<commit_before><?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>org.bridgedb</groupId>
  <artifactId>bridgedb-bundle</artifactId>
  <packaging>pom</packaging>
  <version>2.4.0-SNAPSHOT</version>	
  <name>BridgeDb bundle</name>
	<description>
		BridgeDb is a framework for finding and mapping equivalent database
		identifiers. It has many facets: it is both a framework, live services,
		and are identifier mapping files for genes, proteins, and metabolites.
	</description>
	<url>http://www.bridgedb.org/</url>
  <inceptionYear>2006</inceptionYear>
  <modules>
  	<module>org.bridgedb</module>
  	<module>org.bridgedb.bio</module>
  	<module>org.bridgedb.gui</module>
  	<module>org.bridgedb.utils</module>
  	<module>org.bridgedb.sql</module>
  	<module>org.bridgedb.ws.core</module>
  	<module>org.bridgedb.ws.server</module>
  	<module>org.bridgedb.ws.client</module>
        <module>org.bridgedb.rdf</module>
        <module>org.bridgedb.uri.api</module>
        <module>org.bridgedb.uri.sql</module>
        <module>org.bridgedb.uri.loader</module>
        <module>org.bridgedb.uri.ws.core</module>
        <module>org.bridgedb.uri.ws.server</module>
        <module>org.bridgedb.uri.ws.client</module>
        <module>org.bridgedb.rdb</module>
  	<module>org.bridgedb.rdb.construct</module>
  	<module>org.bridgedb.server</module>
  	<module>org.bridgedb.webservice.bridgerest</module>
  	<module>org.bridgedb.webservice.biomart</module>
  	<module>org.bridgedb.webservice.picr</module>
  	<module>org.bridgedb.webservice.synergizer</module>
  	<module>org.bridgedb.tools.batchmapper</module>
        <module>org.bridgedb.tools.qc</module>
        <module>org.bridgedb.file.orthoxml</module>
  	<module>examples</module>
  </modules>
  
    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
        <commons-cli.version>1.2</commons-cli.version>
        <cxf.version>2.4.3</cxf.version>
        <hamcrest.version>1.3</hamcrest.version>
        <jersey.version>1.10</jersey.version>
        <log4j.version>1.2.16</log4j.version> <!-- Version used in MetaData -->
        <mysql.version>5.1.20</mysql.version>
        <netbeans.hint.deploy.server>Tomcat</netbeans.hint.deploy.server>
        <owlapi-api.version>3.4</owlapi-api.version>
        <sesame.version>2.7.1</sesame.version>
        <servlet.version>2.5</servlet.version>
        <slf4j.version>1.6.4</slf4j.version>
    </properties>
   
  	<build>
		<pluginManagement>
			<plugins>
				<plugin>
					<artifactId>maven-compiler-plugin</artifactId>
					<configuration>
						<source>1.6</source>
						<target>1.6</target>
					</configuration>
				</plugin>
			</plugins>
		</pluginManagement>
		<directory>target</directory>
		<outputDirectory>target/classes</outputDirectory>
		<finalName>${project.artifactId}-${project.version}</finalName>
		<testOutputDirectory>target/test-classes</testOutputDirectory>
		<sourceDirectory>src</sourceDirectory>
		<scriptSourceDirectory>scripts</scriptSourceDirectory>
		<testSourceDirectory>test</testSourceDirectory>
		<resources>
			<resource>
				<directory>resources</directory>
			</resource>
		</resources>
		<testResources>
			<testResource>
				<directory>test-data</directory>
			</testResource>
		</testResources>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>2.6</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>test-jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-source-plugin</artifactId>
            <version>2.4</version>
            <executions>
              <execution>
							 <id>attach-sources</id>
                <goals>
                  <goal>jar</goal>
                  <goal>test-jar</goal>
                </goals>
              </execution>
            </executions>
          </plugin>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-release-plugin</artifactId>
					<version>2.5.3</version>
					<configuration>
						<autoVersionSubmodules>true</autoVersionSubmodules>
						<tagNameFormat>release_@{project.version}</tagNameFormat>	
						<useReleaseProfile>true</useReleaseProfile>
						<releaseProfiles>release</releaseProfiles>
						<goals>deploy</goals>
					</configuration>
				</plugin>
        <plugin>
          <groupId>org.apache.maven.plugins</groupId>
          <artifactId>maven-surefire-plugin</artifactId>
          <version>2.22.1</version>
          <configuration>
            <testFailureIgnore>true</testFailureIgnore>
          </configuration>
        </plugin>
        </plugins>
	</build>
	<commit_msg>Does this one work??<commit_after><?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>org.bridgedb</groupId>
  <artifactId>bridgedb-bundle</artifactId>
  <packaging>pom</packaging>
  <version>2.4.0-SNAPSHOT</version>	
  <name>BridgeDb bundle</name>
	<description>
		BridgeDb is a framework for finding and mapping equivalent database
		identifiers. It has many facets: it is both a framework, live services,
		and are identifier mapping files for genes, proteins, and metabolites.
	</description>
	<url>http://www.bridgedb.org/</url>
  <inceptionYear>2006</inceptionYear>
  <modules>
  	<module>org.bridgedb</module>
  	<module>org.bridgedb.bio</module>
  	<module>org.bridgedb.gui</module>
  	<module>org.bridgedb.utils</module>
  	<module>org.bridgedb.sql</module>
  	<module>org.bridgedb.ws.core</module>
  	<module>org.bridgedb.ws.server</module>
  	<module>org.bridgedb.ws.client</module>
        <module>org.bridgedb.rdf</module>
        <module>org.bridgedb.uri.api</module>
        <module>org.bridgedb.uri.sql</module>
        <module>org.bridgedb.uri.loader</module>
        <module>org.bridgedb.uri.ws.core</module>
        <module>org.bridgedb.uri.ws.server</module>
        <module>org.bridgedb.uri.ws.client</module>
        <module>org.bridgedb.rdb</module>
  	<module>org.bridgedb.rdb.construct</module>
  	<module>org.bridgedb.server</module>
  	<module>org.bridgedb.webservice.bridgerest</module>
  	<module>org.bridgedb.webservice.biomart</module>
  	<module>org.bridgedb.webservice.picr</module>
  	<module>org.bridgedb.webservice.synergizer</module>
  	<module>org.bridgedb.tools.batchmapper</module>
        <module>org.bridgedb.tools.qc</module>
        <module>org.bridgedb.file.orthoxml</module>
  	<module>examples</module>
  </modules>
  
