<commit_before>from setuptools import setup, find_packages

__author__ = "Knights Lab"
__copyright__ = "Copyright (c) 2016--, %s" % __author__
__credits__ = ["<NAME>", "<NAME>", "<NAME>", "<NAME>", "<NAME>"]
__email__ = "<EMAIL>"
__license__ = "AGPL"
__maintainer__ = "<NAME>"
__version__ = "0.0.1-dev"

long_description = ''

setup(
    name='shogun',
    version=__version__,
    packages=find_packages(),
    url='',
    license=__license__,
    author=__author__,
    author_email=__email__,
    description='',
    long_description=long_description,
    keywords='',
    install_requires=['Click'],
    entry_points={
        'console_scripts': [
            'shogun = shogun.__main__:cli'
        ]
    },
)

# scripts=glob(os.path.join('shogun', 'scripts', '*py')),

# 'shogun_bt2_align = shogun.scripts.shogun_bt2_align:shogun_bt2_align',
# 'shogun_bt2_db = shogun.scripts.shogun_bt2_db:shogun_bt2_db',
# 'shogun_bt2_lca = shogun.scripts.shogun_bt2_lca:shogun_bt2_lca',
# 'shogun_bt2_capitalist = shogun.scripts.shogun_bt2_capitalist:shogun_bt2_capitalist',
# 'shogun_utree_db = shogun.scripts.shogun_utree_db:shogun_utree_db',
# 'shogun_utree_lca = shogun.scripts.shogun_utree_lca:shogun_utree_lca',
# 'shogun_utree_capitalist = shogun.scripts.shogun_utree_capitalist:shogun_utree_capitalist',
# 'shogun_utree_functional = shogun.scripts.shogun_utree_functional:shogun_utree_functional',
# 'shogun_bugbase = shogun.scripts.shogun_bugbase:shogun_bugbase',
# 'extract_genome_lengths = shogun.scripts.extract_genome_lengths:extract_genome_lengths',
# 'kegg_predictions = shogun.scripts.kegg_predictions:main',
# 'kegg_mapping_extract_img_id = shogun.scripts.kegg_mapping_extract_img_id:main',
# 'kegg_parse_img_ids = shogun.scripts.kegg_parse_img_ids:main',<commit_msg>Updated the setup for installation.<commit_after>from setuptools import setup

__author__ = "Knights Lab"
__copyright__ = "Copyright (c) 2016--, %s" % __author__
__credits__ = ["<NAME>", "<NAME>", "<NAME>", "<NAME>", "<NAME>"]
__email__ = "<EMAIL>"
__license__ = "AGPL"
__maintainer__ = "<NAME>"
__version__ = "0.0.1-dev0"

long_description = ''

setup(
    name='shogun',
    version=__version__,
    packages=["shogun"],
    url='',
    license=__license__,
    author=__author__,
    author_email=__email__,
    description='',
    long_description=long_description,
    keywords='',
    install_requires=['Click'],
    entry_points={
        'console_scripts': [
            'shogun = shogun.__main__:cli'
        ]
    },
    extras_require={
        'test': ['pytest', 'pytest-cov'],
        'demo': ['jupyter', 'jupyter_client', 'ipython'],
        'doc': ['sphinx'],
    },
)

# scripts=glob(os.path.join('shogun', 'scripts', '*py')),

# 'shogun_bt2_align = shogun.scripts.shogun_bt2_align:shogun_bt2_align',
# 'shogun_bt2_db = shogun.scripts.shogun_bt2_db:shogun_bt2_db',
# 'shogun_bt2_lca = shogun.scripts.shogun_bt2_lca:shogun_bt2_lca',
# 'shogun_bt2_capitalist = shogun.scripts.shogun_bt2_capitalist:shogun_bt2_capitalist',
# 'shogun_utree_db = shogun.scripts.shogun_utree_db:shogun_utree_db',
# 'shogun_utree_lca = shogun.scripts.shogun_utree_lca:shogun_utree_lca',
# 'shogun_utree_capitalist = shogun.scripts.shogun_utree_capitalist:shogun_utree_capitalist',
# 'shogun_utree_functional = shogun.scripts.shogun_utree_functional:shogun_utree_functional',
# 'shogun_bugbase = shogun.scripts.shogun_bugbase:shogun_bugbase',
# 'extract_genome_lengths = shogun.scripts.extract_genome_lengths:extract_genome_lengths',
# 'kegg_predictions = shogun.scripts.kegg_predictions:main',
# 'kegg_mapping_extract_img_id = shogun.scripts.kegg_mapping_extract_img_id:main',
# 'kegg_parse_img_ids = shogun.scripts.kegg_parse_img_ids:main',
{'fraction_non_alphanumeric': 0.14023732470334413, 'fraction_numerical': 0.010517799352750809, 'mean_word_length': 6.174081237911025, 'pattern_counts': {'":': 0, '<': 17, '<?xml version=': 0, '>': 17, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4831566', 'n_tokens_mistral': 1526, 'n_tokens_neox': 1485, 'n_words': 160}