<commit_before>class Sratoolkit < Formula
  desc "Data tools for INSDC Sequence Read Archive"
  homepage "https://github.com/ncbi/sra-tools"
  url "https://github.com/ncbi/sra-tools/archive/2.9.2.tar.gz"
  sha256 "e055091ee1c0b8163c6e470d24e11575884a3c7e829759be38d2239366c3cf3b"
  revision 1
  head "https://github.com/ncbi/sra-tools.git"

  bottle do
    cellar :any
    sha256 "506e6115cfb2cf9404b9db86525d6a4393ad1f530e1b0404c9f4a8b7e723615b" => :high_sierra
    sha256 "197a1f8040d8aa1fe968e96abb895be04e75174aab5eae45dad7a74070b5f8db" => :sierra
    sha256 "abd6309f2f03e81b67b6d27ef25bdf5cb506bdad19aa2895f86ee77674dfd5eb" => :el_capitan
  end

  depends_on "hdf5"
  depends_on "libmagic"

  resource "ngs-sdk" do
    url "https://github.com/ncbi/ngs/archive/2.9.2.tar.gz"
    sha256 "ac559009b2021f56bbfaea680c8207f1608637435136277dad9796516be0385a"
  end

  resource "ncbi-vdb" do
    url "https://github.com/ncbi/ncbi-vdb/archive/2.9.2.tar.gz"
    sha256 "7db26cc71f7742e693ba8cff8b06fefd2244f42bda4dba4ab315aaea9b9194f0"
  end

  def install
    # sratoolkit seems to have race conditions during the build and exhibit
    # during pacbio util builds
    # Issue: https://github.com/Linuxbrew/homebrew-core/issues/5323
    ENV.deparallelize unless OS.mac?

    ngs_sdk_prefix = buildpath/"ngs-sdk-prefix"<commit_msg>sratoolkit: update 2.9.2_1 bottle for Linuxbrew.<commit_after>class Sratoolkit < Formula
  desc "Data tools for INSDC Sequence Read Archive"
  homepage "https://github.com/ncbi/sra-tools"
  url "https://github.com/ncbi/sra-tools/archive/2.9.2.tar.gz"
  sha256 "e055091ee1c0b8163c6e470d24e11575884a3c7e829759be38d2239366c3cf3b"
  revision 1
  head "https://github.com/ncbi/sra-tools.git"

  bottle do
    cellar :any
    sha256 "506e6115cfb2cf9404b9db86525d6a4393ad1f530e1b0404c9f4a8b7e723615b" => :high_sierra
    sha256 "197a1f8040d8aa1fe968e96abb895be04e75174aab5eae45dad7a74070b5f8db" => :sierra
    sha256 "abd6309f2f03e81b67b6d27ef25bdf5cb506bdad19aa2895f86ee77674dfd5eb" => :el_capitan
    sha256 "32f8ba13eecac8d7adcecb7e103744853ce88ee0e4cf594655bd8f7db0c3c44b" => :x86_64_linux
  end

  depends_on "hdf5"
  depends_on "libmagic"

  resource "ngs-sdk" do
    url "https://github.com/ncbi/ngs/archive/2.9.2.tar.gz"
    sha256 "ac559009b2021f56bbfaea680c8207f1608637435136277dad9796516be0385a"
  end

  resource "ncbi-vdb" do
    url "https://github.com/ncbi/ncbi-vdb/archive/2.9.2.tar.gz"
    sha256 "7db26cc71f7742e693ba8cff8b06fefd2244f42bda4dba4ab315aaea9b9194f0"
  end

  def install
    # sratoolkit seems to have race conditions during the build and exhibit
    # during pacbio util builds
    # Issue: https://github.com/Linuxbrew/homebrew-core/issues/5323
    ENV.deparallelize unless OS.mac?

    ngs_sdk_prefix = buildpath/"ngs-sdk-prefix"
{'fraction_non_alphanumeric': 0.0916606757728253, 'fraction_numerical': 0.2092020129403307, 'mean_word_length': 4.6680244399185336, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 10, 'https://': 12, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2185521', 'n_tokens_mistral': 1551, 'n_tokens_neox': 1238, 'n_words': 165}