<commit_before>#############################################################################
# This file includes all the basic run-time defines for Avida.
# For more information, see doc/config.html
#############################################################################

VERSION_ID 2.14.0   # Do not change this value.

### GENERAL_GROUP ###
# General Settings
VERBOSITY 1       # 0 = No output at all
                  # 1 = Normal output
                  # 2 = Verbose output, detailing progress
                  # 3 = High level of details, as available
                  # 4 = Print Debug Information, as applicable
RANDOM_SEED 0     # Random number seed (0 for based on time)
SPECULATIVE 1     # Enable speculative execution
                  # (pre-execute instructions that don't affect other organisms)
POPULATION_CAP 0  # Carrying capacity in number of organisms (use 0 for no cap)
POP_CAP_ELDEST 0  # Carrying capacity in number of organisms (use 0 for no cap). 
                  # Will kill oldest organism in population, but still use birth method to place new offspring.

### TOPOLOGY_GROUP ###
# World topology
WORLD_X 60                  # Width of the Avida world
WORLD_Y 60                  # Height of the Avida world
WORLD_GEOMETRY 2            # 1 = Bounded Grid (WOLRD_X x WORLD_Y)
                            # 2 = Toroidal Grid (WOLRD_X x WORLD_Y; wraps at edges
                            # 3 = Clique (all population cells are connected)
                            # 4 = Hexagonal grid
                            # 5 = Partial
                            # 6 = 3D Lattice (under development)
                            # 7 = Random connected
                            # 8 = Scale-free (detailed below)
SCALE_FREE_M 3              # Number of connections per cell in a scale-free geometry
SCALE_FREE_ALPHA 1.0        # Attachment power (1=linear)
SCALE_FREE_ZERO_APPEAL 0.0  # Appeal of cells with zero connections

### CONFIG_FILE_GROUP ###
# Other configuration Files
DATA_DIR data                     # Directory in which config files are found
EVENT_FILE events.cfg             # File containing list of events during run
ANALYZE_FILE analyze.cfg          # File used for analysis mode
ENVIRONMENT_FILE environment.cfg  # File that describes the environment

#include INST_SET=instset-heads.cfg

### MUTATION_GROUP ###
# Mutation rates
COPY_MUT_PROB 0.0025          # Mutation rate (per copy)
COPY_INS_PROB 0.0             # Insertion rate (per copy)
COPY_DEL_PROB 0.0             # Deletion rate (per copy)
COPY_UNIFORM_PROB 0.0         # Uniform mutation probability (per copy)
                              # - Randomly apply insertion, deletion or point mutation
COPY_SLIP_PROB 0.0            # Slip rate (per copy)
POINT_MUT_PROB 0.0            # Mutation rate (per-location per update)
DIV_MUT_PROB 0.0              # Mutation rate (per site, applied on divide)
DIV_INS_PROB 0.0              # Insertion rate (per site, applied on divide)
DIV_DEL_PROB 0.0              # Deletion rate (per site, applied on divide)
DIV_UNIFORM_PROB 0.0          # Uniform mutation probability (per site, applied on divide)
                              # - Randomly apply insertion, deletion or point mutation
DIV_SLIP_PROB 0.0             # Slip rate (per site, applied on divide)
DIVIDE_MUT_PROB 0.0           # Mutation rate (max one, per divide)
DIVIDE_INS_PROB 0.05          # Insertion rate (max one, per divide)
DIVIDE_DEL_PROB 0.05          # Deletion rate (max one, per divide)
DIVIDE_UNIFORM_PROB 0.0       # Uniform mutation probability (per divide)<commit_msg>change corresponding files in avida_complex.cfg<commit_after>#############################################################################
# This file includes all the basic run-time defines for Avida.
# For more information, see doc/config.html
#############################################################################

VERSION_ID 2.14.0   # Do not change this value.

### GENERAL_GROUP ###
# General Settings
VERBOSITY 1       # 0 = No output at all
                  # 1 = Normal output
                  # 2 = Verbose output, detailing progress
                  # 3 = High level of details, as available
                  # 4 = Print Debug Information, as applicable
RANDOM_SEED 0     # Random number seed (0 for based on time)
SPECULATIVE 1     # Enable speculative execution
                  # (pre-execute instructions that don't affect other organisms)
POPULATION_CAP 0  # Carrying capacity in number of organisms (use 0 for no cap)
POP_CAP_ELDEST 0  # Carrying capacity in number of organisms (use 0 for no cap). 
                  # Will kill oldest organism in population, but still use birth method to place new offspring.

### TOPOLOGY_GROUP ###
# World topology
WORLD_X 60                  # Width of the Avida world
WORLD_Y 60                  # Height of the Avida world
WORLD_GEOMETRY 2            # 1 = Bounded Grid (WOLRD_X x WORLD_Y)
                            # 2 = Toroidal Grid (WOLRD_X x WORLD_Y; wraps at edges
                            # 3 = Clique (all population cells are connected)
                            # 4 = Hexagonal grid
                            # 5 = Partial
                            # 6 = 3D Lattice (under development)
                            # 7 = Random connected
                            # 8 = Scale-free (detailed below)
SCALE_FREE_M 3              # Number of connections per cell in a scale-free geometry
SCALE_FREE_ALPHA 1.0        # Attachment power (1=linear)
SCALE_FREE_ZERO_APPEAL 0.0  # Appeal of cells with zero connections

### CONFIG_FILE_GROUP ###
# Other configuration Files
DATA_DIR data                     # Directory in which config files are found
EVENT_FILE events_complex.cfg             # File containing list of events during run
ANALYZE_FILE analyze_complex.cfg          # File used for analysis mode
ENVIRONMENT_FILE environment_complex.cfg  # File that describes the environment

#include INST_SET=instset-heads.cfg

### MUTATION_GROUP ###
# Mutation rates
COPY_MUT_PROB 0.0025          # Mutation rate (per copy)
COPY_INS_PROB 0.0             # Insertion rate (per copy)
COPY_DEL_PROB 0.0             # Deletion rate (per copy)
COPY_UNIFORM_PROB 0.0         # Uniform mutation probability (per copy)
                              # - Randomly apply insertion, deletion or point mutation
COPY_SLIP_PROB 0.0            # Slip rate (per copy)
POINT_MUT_PROB 0.0            # Mutation rate (per-location per update)
DIV_MUT_PROB 0.0              # Mutation rate (per site, applied on divide)
DIV_INS_PROB 0.0              # Insertion rate (per site, applied on divide)
DIV_DEL_PROB 0.0              # Deletion rate (per site, applied on divide)
DIV_UNIFORM_PROB 0.0          # Uniform mutation probability (per site, applied on divide)
                              # - Randomly apply insertion, deletion or point mutation
DIV_SLIP_PROB 0.0             # Slip rate (per site, applied on divide)
DIVIDE_MUT_PROB 0.0           # Mutation rate (max one, per divide)
DIVIDE_INS_PROB 0.05          # Insertion rate (max one, per divide)
DIVIDE_DEL_PROB 0.05          # Deletion rate (max one, per divide)
DIVIDE_UNIFORM_PROB 0.0       # Uniform mutation probability (per divide)
{'fraction_non_alphanumeric': 0.0969738651994498, 'fraction_numerical': 0.019807427785419534, 'mean_word_length': 2.194639718804921, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 18, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1868814', 'n_tokens_mistral': 2146, 'n_tokens_neox': 1900, 'n_words': 741}