<commit_before>[build-system]
build-backend = 'setuptools.build_meta:__legacy__'
# Minimum requirements for the build system to execute.
# See current numpy pinning in https://github.com/scipy/oldest-supported-numpy
requires = [
    "setuptools>=40.8.0",
    "wheel",
    "Cython>=0.29.16",  # Note: sync with setup.py
    "oldest-supported-numpy",
    "scipy>=0.19.1",
    "versioneer-518",
]
# Uncommenting this requires adding the top level of the repo to sys.path in the setup.py
# so that it can find the vendorized copy of versioneer. I see that other projects don't
# always include this (pandas, numpy, etc), so leaving this off for now
# build-backend = "setuptools.build_meta"

[tool.black]
line-length = 132
skip-string-normalization = true
include = '\.pyi?$'
exclude = '''
(
    /(
        asv_bench/env
      | \.egg
      | \.git
      | \.hg
      | \.mypy_cache
      | \.nox
      | \.tox
      | \.venv
      | _build
      | buck-out
      | build
      | dist
      | docs
      | doc
     )/ | (
      setup.py
      | versioneer.py
      | _version.py
     )
)
'''
<commit_msg>added mdtraj to setup requirements<commit_after>[build-system]
build-backend = 'setuptools.build_meta:__legacy__'
# Minimum requirements for the build system to execute.
# See current numpy pinning in https://github.com/scipy/oldest-supported-numpy
requires = [
    "setuptools>=40.8.0",
    "wheel",
    "Cython>=0.29.16",  # Note: sync with setup.py
    "oldest-supported-numpy",
    "scipy>=0.19.1",
    "versioneer-518",
    "mdtraj >= 1.9.5"
]
# Uncommenting this requires adding the top level of the repo to sys.path in the setup.py
# so that it can find the vendorized copy of versioneer. I see that other projects don't
# always include this (pandas, numpy, etc), so leaving this off for now
# build-backend = "setuptools.build_meta"

[tool.black]
line-length = 132
skip-string-normalization = true
include = '\.pyi?$'
exclude = '''
(
    /(
        asv_bench/env
      | \.egg
      | \.git
      | \.hg
      | \.mypy_cache
      | \.nox
      | \.tox
      | \.venv
      | _build
      | buck-out
      | build
      | dist
      | docs
      | doc
     )/ | (
      setup.py
      | versioneer.py
      | _version.py
     )
)
'''

{'fraction_non_alphanumeric': 0.13196611680784665, 'fraction_numerical': 0.018279090503789567, 'mean_word_length': 2.280701754385965, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 10, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2679641', 'n_tokens_mistral': 829, 'n_tokens_neox': 775, 'n_words': 202}