<commit_before><metadata xml:lang="en"><Esri><CreaDate>20130402</CreaDate><CreaTime>13322400</CreaTime><ArcGISFormat>1.0</ArcGISFormat><SyncOnce>TRUE</SyncOnce><scaleRange><minScale>150000000</minScale><maxScale>5000</maxScale></scaleRange><ArcGISProfile>ItemDescription</ArcGISProfile><ModDate>20140620</ModDate><ModTime>19181000</ModTime></Esri><dataIdInfo><idCitation><resTitle>Export to GenAlex_CodominantData</resTitle></idCitation><idAbs>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN&gt;Exports spatially referenced genetic data from a Feature Class to a text file formatted for use in GenAlEx (Peakall and Smouse 2006, 2012), an MS Excel Add-In created to run various genetic analyses in Excel. &lt;/SPAN&gt;&lt;/P&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN&gt;For more information on GenAlEx go to: http://biology. anu.edu.au/GenAlEx&lt;/SPAN&gt;&lt;SPAN /&gt;&lt;/P&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Required Inputs: &lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;An exisitng Feature Class with spatially referenced genetic data (e.g., co-dominant microsatellite data)&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;An Identification Field, which distinguishes unique individuals or observations for analysis.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Population Field from the attribute table that can be used to organize the data by distinct populations or groupings&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A File Path and File Name for the Output Text File &lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Optional Inputs:&lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Where Clause option to identify and select only those Feature Class records with genetic data &lt;/SPAN&gt;&lt;SPAN&gt;NOTE: If your data only contains genetic records, this parameter can be left blank.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Outputs:&lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Text File formatted to meet the input file format for GenAlEx for co-dominante data&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;UL STYLE="margin:0 0 0 0;padding:0 0 0 0;"&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;NOTE: This tool currently works for codominant data such as microsatellies.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</idAbs><idCredit>Created by the geneGIS team: <NAME>, <NAME>, <NAME>, <NAME></idCredit><searchKeys><keyword>export</keyword><keyword>genetics</keyword><keyword>spatial</keyword><keyword>codiminant</keyword></searchKeys></dataIdInfo><distInfo><distributor><distorFormat><formatName>ArcToolbox Tool</formatName></distorFormat></distributor></distInfo><tool displayname="Export to GenAlex_CodominantData" name="ExportGenAlEx" toolboxalias="genegis" xmlns=""><parameters><param datatype="Feature Layer" direction="Input" displayname="Input Feature Class" expression="Input_Feature_Class" name="Input_Feature_Class" type="Required"><dialogReference>&lt;DIV
        STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;Select
        a Feature Class containing spatially reference genetic
        data.&lt;/SPAN&gt;&lt;/P&gt;&lt;P&gt;&lt;SPAN
        /&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param><param name="Primary_Identification_Field" displayname="Primary Identification Field" type="Required" direction="Input" datatype="String" expression="Primary_Identification_Field"><dialogReference>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;The identification column used to determine which observations are unique. In many studies, this will be the Individual ID, but could also be sample ID or other unique criteria.&lt;/SPAN&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param><param datatype="SQL Expression" direction="Output" displayname="Where Clause" expression="{Where_Clause}" name="Where_Clause" type="Optional"><dialogReference>&lt;DIV
        STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;If
        the feature class contains spatially referenced data that
        are not genetic, use the Where Clause to select only those
        records containing genetic data.
