<commit_before>#this resource bundle contains a property for each known commandline module

#modules with values set to true will be accessible
org.fhcrc.cpl.viewer.amt.commandline.AmtDatabaseCreatorCommandLineModule=true
org.fhcrc.cpl.viewer.amt.commandline.AmtDatabaseDiagnosticCommandLineModule=true
org.fhcrc.cpl.viewer.amt.commandline.AmtDatabaseManagerCommandLineModule=true
org.fhcrc.cpl.viewer.amt.commandline.AmtDatabaseMatcherCLM=true
org.fhcrc.cpl.viewer.amt.commandline.AmtLabeledQuantCLM=true
org.fhcrc.cpl.viewer.amt.commandline.CombineAmtMs2FilesCLM=true

org.fhcrc.cpl.viewer.qa.commandline.QAExperimentCLM=true
org.fhcrc.cpl.viewer.qa.commandline.QAProtXMLCLM=true

org.fhcrc.cpl.viewer.ms2.commandline.FlipPepXMLRatiosCLM=true

CalibrateMzxmlMassesCLM=true
CalibrateFeatureMassesCLM=true
ConvertFeatureFileCommandLineModule=true
DeconvoluteCommandLineModule=true
DumpWindow2DCommandLineModule=true
ExtractRunsFromPepXmlCommandLineModule=true
FeatureSetMatcherCommandLineModule=true
FindPeptidesCommandLineModule=true
FilterFeaturesCommandLineModule=true
FindSearchScoreCutoffForFARCLM=true
GuessProteinsFromFastaCLM=true
HydrophobicityAlgorithmAnalyzerCLM=true
IcatCommandLineModule=true
PeptideArrayAnalyzerCommandLineModule=true
PeptideArrayCommandLineModule=true
PeptideCompareCommandLineModule=true
PlotMassCalibrationCLM=true
PopulateMS2TimesCLM=true
Q3CommandLineModule=true
QuantCommandLineModule=true
RunCommandFileCommandLineModule=true
SaveMzxmlWindowCommandLineModule=true
SaveImageCommandLineModule=true
PostProcessPepXMLCLM=true
CorrectPrecursorMzCLM=true
PlotDeltaMassesCLM=true
ProtXmlCompareCLM=true
UserManualCLM=true

#PlotMs1Ms2ScanCountsCLM=true

   
#modules with values set to false will not be accessible
MassAccuracyCommandLineModule=false
org.fhcrc.cpl.viewer.mrm.MRMCommandLineModule=true<commit_msg>declaring PlotFeatureAttributesCLM so you can run it from viewerApp.jar<commit_after>#this resource bundle contains a property for each known commandline module

#modules with values set to true will be accessible
org.fhcrc.cpl.viewer.amt.commandline.AmtDatabaseCreatorCommandLineModule=true
org.fhcrc.cpl.viewer.amt.commandline.AmtDatabaseDiagnosticCommandLineModule=true
org.fhcrc.cpl.viewer.amt.commandline.AmtDatabaseManagerCommandLineModule=true
org.fhcrc.cpl.viewer.amt.commandline.AmtDatabaseMatcherCLM=true
org.fhcrc.cpl.viewer.amt.commandline.AmtLabeledQuantCLM=true
org.fhcrc.cpl.viewer.amt.commandline.CombineAmtMs2FilesCLM=true

org.fhcrc.cpl.viewer.qa.commandline.QAExperimentCLM=true
org.fhcrc.cpl.viewer.qa.commandline.QAProtXMLCLM=true

org.fhcrc.cpl.viewer.ms2.commandline.FlipPepXMLRatiosCLM=true

CalibrateMzxmlMassesCLM=true
CalibrateFeatureMassesCLM=true
ConvertFeatureFileCommandLineModule=true
DeconvoluteCommandLineModule=true
DumpWindow2DCommandLineModule=true
ExtractRunsFromPepXmlCommandLineModule=true
FeatureSetMatcherCommandLineModule=true
FindPeptidesCommandLineModule=true
FilterFeaturesCommandLineModule=true
FindSearchScoreCutoffForFARCLM=true
GuessProteinsFromFastaCLM=true
HydrophobicityAlgorithmAnalyzerCLM=true
IcatCommandLineModule=true
PeptideArrayAnalyzerCommandLineModule=true
PeptideArrayCommandLineModule=true
PeptideCompareCommandLineModule=true
PlotMassCalibrationCLM=true
PlotFeatureAttributesCLM=true
PopulateMS2TimesCLM=true
Q3CommandLineModule=true
QuantCommandLineModule=true
RunCommandFileCommandLineModule=true
SaveMzxmlWindowCommandLineModule=true
SaveImageCommandLineModule=true
PostProcessPepXMLCLM=true
CorrectPrecursorMzCLM=true
PlotDeltaMassesCLM=true
ProtXmlCompareCLM=true
UserManualCLM=true

#PlotMs1Ms2ScanCountsCLM=true

   
#modules with values set to false will not be accessible
MassAccuracyCommandLineModule=false
org.fhcrc.cpl.viewer.mrm.MRMCommandLineModule=true
{'fraction_non_alphanumeric': 0.056673728813559324, 'fraction_numerical': 0.003707627118644068, 'mean_word_length': 12.160278745644598, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 4}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6541643', 'n_tokens_mistral': 1289, 'n_tokens_neox': 1270, 'n_words': 148}