary() runs Trimmomatic on a single library
    '''
{'fraction_non_alphanumeric': 0.05070422535211268, 'fraction_numerical': 0.0022535211267605635, 'mean_word_length': 5.166666666666667, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4319625', 'n_tokens_mistral': 522, 'n_tokens_neox': 501, 'n_words': 193}