<commit_before>set(TestSources
    test/src/BasicTypesTest.cpp
    test/src/BitLibTest.cpp
    test/src/EndianTest.cpp
    test/src/MolLookupTest.cpp
    test/src/CircuitTester.cpp
    test/src/PSFParserTest.cpp
    test/src/ConsistentTrajectoryTest.cpp
    test/src/CheckpointTest.cpp
)

set(TestHeaders
    lib/NumLib.h
)

set(GOMCSources 
   src/BlockOutput.cpp
   src/BondAdjacencyList.cpp
   src/BoxDimensions.cpp
   src/BoxDimensionsNonOrth.cpp
   src/CBMC.cpp
   src/CellList.cpp
   src/ConfigSetup.cpp
   src/ConsoleOutput.cpp
   src/Coordinates.cpp
   src/CPUSide.cpp
   src/CalculateEnergy.cpp
   src/Checkpoint.cpp
   src/CheckpointOutput.cpp
   src/CheckpointSetup.cpp
   src/DCDlib.cpp
   src/ExtendedSystemOutput.cpp
   src/EnPartCntSampleOutput.cpp
   src/ExtendedSystem.cpp
   src/Ewald.cpp
   src/EwaldCached.cpp
   src/FFConst.cpp
   src/FFDihedrals.cpp
   src/FFParticle.cpp
   src/FFSetup.cpp
   src/Forcefield.cpp
   src/FreeEnergyOutput.cpp
   src/Geometry.cpp
   src/HistOutput.cpp
   src/InputFileReader.cpp
   src/MoleculeKind.cpp
   src/MoleculeLookup.cpp
   src/Molecules.cpp
   src/MolSetup.cpp
   src/MoveSettings.cpp
   src/NoEwald.cpp
   src/OutConst.cpp
   src/OutputVars.cpp
   src/ParallelTemperingPreprocessor.cpp
   src/ParallelTemperingUtilities.cpp
   src/PDBSetup.cpp
   src/PDBOutput.cpp
   src/PRNGSetup.cpp
   src/PSFOutput.cpp
   src/Random123Wrapper.cpp
   src/Reader.cpp
   src/Simulation.cpp
   src/StaticVals.cpp
   src/System.cpp
   src/cbmc/DCCrankShaftAng.cpp
   src/cbmc/DCCrankShaftDih.cpp
   src/cbmc/DCCyclic.cpp
   src/cbmc/DCGraph.cpp
   src/cbmc/DCFreeCycle.cpp
   src/cbmc/DCFreeHedron.cpp
   src/cbmc/DCFreeHedronSeed.cpp
   src/cbmc/DCFreeCycleSeed.cpp
   src/cbmc/DCLinkedHedron.cpp
   src/cbmc/DCLinkedCycle.cpp
   src/cbmc/DCHedron.cpp
   src/cbmc/DCHedronCycle.cpp
   src/cbmc/DCLinear.cpp
   src/cbmc/DCOnSphere.cpp
   src/cbmc/DCRotateCOM.cpp
   src/cbmc/DCRotateOnAtom.cpp
   src/cbmc/DCSingle.cpp
   src/cbmc/TrialMol.cpp)

set(GOMCHeaders
   src/BlockOutput.h
   src/BondAdjacencyList.h
   src/BoxDimensions.h
   src/BoxDimensionsNonOrth.h
   src/CalculateEnergy.h
   src/CBMC.h
   src/CellList.h
   src/Checkpoint.h
   src/CheckpointOutput.h
   src/CheckpointSetup.h
   src/Clock.h
   src/COM.h
   src/ConfigSetup.h
   src/ConsoleOutput.h
   src/ConstField.h
   src/Coordinates.h
   src/CoordinateSetup.h
   src/CPUSide.h
   src/DCDlib.h
   src/ExtendedSystemOutput.h
   src/EnergyTypes.h
   src/EnPartCntSampleOutput.h
   src/EnsemblePreprocessor.h
   src/ExtendedSystem.h
   src/Ewald.h
   src/EwaldCached.h  
   src/FFAngles.h
   src/FFBonds.h
   src/FFConst.h
   src/FFDihedrals.h
   src/FFExp6.h
   src/FFParticle.h
   src/FFSetup.h
   src/FFShift.h
   src/FFSwitch.h
   src/FFSwitchMartini.h
   src/FixedWidthReader.h
   src/Forcefield.h
   src/FreeEnergyOutput.h
   src/FxdWidthWrtr.h
   src/Geometry.h
   src/GOMCEventsProfile.h
   src/GOMCEventsProfileDef.h
   src/HistOutput.h
   src/InputAbstracts.h
   src/InputFileReader.h
   src/MersenneTwister.h
   src/MoleculeKind.h
   src/MoleculeLookup.h
   src/Molecules.h<commit_msg>update filelists<commit_after>set(TestSources
    test/src/BasicTypesTest.cpp
    test/src/BitLibTest.cpp
    test/src/EndianTest.cpp
    test/src/MolLookupTest.cpp
    #test/src/CircuitTester.cpp
    #test/src/PSFParserTest.cpp
    test/src/ConsistentTrajectoryTest.cpp
    test/src/CheckpointTest.cpp
)

