<commit_before>/*
 * The Gemma project
 * 
 * Copyright (c) 2006 Columbia University
 * 
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *       http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *
 */
package ubic.gemma.web.controller.visualization;

import java.io.Serializable;

import ubic.gemma.model.common.quantitationtype.QuantitationType;

/**
 * Expression experiment command object that wraps expression experiment visualization preferences.
 * 
 * @author keshav
 * @author pavlidis
 * @version $Id$
 */
public class ExpressionExperimentVisualizationCommand implements Serializable {

    private static final long serialVersionUID = 2166768356457316142L;

    private String searchCriteria = null;

    private String name = null;

    private Long expressionExperimentId = null;

    private String searchString = null;

    private boolean viewSampling;

    private String filename = null;

    private QuantitationType quantitationType = null;

    public ExpressionExperimentVisualizationCommand() {
        this.quantitationType = QuantitationType.Factory.newInstance();
    }

    /**
     * @return Returns the filename.
     */
    public String getFilename() {
        return filename;
    }

    /**
     * @param filename The filename to set.
     */
    public void setFilename( String filename ) {
        this.filename = filename;
    }

    /**
     * @return boolean
     */
    public boolean isViewSampling() {
        return viewSampling;
    }

    /**
     * @param viewSampling
     */
    public void setViewSampling( boolean viewSampling ) {
        this.viewSampling = viewSampling;
    }

    /**
     * @return String
     */
    public String getSearchString() {
        return searchString;
    }

    /**<commit_msg>removed filename<commit_after>/*
 * The Gemma project
 * 
 * Copyright (c) 2006 Columbia University
 * 
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *       http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *
 */
package ubic.gemma.web.controller.visualization;

import java.io.Serializable;

import ubic.gemma.model.common.quantitationtype.QuantitationType;

/**
 * Expression experiment command object that wraps expression experiment visualization preferences.
 * 
 * @author keshav
 * @author pavlidis
 * @version $Id$
 */
public class ExpressionExperimentVisualizationCommand implements Serializable {

    private static final long serialVersionUID = 2166768356457316142L;

    private String searchCriteria = null;

    private String name = null;

    private Long expressionExperimentId = null;

    private String searchString = null;

    private boolean viewSampling;

    private QuantitationType quantitationType = null;

    public ExpressionExperimentVisualizationCommand() {
        this.quantitationType = QuantitationType.Factory.newInstance();
    }

    /**
     * @return boolean
     */
    public boolean isViewSampling() {
        return viewSampling;
    }

    /**
     * @param viewSampling
     */
    public void setViewSampling( boolean viewSampling ) {
        this.viewSampling = viewSampling;
    }

    /**
     * @return String
     */
    public String getSearchString() {
        return searchString;
    }

    /**
{'fraction_non_alphanumeric': 0.07768875940762321, 'fraction_numerical': 0.013109978150036417, 'mean_word_length': 3.099502487562189, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 2, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2659846', 'n_tokens_mistral': 1109, 'n_tokens_neox': 1036, 'n_words': 367}