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		<h1>[name]</h1>

		Here we present a few images introducing NGL's capabilities to create complex molecular views and to interactively display large biological complexes.

		<h2>2014</h2>

		<table>
			<tr class="image">
				<td>
					<img src="../../images/1blu_small.png" />
				</td>
				<td>
					<img src="../../images/norovirus_small.png" />
				</td>
			</tr>
			<tr class="caption">
				<td>
					<i>Ferredoxin</i> structure (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1blu">1BLU</a>) depicted by the secondary structure (cartoon representations) and highlighting the two [4Fe-4S] clusters (HyperBall representation)
				</td>
				<td>
					Structure of the <i>Noro virus</i> capsid (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1ihm">1IHM</a>) that forms the outer shell of the virus. The front of the capsid is clipped away and inside the virus capsid is, for size comparision, the structure of a conserved retroviral RNA packaging element from the <i>Moloney murine leukemia virus</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=2lif">2LIF</a>).
				</td>
			</tr>

			<tr class="image">
				<td>
					<img src="../../images/3j3y_small.png" />
				</td>
				<td>
					<img src="../../images/3pqr_small.png" />
				</td>
			</tr>
			<tr class="caption">
				<td>
					<i>HIV-1</i> capsid structure (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=3j3y">3J3Y</a>) showing the backbone colored by chain name.
				</td>
				<td>
					Structure of light-activated <i>rhodopsin</i> in complex with a peptide derived from the C-terminus of <i>transducin</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=3pqr">3PQR</a>).
				</td>
			</tr>

			<tr class="image">
				<td>
					<img src="../../images/1d66_small.png" />
				</td>
				<td>
					<img src="../../images/ribosome_small.png" />
				</td>
			</tr>
			<tr class="caption">
				<td>
					Structure of a DNA/protein complex (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1d66">1D66</a>).
				</td>
				<td>
					Structure of a mammalian 80S <i>ribosome</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=4ujd">4UJD</a>).
				</td>
			</tr>

			<tr class="image">
				<td>
					<img src="../../images/gact_small.png" />
				</td>
				<td>
					<img src="../../images/1crn_small.png" />
				</td>
			</tr>
			<tr class="caption">
				<td>
					System of a peptide derived from the C-terminus of <i>transducin</i> (blue cartoon) surrounded by a box of water molecules (spacefill representation) in preparation for a molecular dynamics simulation.
				</td>
				<td>
					Structure of <i>crambin</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1crn">1CRN</a>) highlighting the three disulfide bridges labeled by residue number.
				</td>
			</tr>

			<tr class="image">
				<td>
					<img src="../../images/rope_small.png" />
				</td>
				<td>
					<!-- <img src="../../images/1crn_small.png" /> -->
				</td>
			</tr>
			<tr class="caption">
				<td>
					Example usage of the rope representation (solid tube) to display the protein fold more abstract than with the cartoon representation (translucent). Shown is the structure of <i>crambin</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1crn">1CRN</a>) colored by secondary structure with magenta alpha-helices and yellow beta-strands.
				</td>
				<td>
					<!-- Structure of <i>crambin</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1crn">1CRN</a>) highlighting the three disulfide bridges labeled by residue number. -->
				</td>
			</tr>

		</table>

	</body>
</html><commit_msg>DOC: gallery images link to larger versions<commit_after><!DOCTYPE html>
<html lang="en">
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		<script src="../../list.js"></script>
		<script src="../../page.js"></script>
		<link type="text/css" rel="stylesheet" href="../../page.css" />
		<style>

			td {
				width: 400px;
			}

			img {
				margin: 3em 0em 1em 0em;
			}

			.image {
				text-align:center;
			}

			.caption {
				vertical-align:text-top;
			}

		</style>
	</head>
	<body>
		<h1>[name]</h1>

		Here we present a few images introducing NGL's capabilities to create complex molecular views and to interactively display large biological complexes.

		<h2>2014</h2>

		<table>
			<tr class="image">
				<td>
					<a href="../../images/1blu.png" target="_blank"><img src="../../images/1blu_small.png" /></a>
				</td>
				<td>
					<a href="../../images/norovirus.png" target="_blank"><img src="../../images/norovirus_small.png" /></a>
				</td>
			</tr>
			<tr class="caption">
				<td>
					<i>Ferredoxin</i> structure (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1blu">1BLU</a>) depicted by the secondary structure (cartoon representations) and highlighting the two [4Fe-4S] clusters (HyperBall representation)
				</td>
				<td>
					Structure of the <i>Noro virus</i> capsid (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1ihm">1IHM</a>) that forms the outer shell of the virus. The front of the capsid is clipped away and inside the virus capsid is, for size comparision, the structure of a conserved retroviral RNA packaging element from the <i>Moloney murine leukemia virus</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=2lif">2LIF</a>).
				</td>
			</tr>

			<tr class="image">
				<td>
					<a href="../../images/3j3y.png" target="_blank"><img src="../../images/3j3y_small.png" /></a>
				</td>
				<td>
					<a href="../../images/3pqr.png" target="_blank"><img src="../../images/3pqr_small.png" /></a>
				</td>
			</tr>
			<tr class="caption">
				<td>
					<i>HIV-1</i> capsid structure (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=3j3y">3J3Y</a>) showing the backbone colored by chain name.
				</td>
				<td>
					Structure of light-activated <i>rhodopsin</i> in complex with a peptide derived from the C-terminus of <i>transducin</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=3pqr">3PQR</a>).
				</td>
			</tr>

			<tr class="image">
				<td>
					<a href="../../images/1d66.png" target="_blank"><img src="../../images/1d66_small.png" /></a>
				</td>
				<td>
					<a href="../../images/ribosome.png" target="_blank"><img src="../../images/ribosome_small.png" /></a>
				</td>
			</tr>
			<tr class="caption">
				<td>
					Structure of a DNA/protein complex (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1d66">1D66</a>).
				</td>
				<td>
					Structure of a mammalian 80S <i>ribosome</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=4ujd">4UJD</a>).
				</td>
			</tr>

			<tr class="image">
				<td>
					<a href="../../images/gact.png" target="_blank"><img src="../../images/gact_small.png" /></a>
				</td>
				<td>
					<a href="../../images/1crn.png" target="_blank"><img src="../../images/1crn_small.png" /></a>
				</td>
			</tr>
			<tr class="caption">
				<td>
					System of a peptide derived from the C-terminus of <i>transducin</i> (blue cartoon) surrounded by a box of water molecules (spacefill representation) in preparation for a molecular dynamics simulation.
				</td>
				<td>
					Structure of <i>crambin</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1crn">1CRN</a>) highlighting the three disulfide bridges labeled by residue number.
				</td>
			</tr>

			<tr class="image">
				<td>
					<a href="../../images/rope.png" target="_blank"><img src="../../images/rope_small.png" /></a>
				</td>
				<td>
					<a href="../../images/1crn.png" target="_blank"><!-- <img src="../../images/1crn_small.png" /></a> -->
				</td>
			</tr>
			<tr class="caption">
				<td>
					Example usage of the rope representation (solid tube) to display the protein fold more abstract than with the cartoon representation (translucent). Shown is the structure of <i>crambin</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1crn">1CRN</a>) colored by secondary structure with magenta alpha-helices and yellow beta-strands.
				</td>
				<td>
					<!-- Structure of <i>crambin</i> (PDB entry <a href="http://www.rcsb.org/pdb/explore.do?structureId=1crn">1CRN</a>) highlighting the three disulfide bridges labeled by residue number. -->
				</td>
			</tr>

		</table>

	</body>
</html>
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