<commit_before>{% set name = "ont-tombo" %}
{% set version = "1.3" %}
{% set hash = "40a7e681fad9fca6dd78aa6c8e944012dae8464bb0879cd0d0e6c5505da08d89" %}

package:
  name: {{ name|lower }}
  version: {{ version }}

source:
  url: https://github.com/nanoporetech/tombo/archive/{{ version }}.tar.gz
  sha256: {{ hash }}

build:
  entry_points:
    - tombo = tombo.__main__:main
  number: 1

requirements:
  host:
    - python
    - setuptools >=18.0
    - h5py <=2.7.0
    - rpy2  # [py3k]
    - rpy2 <=2.8.6  # [not py3k]
    - numpy
    - scipy
    - cython
    - r-base
    - r-ggplot2
    - r-gridextra
    - mappy >=2.10
    - pyfaidx
    - future
    - tqdm

  run:
    - python
    - setuptools >=18.0
    - h5py <=2.7.0
    - rpy2  # [py3k]
    - rpy2 <=2.8.6  # [not py3k]
    - numpy
    - scipy
    - cython
    - r-base
    - r-ggplot2
    - r-gridextra
    - mappy >=2.10
    - pyfaidx
    - future
    - tqdm

test:
  imports:
    - tombo

  commands:
    - tombo --help

about:
  home: https://nanoporetech.github.io/tombo/
  license: mpl-2.0
  license_file: LICENSE.md
  summary: 'Detection of modified bases from raw nanopore sequencing data.'<commit_msg>Updated ont-tombo to version 1.4. (#10182)<commit_after>{% set name = "ont-tombo" %}
{% set version = "1.4" %}
{% set hash = "af478a046156e8644fbf458191da18e2757fd71ac91d645c13cd5a3b5006c695" %}

package:
  name: {{ name|lower }}
  version: {{ version }}

source:
  url: https://github.com/nanoporetech/tombo/archive/{{ version }}.tar.gz
  sha256: {{ hash }}

build:
  entry_points:
    - tombo = tombo.__main__:main
  number: 0

requirements:
  host:
    - python
    - setuptools >=18.0
    - h5py
    - rpy2  # [py3k]
    - rpy2 <=2.8.6  # [not py3k]
    - numpy
    - scipy
    - cython
    - r-base
    - r-ggplot2
    - r-gridextra
    - mappy >=2.10
    - pyfaidx
    - future
    - tqdm

  run:
    - python
    - h5py
    - rpy2  # [py3k]
    - rpy2 <=2.8.6  # [not py3k]
    - numpy
    - scipy
    - cython
    - r-base
    - r-ggplot2
    - r-gridextra
    - mappy >=2.10
    - pyfaidx
    - future
    - tqdm

test:
  imports:
    - tombo

  commands:
    - tombo --help

about:
  home: https://nanoporetech.github.io/tombo/
  license: mpl-2.0
  license_file: LICENSE.md
  summary: 'Detection of modified bases from raw nanopore sequencing data.'

extras:
  identifiers:
    - doi:https://doi.org/10.1101/094672 # bioarxiv preprint
{'fraction_non_alphanumeric': 0.14333057166528584, 'fraction_numerical': 0.07373653686826843, 'mean_word_length': 1.9925650557620818, 'pattern_counts': {'":': 0, '<': 9, '<?xml version=': 0, '>': 10, 'https://': 5, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4909672', 'n_tokens_mistral': 1119, 'n_tokens_neox': 1028, 'n_words': 201}