<commit_before>{% set version = "4.0.2" %}

package:
  name: pangolin
  version: {{ version }}

source:
  url: https://github.com/cov-lineages/pangolin/archive/refs/tags/v{{ version }}.tar.gz
  sha256: 2178d17291a09766cddaca83f40cf9deb164ec8c1157c807e35d3d793091fc10

build:
  number: 1
  noarch: python
  script: python -m pip install --no-deps --ignore-installed .

requirements:
  host:
    - python >=3.7
    - pip
  run:
    - python >=3.7
    - biopython ==1.74
    - pandas >=1.0.1
    - joblib >=0.11
    - scikit-learn >=0.23.1
    - pulp >=2
    - minimap2 >=2.16
    - snakemake-minimal >=5.13,<=6.8.0
    - gofasta
    - usher >=0.5.2
    - ucsc-fatovcf >=426
    - git-lfs
    - scorpio >=0.3.12
    - constellations >=0.0.15
    - pangolin-data >=1.2.133.2

test:
  commands:
    - pangolin -h
    - pangolin --all-versions<commit_msg>[ci skip] Merge PR 34183<commit_after>{% set version = "4.0.3" %}

package:
  name: pangolin
  version: {{ version }}

source:
  url: https://github.com/cov-lineages/pangolin/archive/refs/tags/v{{ version }}.tar.gz
  sha256: d0fbc1256cb4c1d4126d025742763ddca53a12ee26dc4ad36e36d41f035991a2

build:
  number: 0
  noarch: python
  script: python -m pip install --no-deps --ignore-installed .

requirements:
  host:
    - python >=3.7
    - pip
  run:
    - python >=3.7
    - biopython ==1.74
    - pandas >=1.0.1
    - joblib >=0.11
    - scikit-learn >=0.23.1
    - pulp >=2
    - minimap2 >=2.16
    - snakemake-minimal >=5.13,<=6.8.0
    - gofasta
    - usher >=0.5.2
    - ucsc-fatovcf >=426
    - git-lfs
    - scorpio >=0.3.12
    - constellations >=0.0.15
    - pangolin-data >=1.2.133.2

test:
  commands:
    - pangolin -h
    - pangolin --all-versions
{'fraction_non_alphanumeric': 0.16032767700409598, 'fraction_numerical': 0.1146869514335869, 'mean_word_length': 2.2203389830508473, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 29, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 2, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6481235', 'n_tokens_mistral': 826, 'n_tokens_neox': 734, 'n_words': 139}