<commit_before># Validation for hg38/GRCh38
# https://bcbio-nextgen.readthedocs.org/en/latest/contents/testing.html#example-pipelines
#
# Uses two build 38 reference genomes
#  - hg38 -- full reference with alternative alleles and HLA
#  - hg38-noalt -- no alternative alleles
#  
# Uses 3 validation sets:
#  - Genome in a Bottle converted to build 38 with NCBI remap
#  - Genome in a Bottle converted to build 38 with CrossMap and a UCSC chain file
#  - Illumina's platinum genome
---
upload:
  dir: ../final
details:
  - files: [../input/NA12878_1.fastq.gz, ../input/NA12878_2.fastq.gz]<commit_msg>Remove trailing whitespace.<commit_after># Validation for hg38/GRCh38
# https://bcbio-nextgen.readthedocs.org/en/latest/contents/testing.html#example-pipelines
#
# Uses two build 38 reference genomes
#  - hg38 -- full reference with alternative alleles and HLA
#  - hg38-noalt -- no alternative alleles
#
# Uses 3 validation sets:
#  - Genome in a Bottle converted to build 38 with NCBI remap
#  - Genome in a Bottle converted to build 38 with CrossMap and a UCSC chain file
#  - Illumina's platinum genome
---
upload:
  dir: ../final
details:
  - files: [../input/NA12878_1.fastq.gz, ../input/NA12878_2.fastq.gz]
{'fraction_non_alphanumeric': 0.10955518945634267, 'fraction_numerical': 0.044481054365733116, 'mean_word_length': 3.533582089552239, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1203087', 'n_tokens_mistral': 468, 'n_tokens_neox': 393, 'n_words': 127}