<commit_before>biopython>=1.61
boto>=2.34.0
Cython>=0.19
ipyparallel>=4.0.0
ipython-cluster-helper>=0.4.9
Logbook>=0.6.0
lxml>=3.3.5
msgpack-python>=0.4.0
nose>=1.3.0
pandas>=0.14.1
progressbar>=2.3.0
pybedtools>=0.6.8
pysam>=0.8.2.1
pyzmq>=2.2.0
PyYAML>=3.10
toolz>=0.7.1
tornado>=3.1.0
# soft dependencies -- not required for bcbio-nextgen-vm
azure>=0.11.1
arrow>=0.4.4
awscli>=1.7.14
bioblend>=0.4.3
bcbreport>=0.99.16<commit_msg>Bump bcbreport version.<commit_after>biopython>=1.61
boto>=2.34.0
Cython>=0.19
ipyparallel>=4.0.0
ipython-cluster-helper>=0.4.9
Logbook>=0.6.0
lxml>=3.3.5
msgpack-python>=0.4.0
nose>=1.3.0
pandas>=0.14.1
progressbar>=2.3.0
pybedtools>=0.6.8
pysam>=0.8.2.1
pyzmq>=2.2.0
PyYAML>=3.10
toolz>=0.7.1
tornado>=3.1.0
# soft dependencies -- not required for bcbio-nextgen-vm
azure>=0.11.1
arrow>=0.4.4
awscli>=1.7.14
bioblend>=0.4.3
bcbreport>=0.99.18
{'fraction_non_alphanumeric': 0.2226027397260274, 'fraction_numerical': 0.16666666666666666, 'mean_word_length': 4.48125, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 47, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 2, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5029432', 'n_tokens_mistral': 494, 'n_tokens_neox': 467, 'n_words': 57}