<commit_before>---
# Vars for tool installation

tool_build_packages:
  - "{{ percolator_build_packages }}"
  - "{{ pout2mzid_build_packages }}"
  - "{{ pycolator_build_packages }}"
  - "{{ msgfplus_build_packages }}"
  - "{{ openms_build_packages }}"

msgf_ver: 9949
msgf_pkg: msgfplus
msgf_url: http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.zip

percolator_url: https://github.com/percolator/percolator/archive/rel-2-07-02.tar.gz
percolator_src: percolator-rel-2-07-02
percolator_pkg: percolator
perconvert_pkg: percolator_converters
percolator_ver: 2.07
percolator_path: "{{ percolator_pkg }}/{{ percolator_ver }}"
perconvert_path: "{{ perconvert_pkg }}/{{ percolator_ver }}"
pout2mzid_pkg: pout2mzid
pout2mzid_ver: 0.3.1
pout2mzid_commit: d3a8740ad5a9ed61b4efa78a244f1531216c9860
pout2mzid_repo: git://github.com/percolator/pout2mzid
openms_pkg: openms
openms_ver: 1.11
openms_git_ver: 6a515dd1e23882ec60578a289920bf46ca4f525d
pwiz_url: http://data.mallicklab.com/download.php
pwiz_pkg: proteowizard
pwiz_ver: 3.0.6239
pycolator_pkg: pycolator
pycolator_ver: 0.1

pout2mzid_loc: "{{ tool_path }}/{{ pout2mzid_pkg }}/{{ pout2mzid_ver }}"
openms_loc: "{{ tool_path }}/{{ openms_pkg }}/{{ openms_ver }}"
pwiz_loc: "{{ tool_path }}/{{ pwiz_pkg }}/{{ pwiz_ver }}"

percolator_build_packages:
  - build-essential # percolator
  - git-core # pycolator
  - cmake # percolator
  - fakeroot # percolator<commit_msg>Other openms version<commit_after>---
# Vars for tool installation

tool_build_packages:
  - "{{ percolator_build_packages }}"
  - "{{ pout2mzid_build_packages }}"
  - "{{ pycolator_build_packages }}"
  - "{{ msgfplus_build_packages }}"
  - "{{ openms_build_packages }}"

msgf_ver: 9949
msgf_pkg: msgfplus
msgf_url: http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.zip

percolator_url: https://github.com/percolator/percolator/archive/rel-2-07-02.tar.gz
percolator_src: percolator-rel-2-07-02
percolator_pkg: percolator
perconvert_pkg: percolator_converters
percolator_ver: 2.07
percolator_path: "{{ percolator_pkg }}/{{ percolator_ver }}"
perconvert_path: "{{ perconvert_pkg }}/{{ percolator_ver }}"
pout2mzid_pkg: pout2mzid
pout2mzid_ver: 0.3.1
pout2mzid_commit: d<PASSWORD>740ad5a9ed61b4efa78a244f1531216c9860
pout2mzid_repo: git://github.com/percolator/pout2mzid
openms_pkg: openms
openms_ver: 1.11_night
openms_git_ver: 0d33fa16faf272f77e8ff1f0e9e230dcc5b9a149 
pwiz_url: http://data.mallicklab.com/download.php
pwiz_pkg: proteowizard
pwiz_ver: 3.0.6239
pycolator_pkg: pycolator
pycolator_ver: 0.1

pout2mzid_loc: "{{ tool_path }}/{{ pout2mzid_pkg }}/{{ pout2mzid_ver }}"
openms_loc: "{{ tool_path }}/{{ openms_pkg }}/{{ openms_ver }}"
pwiz_loc: "{{ tool_path }}/{{ pwiz_pkg }}/{{ pwiz_ver }}"

percolator_build_packages:
  - build-essential # percolator
  - git-core # pycolator
  - cmake # percolator
  - fakeroot # percolator
{'fraction_non_alphanumeric': 0.1373029772329247, 'fraction_numerical': 0.06339754816112084, 'mean_word_length': 5.865384615384615, 'pattern_counts': {'":': 0, '<': 4, '<?xml version=': 0, '>': 4, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '250167', 'n_tokens_mistral': 1336, 'n_tokens_neox': 1228, 'n_words': 157}