<commit_before>{% set version = "0.5" %}
{% set sha256 = "7de4bc30db4bd39c6661ad56cf1613c03fcc6cff89bfe141f883423a99890ea9" %}

package:
  name: microhapulator
  version: '{{version}}'

source:
  url: https://github.com/bioforensics/MicroHapulator/archive/{{ version }}.tar.gz
  sha256: '{{sha256}}'

build:
  noarch: python
  entry_points:
    - mhpl8r = microhapulator.cli:main
  script: python -m pip install --no-deps --ignore-installed .
  number: 1

requirements:
  host:
    - python >=3
    - pip
  run:
    - bwa >=0.7.17
    - flash >=1.2
    - happer >=0.1
    - insilicoseq >=1.3.6
    - jsonschema >=3.1
    - numpy >=1.15.4
    - pandas >=1.0
    - python >=3
    - pysam >=0.15.2
    - samtools >=1.12
    - termgraph >=0.5

test:
  imports:
    - microhapulator<commit_msg>[ci skip] Merge PR 34552<commit_after>{% set version = "0.6.1" %}
{% set sha256 = "d4cee1975eaf64dca6d39b1e005efa495c0e59d3a19f3ad58d37e13a6bf27f08" %}

package:
  name: microhapulator
  version: '{{version}}'

source:
  url: https://github.com/bioforensics/MicroHapulator/archive/{{ version }}.tar.gz
  sha256: '{{sha256}}'

build:
  noarch: python
  entry_points:
    - mhpl8r = microhapulator.cli:main
  script: python -m pip install --no-deps --ignore-installed .
  number: 0

requirements:
  host:
    - python >=3
    - pip
  run:
    - biopython ==1.78
    - bwa >=0.7.17
    - fastqc >=0.11.9
    - flash >=1.2
    - happer >=0.1
    - insilicoseq >=1.3.6
    - jsonschema >=3.1
    - matplotlib-base >=3.0
    - numpy >=1.15.4
    - pandas >=1.0
    - python >=3
    - pysam >=0.15.2
    - scipy >=1.7
    - samtools >=1.12
    - snakemake >=6.0
    - termgraph >=0.5
    - tqdm >=4.0

test:
  imports:
    - microhapulator
{'fraction_non_alphanumeric': 0.1609529343404997, 'fraction_numerical': 0.10400929692039512, 'mean_word_length': 2.4166666666666665, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 32, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6518148', 'n_tokens_mistral': 816, 'n_tokens_neox': 736, 'n_words': 145}