        &lt;/SPAN&gt;&lt;/P&gt;&lt;P&gt;&lt;SPAN
        /&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param><param datatype="Field" direction="Input" displayname="Population Field" expression="Population Field" name="Population Field" type="Required"><dialogReference>&lt;DIV
        STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;Select
        a field from the attribute table that can be used to sort
        the data by popualtion or
        grouping.&lt;/SPAN&gt;&lt;/P&gt;&lt;P&gt;&lt;SPAN&gt;For
        example, select the field 'Region' to sort the data by the
        region from where each sample was collected (e.g. SEAK,
        CentAM, Hawaii,
        etc.).&lt;/SPAN&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param><param datatype="File" direction="Output" displayname="Output File" expression="Output_File" name="Output_File" type="Required"><dialogReference>&lt;DIV
        STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;Provide
        a file path and file name for the Output Text
        File.&lt;/SPAN&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param></parameters><summary>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN&gt;Exports spatially referenced genetic data from a Feature Class to a text file formatted for use in GenAlEx (Peakall and Smouse 2006, 2012), an MS Excel Add-In created to run various genetic analyses in Excel. &lt;/SPAN&gt;&lt;/P&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN&gt;For more information on GenAlEx go to: http://biology. anu.edu.au/GenAlEx&lt;/SPAN&gt;&lt;SPAN /&gt;&lt;/P&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Required Inputs: &lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;An exisitng Feature Class with spatially referenced genetic data (e.g., co-dominant microsatellite data)&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;An Identification Field, which distinguishes unique individuals or observations for analysis.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Population Field from the attribute table that can be used to organize the data by distinct populations or groupings&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A File Path and File Name for the Output Text File &lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Optional Inputs:&lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Where Clause option to identify and select only those Feature Class records with genetic data &lt;/SPAN&gt;&lt;SPAN&gt;NOTE: If your data only contains genetic records, this parameter can be left blank.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Outputs:&lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Text File formatted to meet the input file format for GenAlEx for co-dominante data&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;UL STYLE="margin:0 0 0 0;padding:0 0 0 0;"&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;NOTE: This tool currently works for codominant data such as microsatellies.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</summary><usage>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;Exports spataily reference genetic data to a text file formatted for input into GenAlEx.&lt;/SPAN&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</usage><arcToolboxHelpPath>c:\apps\arcgis\desktop10.2\Help\gp</arcToolboxHelpPath></tool><mdHrLv><ScopeCd value="005"/></mdHrLv></metadata><commit_msg>Updates to the ExportGenAlEx tool help. Updates to #20<commit_after><?xml version="1.0"?>
<metadata xml:lang="en"><Esri><CreaDate>20130402</CreaDate><CreaTime>13322400</CreaTime><ArcGISFormat>1.0</ArcGISFormat><SyncOnce>TRUE</SyncOnce><scaleRange><minScale>150000000</minScale><maxScale>5000</maxScale></scaleRange><ArcGISProfile>ItemDescription</ArcGISProfile><ModDate>20140624</ModDate><ModTime>100732</ModTime></Esri><dataIdInfo><idCitation><resTitle>Export to GenAlex_CodominantData</resTitle></idCitation><idAbs>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN&gt;Exports spatially referenced genetic data from a Feature Class to a text file formatted for use in GenAlEx (Peakall and Smouse 2006, 2012), an MS Excel Add-In created to run various genetic analyses in Excel. &lt;/SPAN&gt;&lt;/P&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN&gt;For more information go to the &lt;/SPAN&gt;&lt;A href="http://biology.anu.edu.au/GenAlEx"&gt;&lt;SPAN&gt;GenAlEx&lt;/SPAN&gt;&lt;/A&gt;&lt;SPAN&gt; website (http://biology.anu.edu.au/GenAlEx).&lt;/SPAN&gt;&lt;SPAN /&gt;&lt;/P&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Required Inputs: &lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;An exisitng Feature Class with spatially referenced genetic data (e.g., co-dominant microsatellite data)&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;An Identification Field, which distinguishes unique individuals or observations for analysis.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Population Field from the attribute table that can be used to organize the data by distinct populations or groupings&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A File Path and File Name for the Output Text File &lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Optional Inputs:&lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Where Clause option to identify and select only those Feature Class records with genetic data &lt;/SPAN&gt;&lt;SPAN&gt;NOTE: If your data only contains genetic records, this parameter can be left blank.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Outputs:&lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Text File formatted to meet the input file format for GenAlEx for co-dominante data&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;UL STYLE="margin:0 0 0 0;padding:0 0 0 0;"&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;NOTE: This tool currently works for codominant data such as microsatellies.