<commit_before>##depends:start/macs2_pre.bash

# HTSeq, GPL v3 or later
# part 1
pip install HTSeq==0.6.1
wget_retry -O /usr/local/bin/htseq-count_chr http://$NIC_MIRROR/pub/sci/molbio/chipster/dist/tools_extras/htseq/htseq-count_chr 
chmod 755 /usr/local/bin/htseq-count_chr
wget_retry -O /usr/local/lib/python2.7/dist-packages/HTSeq/scripts/count_chr.py http://$NIC_MIRROR/pub/sci/molbio/chipster/dist/tools_extras/htseq/count_chr_v2.py
<commit_msg>testing sourcing the bash functions in modules<commit_after>##depends:start/macs2_pre.bash

# HTSeq, GPL v3 or later
# part 1
source ../installation_files/functions.bash
pip install HTSeq==0.6.1
wget_retry -O /usr/local/bin/htseq-count_chr http://$NIC_MIRROR/pub/sci/molbio/chipster/dist/tools_extras/htseq/htseq-count_chr 
chmod 755 /usr/local/bin/htseq-count_chr
wget_retry -O /usr/local/lib/python2.7/dist-packages/HTSeq/scripts/count_chr.py http://$NIC_MIRROR/pub/sci/molbio/chipster/dist/tools_extras/htseq/count_chr_v2.py

{'fraction_non_alphanumeric': 0.13585291113381, 'fraction_numerical': 0.024514811031664963, 'mean_word_length': 4.975609756097561, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5992672', 'n_tokens_mistral': 434, 'n_tokens_neox': 418, 'n_words': 52}