<commit_before>from setuptools import setup, find_packages

setup(
    name='ssbio',
    version='0.1',
    author='<NAME>',
    author_email='<EMAIL>',
    license='MIT',
    url='http://github.com/nmih/ssbio',
    description='Various tools and functions to enable structural systems biology',
    packages=find_packages(),
    package_dir={'ssbio': 'ssbio'},
    package_data={'ssbio': ['ssbio/etc/*']},
    scripts = ['ssbio/scripts/cleanpdb', 'ssbio/scripts/aggprop', 'ssbio/scripts/thermostability', 'ssbio/structure/mutatepdb.py', 'ssbio/structure/tleap.py',
               'ssbio/databases/drugbank.py', 'ssbio/structure/properties/msmsprops.py',
               'ssbio/dock/dock.py'],
    long_description=open('README.md').read(),
    install_requires=['biopython',
                      'numpy',
                      'tqdm',
                      'pandas',
                      'requests',
                      'cachetools',
                      'bioservices',
                      'prody']
)<commit_msg>Include xmltodict<commit_after>from setuptools import setup, find_packages

setup(
    name='ssbio',
    version='0.1',
    author='<NAME>',
    author_email='<EMAIL>',
    license='MIT',
    url='http://github.com/nmih/ssbio',
    description='Various tools and functions to enable structural systems biology',
    packages=find_packages(),
    package_dir={'ssbio': 'ssbio'},
    package_data={'ssbio': ['ssbio/etc/*']},
    scripts = ['ssbio/scripts/cleanpdb', 'ssbio/scripts/aggprop', 'ssbio/scripts/thermostability', 'ssbio/structure/mutatepdb.py', 'ssbio/structure/tleap.py',
               'ssbio/databases/drugbank.py', 'ssbio/structure/properties/msmsprops.py',
               'ssbio/dock/dock.py'],
    long_description=open('README.md').read(),
    install_requires=['biopython',
                      'numpy',
                      'tqdm',
                      'pandas',
                      'requests',
                      'cachetools',
                      'bioservices',
                      'prody',
                      'xmltodict']
)
{'fraction_non_alphanumeric': 0.15262397688974483, 'fraction_numerical': 0.0019258545979778526, 'mean_word_length': 2.1822358346094948, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 7, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4504063', 'n_tokens_mistral': 636, 'n_tokens_neox': 615, 'n_words': 90}