<commit_before><?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <parent>
    <groupId>org.sonatype.oss</groupId>
    <artifactId>oss-parent</artifactId>
    <version>7</version>
    <relativePath />
  </parent>

  <modelVersion>4.0.0</modelVersion>
  <groupId>org.bdgenomics.adam</groupId>
  <artifactId>adam-parent-spark2_2.11</artifactId>
  <version>0.24.0-SNAPSHOT</version>
  <packaging>pom</packaging>
  <name>ADAM_${scala.version.prefix}</name>
  <description>A fast, scalable genome analysis system</description>
  <url>http://bdgenomics.org/</url>

  <properties>
    <java.version>1.8</java.version>
    <avro.version>1.8.1</avro.version>
    <scala.version>2.11.12</scala.version>
    <scala.version.prefix>2.11</scala.version.prefix>
    <spark.version>2.2.1</spark.version>
    <parquet.version>1.8.2</parquet.version>
    <!-- Edit the following line to configure the Hadoop (HDFS) version. -->
    <hadoop.version>2.7.3</hadoop.version>
    <hadoop-bam.version>7.9.1</hadoop-bam.version>
    <slf4j.version>1.7.25</slf4j.version>
    <bdg-formats.version>0.11.3</bdg-formats.version>
    <bdg-utils.version>0.2.13</bdg-utils.version>
    <htsjdk.version>2.11.0</htsjdk.version>
    <scoverage.plugin.version>1.1.1</scoverage.plugin.version>
  </properties>
<commit_msg>[ADAM-1907] Bump to HTSJDK 2.13.2.<commit_after><?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <parent>
    <groupId>org.sonatype.oss</groupId>
    <artifactId>oss-parent</artifactId>
    <version>7</version>
    <relativePath />
  </parent>

  <modelVersion>4.0.0</modelVersion>
  <groupId>org.bdgenomics.adam</groupId>
  <artifactId>adam-parent-spark2_2.11</artifactId>
  <version>0.24.0-SNAPSHOT</version>
  <packaging>pom</packaging>
  <name>ADAM_${scala.version.prefix}</name>
  <description>A fast, scalable genome analysis system</description>
  <url>http://bdgenomics.org/</url>

  <properties>
    <java.version>1.8</java.version>
    <avro.version>1.8.1</avro.version>
    <scala.version>2.11.12</scala.version>
    <scala.version.prefix>2.11</scala.version.prefix>
    <spark.version>2.2.1</spark.version>
    <parquet.version>1.8.2</parquet.version>
    <!-- Edit the following line to configure the Hadoop (HDFS) version. -->
    <hadoop.version>2.7.3</hadoop.version>
    <hadoop-bam.version>7.9.1</hadoop-bam.version>
    <slf4j.version>1.7.25</slf4j.version>
    <bdg-formats.version>0.11.3</bdg-formats.version>
    <bdg-utils.version>0.2.13</bdg-utils.version>
    <htsjdk.version>2.13.2</htsjdk.version>
    <scoverage.plugin.version>1.1.1</scoverage.plugin.version>
  </properties>

{'fraction_non_alphanumeric': 0.197920161019792, 'fraction_numerical': 0.05300234820530023, 'mean_word_length': 3.912685337726524, 'pattern_counts': {'":': 0, '<': 115, '<?xml version=': 2, '>': 115, 'https://': 0, 'lorem ipsum': 0, 'www.': 2, 'xml': 6}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5403200', 'n_tokens_mistral': 1280, 'n_tokens_neox': 1175, 'n_words': 108}