<commit_before>---
cpan:
  # VEP dependencies
  - Encode::Locale
  - Statistics::Descriptive
  - Archive::Extract
  - Archive::Zip
  - Archive::Tar
  - Compress::Raw::Zlib
  - DBI
  - LWP::Simple
  - LWP::Protocol::https
  - Time::HiRes
  - IPC::Cmd
  - IPC::System::Simple
  - Params::Check
  - Module::Load::Conditional
  - Archive::Tar
  - File::Fetch
  - File::ShareDir
  - File::ShareDir::Install
  # Sanger Cancer library dependencies
  - Bio::DB::Sam;--config lddlflags=-shared;SAMTOOLS={system_install}/share/samtools-0.1
  - Vcf==0.953==https://github.com/chapmanb/vcftools-cpan/archive/v0.953.tar.gz
  #- Sanger::CGP::Vcf==1.2.3==https://github.com/cancerit/cgpVcf/archive/v1.2.3.tar.gz
  #- Sanger::CGP::AlleleCount==2.1.0==https://github.com/cancerit/alleleCount/archive/v2.1.0.tar.gz==build=perl
  #- PCAP==1.8.1==https://github.com/ICGC-TCGA-PanCancer/PCAP-core/archive/v1.8.1.tar.gz==depremove=GD
  #- Sanger::CGP::Battenberg==1.3.2_06==https://github.com/cancerit/cgpBattenberg/archive/8b45fee.tar.gz==build=perl
<commit_msg>Bump Battenberg dependency with latest set of fixes<commit_after>---
cpan:
  # VEP dependencies
  - Encode::Locale
  - Statistics::Descriptive
  - Archive::Extract
  - Archive::Zip
  - Archive::Tar
  - Compress::Raw::Zlib
  - DBI
  - LWP::Simple
  - LWP::Protocol::https
  - Time::HiRes
  - IPC::Cmd
  - IPC::System::Simple
  - Params::Check
  - Module::Load::Conditional
  - Archive::Tar
  - File::Fetch
  - File::ShareDir
  - File::ShareDir::Install
  # Sanger Cancer library dependencies
  - Bio::DB::Sam;--config lddlflags=-shared;SAMTOOLS={system_install}/share/samtools-0.1
  - Vcf==0.953==https://github.com/chapmanb/vcftools-cpan/archive/v0.953.tar.gz
  #- Sanger::CGP::Vcf==1.2.3==https://github.com/cancerit/cgpVcf/archive/v1.2.3.tar.gz
  #- Sanger::CGP::AlleleCount==2.1.0==https://github.com/cancerit/alleleCount/archive/v2.1.0.tar.gz==build=perl
  #- PCAP==1.8.1==https://github.com/ICGC-TCGA-PanCancer/PCAP-core/archive/v1.8.1.tar.gz==depremove=GD
  #- Sanger::CGP::Battenberg==1.3.2_07==https://github.com/cancerit/cgpBattenberg/archive/92cd3a2.tar.gz==build=perl

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