set(TestHeaders
    lib/NumLib.h
)

set(GOMCSources 
   src/BlockOutput.cpp
   src/BondAdjacencyList.cpp
   src/BoxDimensions.cpp
   src/BoxDimensionsNonOrth.cpp
   src/CBMC.cpp
   src/CellList.cpp
   src/ConfigSetup.cpp
   src/ConsoleOutput.cpp
   src/Coordinates.cpp
   src/CPUSide.cpp
   src/CalculateEnergy.cpp
   src/Checkpoint.cpp
   src/CheckpointOutput.cpp
   src/CheckpointSetup.cpp
   src/DCDlib.cpp
   src/EnPartCntSampleOutput.cpp
   src/ExtendedSystem.cpp
   src/ExtendedSystemOutput.cpp
   src/Ewald.cpp
   src/EwaldCached.cpp
   src/FFConst.cpp
   src/FFDihedrals.cpp
   src/FFParticle.cpp
   src/FFSetup.cpp
   src/Forcefield.cpp
   src/FreeEnergyOutput.cpp
   src/Geometry.cpp
   src/HistOutput.cpp
   src/InputFileReader.cpp
   #src/Main.cpp
   src/MoleculeKind.cpp
   src/MoleculeLookup.cpp
   src/Molecules.cpp
   src/MolSetup.cpp
   src/MoveSettings.cpp
   src/NoEwald.cpp
   src/OutConst.cpp
   src/OutputVars.cpp
   src/ParallelTemperingPreprocessor.cpp
   src/ParallelTemperingUtilities.cpp
   src/PDBSetup.cpp
   src/PDBOutput.cpp
   src/PRNGSetup.cpp
   src/PSFOutput.cpp
   src/Random123Wrapper.cpp
   src/Reader.cpp
   src/Simulation.cpp
   src/StaticVals.cpp
   src/System.cpp
   src/cbmc/DCCrankShaftAng.cpp
   src/cbmc/DCCrankShaftDih.cpp
   src/cbmc/DCCyclic.cpp
   src/cbmc/DCGraph.cpp
   src/cbmc/DCFreeCycle.cpp
   src/cbmc/DCFreeHedron.cpp
   src/cbmc/DCFreeHedronSeed.cpp
   src/cbmc/DCFreeCycleSeed.cpp
   src/cbmc/DCLinkedHedron.cpp
   src/cbmc/DCLinkedCycle.cpp
   src/cbmc/DCHedron.cpp
   src/cbmc/DCHedronCycle.cpp
   src/cbmc/DCLinear.cpp
   src/cbmc/DCOnSphere.cpp
   src/cbmc/DCRotateCOM.cpp
   src/cbmc/DCRotateOnAtom.cpp
   src/cbmc/DCSingle.cpp
   src/cbmc/TrialMol.cpp)

set(GOMCHeaders
   src/BlockOutput.h
   src/BondAdjacencyList.h
   src/BoxDimensions.h
   src/BoxDimensionsNonOrth.h
   src/CalculateEnergy.h
   src/CBMC.h
   src/CellList.h
   src/Checkpoint.h
   src/CheckpointOutput.h
   src/CheckpointSetup.h
   src/Clock.h
   src/COM.h
   src/ConfigSetup.h
   src/ConsoleOutput.h
   src/ConstField.h
   src/Coordinates.h
   src/CoordinateSetup.h
   src/CPUSide.h
   src/DCDlib.h
   src/EnergyTypes.h
   src/EnPartCntSampleOutput.h
   src/EnsemblePreprocessor.h
   src/ExtendedSystem.h
   src/ExtendedSystemOutput.h
   src/Ewald.h
   src/EwaldCached.h  
   src/FFAngles.h
   src/FFBonds.h
   src/FFConst.h
   src/FFDihedrals.h
   src/FFExp6.h
   src/FFParticle.h
   src/FFSetup.h
   src/FFShift.h
   src/FFSwitch.h
   src/FFSwitchMartini.h
   src/FixedWidthReader.h
   src/Forcefield.h
   src/FreeEnergyOutput.h
   src/FxdWidthWrtr.h
   src/Geometry.h
   src/GOMCEventsProfile.h
   src/GOMCEventsProfileDef.h
   src/HistOutput.h
   src/InputAbstracts.h
   src/InputFileReader.h
   src/MersenneTwister.h
   src/MoleculeKind.h
   src/MoleculeLookup.h
   src/Molecules.h
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{'dir': 'git-commits-cleaned', 'id': '5859003', 'n_tokens_mistral': 2601, 'n_tokens_neox': 2594, 'n_words': 259}