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</idAbs><idCredit>Created by the geneGIS team: <NAME>, <NAME>, <NAME>, <NAME></idCredit><searchKeys><keyword>export</keyword><keyword>genetics</keyword><keyword>spatial</keyword><keyword>co-dominant</keyword></searchKeys></dataIdInfo><distInfo><distributor><distorFormat><formatName>ArcToolbox Tool</formatName></distorFormat></distributor></distInfo><tool displayname="Export to GenAlex_CodominantData" name="ExportGenAlEx" toolboxalias="genegis" xmlns=""><parameters><param datatype="Feature Layer" direction="Input" displayname="Input Feature Class" expression="Input_Feature_Class" name="Input_Feature_Class" type="Required"><dialogReference>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;Select a Feature Class containing spatially reference genetic data.&lt;/SPAN&gt;&lt;/P&gt;&lt;P&gt;&lt;SPAN /&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param><param name="Primary_Identification_Field" displayname="Primary Identification Field" type="Required" direction="Input" datatype="String" expression="Primary_Identification_Field"><dialogReference>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;The identification column used to determine which observations are unique. In many studies, this will be the Individual ID, but could also be sample ID or other unique criteria.&lt;/SPAN&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param><param datatype="SQL Expression" direction="Output" displayname="Where Clause" expression="{Where_Clause}" name="Where_Clause" type="Optional"><dialogReference>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;If the feature class contains spatially referenced data that are not genetic, use the Where Clause to select only those records containing genetic data. &lt;/SPAN&gt;&lt;/P&gt;&lt;P&gt;&lt;SPAN /&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param><param datatype="Field" direction="Input" displayname="Population Field" expression="Population Field" name="Population Field" type="Required"><dialogReference>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;Select a field from the attribute table that can be used to sort the data by popualtion or grouping.&lt;/SPAN&gt;&lt;/P&gt;&lt;P&gt;&lt;SPAN&gt;For example, select the field 'Region' to sort the data by the region from where each sample was collected (e.g. SEAK, CentAM, Hawaii, etc.).&lt;/SPAN&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param><param datatype="File" direction="Output" displayname="Output File" expression="Output_File" name="Output_File" type="Required"><dialogReference>&lt;DIV
        STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;Provide
        a file path and file name for the Output Text
        File.&lt;/SPAN&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</dialogReference></param></parameters><summary>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN&gt;Exports spatially referenced genetic data from a Feature Class to a text file formatted for use in GenAlEx (Peakall and Smouse 2006, 2012), an MS Excel Add-In created to run various genetic analyses in Excel. &lt;/SPAN&gt;&lt;/P&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN&gt;For more information go to the &lt;/SPAN&gt;&lt;A href="http://biology.anu.edu.au/GenAlEx"&gt;&lt;SPAN&gt;GenAlEx&lt;/SPAN&gt;&lt;/A&gt;&lt;SPAN&gt; website (http://biology.anu.edu.au/GenAlEx).&lt;/SPAN&gt;&lt;SPAN /&gt;&lt;/P&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Required Inputs: &lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;An exisitng Feature Class with spatially referenced genetic data (e.g., co-dominant microsatellite data)&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;An Identification Field, which distinguishes unique individuals or observations for analysis.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Population Field from the attribute table that can be used to organize the data by distinct populations or groupings&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A File Path and File Name for the Output Text File &lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Optional Inputs:&lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Where Clause option to identify and select only those Feature Class records with genetic data &lt;/SPAN&gt;&lt;SPAN&gt;NOTE: If your data only contains genetic records, this parameter can be left blank.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;P STYLE="margin:0 0 7 0;"&gt;&lt;SPAN STYLE="font-weight:bold;"&gt;Outputs:&lt;/SPAN&gt;&lt;/P&gt;&lt;UL&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;A Text File formatted to meet the input file format for GenAlEx for co-dominante data&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;UL STYLE="margin:0 0 0 0;padding:0 0 0 0;"&gt;&lt;LI&gt;&lt;P&gt;&lt;SPAN&gt;NOTE: This tool currently works for codominant data such as microsatellies.&lt;/SPAN&gt;&lt;/P&gt;&lt;/LI&gt;&lt;/UL&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</summary><usage>&lt;DIV STYLE="text-align:Left;"&gt;&lt;DIV&gt;&lt;DIV&gt;&lt;P&gt;&lt;SPAN&gt;Exports spatially referenced genetic data to a text file formatted for input into GenAlEx.&lt;/SPAN&gt;&lt;/P&gt;&lt;/DIV&gt;&lt;/DIV&gt;&lt;/DIV&gt;</usage><arcToolboxHelpPath>c:\apps\arcgis\desktop10.2\Help\gp</arcToolboxHelpPath></tool><mdHrLv><ScopeCd value="005"/></mdHrLv></metadata>
{'fraction_non_alphanumeric': 0.19730458221024258, 'fraction_numerical': 0.01509433962264151, 'mean_word_length': 8.343033016228315, 'pattern_counts': {'":': 0, '<': 182, '<?xml version=': 1, '>': 182, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 5}, 'pii_count': 0, 'substrings_counts': 2, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3621842', 'n_tokens_mistral': 6445, 'n_tokens_neox': 5944, 'n_words': 1131}