    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
        <commons-cli.version>1.2</commons-cli.version>
        <cxf.version>2.4.3</cxf.version>
        <hamcrest.version>1.3</hamcrest.version>
        <jersey.version>1.10</jersey.version>
        <log4j.version>1.2.16</log4j.version> <!-- Version used in MetaData -->
        <mysql.version>5.1.20</mysql.version>
        <netbeans.hint.deploy.server>Tomcat</netbeans.hint.deploy.server>
        <owlapi-api.version>3.4</owlapi-api.version>
        <sesame.version>2.7.1</sesame.version>
        <servlet.version>2.5</servlet.version>
        <slf4j.version>1.6.4</slf4j.version>
    </properties>
   
  	<build>
		<pluginManagement>
			<plugins>
				<plugin>
					<artifactId>maven-compiler-plugin</artifactId>
					<configuration>
						<source>1.6</source>
						<target>1.6</target>
					</configuration>
				</plugin>
			</plugins>
		</pluginManagement>
		<directory>target</directory>
		<outputDirectory>target/classes</outputDirectory>
		<finalName>${project.artifactId}-${project.version}</finalName>
		<testOutputDirectory>target/test-classes</testOutputDirectory>
		<sourceDirectory>src</sourceDirectory>
		<scriptSourceDirectory>scripts</scriptSourceDirectory>
		<testSourceDirectory>test</testSourceDirectory>
		<resources>
			<resource>
				<directory>resources</directory>
			</resource>
		</resources>
		<testResources>
			<testResource>
				<directory>test-data</directory>
			</testResource>
		</testResources>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>2.6</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>test-jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-source-plugin</artifactId>
            <version>2.4</version>
            <executions>
              <execution>
							 <id>attach-sources</id>
                <goals>
                  <goal>jar</goal>
                  <goal>test-jar</goal>
                </goals>
              </execution>
            </executions>
          </plugin>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-release-plugin</artifactId>
					<version>2.5.3</version>
					<configuration>
						<autoVersionSubmodules>true</autoVersionSubmodules>
						<tagNameFormat>release_@{project.version}</tagNameFormat>	
						<useReleaseProfile>true</useReleaseProfile>
						<releaseProfiles>release</releaseProfiles>
						<goals>deploy</goals>
					</configuration>
				</plugin>
        <plugin>
          <groupId>org.apache.maven.plugins</groupId>
          <artifactId>maven-surefire-plugin</artifactId>
          <version>2.22.0</version>
          <configuration>
            <testFailureIgnore>true</testFailureIgnore>
            <forkCount>3</forkCount>
            <reuseForks>true</reuseForks>
            <argLine>-Xmx1024m -XX:MaxPermSize=256m</argLine>
          </configuration>
        </plugin>
        </plugins>
	</build>
	
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{'dir': 'git-commits-cleaned', 'id': '6548323', 'n_tokens_mistral': 3894, 'n_tokens_neox': 3438, 'n_words': 359}