<commit_before># Generated by jeweler
# DO NOT EDIT THIS FILE DIRECTLY
# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
# -*- encoding: utf-8 -*-

Gem::Specification.new do |s|
  s.name = %q{bio-core}
  s.version = "0.0.0"

  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
  s.authors = ["<NAME>"]
  s.date = %q{2011-08-06}
  s.description = %q{Bioruby core plugins}
  s.email = %q{<EMAIL>}
  s.extra_rdoc_files = [
    "LICENSE.txt",
    "README.rdoc"
  ]
  s.files = [
    ".document",
    "Gemfile",
    "Gemfile.lock",
    "LICENSE.txt",
    "README.rdoc",
    "Rakefile",
    "VERSION",
    "bio-core.gemspec"
  ]
  s.homepage = %q{http://github.com/helios/bioruby-core}
  s.licenses = ["MIT"]
  s.require_paths = ["lib"]
  s.rubygems_version = %q{1.5.0}
  s.summary = %q{BioRuby core plugins, most and stable plugins. BlastXMLParser, BWA, SamTools}

  if s.respond_to? :specification_version then
    s.specification_version = 3

    if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
      s.add_development_dependency(%q<shoulda>, [">= 0"])
      s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
      s.add_development_dependency(%q<jeweler>, ["~> 1.6.0"])
      s.add_development_dependency(%q<rcov>, [">= 0"])
      s.add_development_dependency(%q<bio>, [">= 1.4.1"])
      s.add_runtime_dependency(%q<bio>, ["= 1.4.1"])
      s.add_runtime_dependency(%q<bio-assembly>, ["= 0.1.0"])
      s.add_runtime_dependency(%q<bio-gff3>, ["= 0.8.7"])
      s.add_runtime_dependency(%q<bio-logger>, ["= 1.0.0"])
      s.add_runtime_dependency(%q<intermine-bio>, ["= 0.98.1"])
      s.add_runtime_dependency(%q<ruby-ensembl-api>, ["= 1.0.1"])
      s.add_runtime_dependency(%q<bio-ucsc-api>, ["= 0.1.0"])
    else
      s.add_dependency(%q<shoulda>, [">= 0"])
      s.add_dependency(%q<bundler>, ["~> 1.0.0"])
      s.add_dependency(%q<jeweler>, ["~> 1.6.0"])
      s.add_dependency(%q<rcov>, [">= 0"])
      s.add_dependency(%q<bio>, [">= 1.4.1"])
      s.add_dependency(%q<bio>, ["= 1.4.1"])
      s.add_dependency(%q<bio-assembly>, ["= 0.1.0"])
      s.add_dependency(%q<bio-gff3>, ["= 0.8.7"])
      s.add_dependency(%q<bio-logger>, ["= 1.0.0"])
      s.add_dependency(%q<intermine-bio>, ["= 0.98.1"])
      s.add_dependency(%q<ruby-ensembl-api>, ["= 1.0.1"])
      s.add_dependency(%q<bio-ucsc-api>, ["= 0.1.0"])
    end
  else
    s.add_dependency(%q<shoulda>, [">= 0"])
    s.add_dependency(%q<bundler>, ["~> 1.0.0"])
    s.add_dependency(%q<jeweler>, ["~> 1.6.0"])
    s.add_dependency(%q<rcov>, [">= 0"])
    s.add_dependency(%q<bio>, [">= 1.4.1"])
    s.add_dependency(%q<bio>, ["= 1.4.1"])
    s.add_dependency(%q<bio-assembly>, ["= 0.1.0"])
    s.add_dependency(%q<bio-gff3>, ["= 0.8.7"])
    s.add_dependency(%q<bio-logger>, ["= 1.0.0"])
    s.add_dependency(%q<intermine-bio>, ["= 0.98.1"])
    s.add_dependency(%q<ruby-ensembl-api>, ["= 1.0.1"])
    s.add_dependency(%q<bio-ucsc-api>, ["= 0.1.0"])
  end
end
<commit_msg>update gemspec to bio 1.4.2<commit_after># Generated by jeweler
# DO NOT EDIT THIS FILE DIRECTLY
# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
# -*- encoding: utf-8 -*-

Gem::Specification.new do |s|
  s.name = %q{bio-core}
  s.version = "0.0.0"

  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
  s.authors = ["<NAME>"]
  s.date = %q{2011-08-30}
  s.description = %q{Bioruby core plugins}
  s.email = %q{<EMAIL>}
  s.extra_rdoc_files = [
    "LICENSE.txt",
    "README.rdoc"
  ]
  s.files = [
    ".document",
    "Gemfile",
    "Gemfile.lock",
    "LICENSE.txt",
    "README.rdoc",
    "Rakefile",
    "VERSION",
    "bio-core.gemspec"
  ]
  s.homepage = %q{http://github.com/helios/bioruby-core}
  s.licenses = ["MIT"]
  s.require_paths = ["lib"]
  s.rubygems_version = %q{1.5.0}
  s.summary = %q{BioRuby core plugins, most and stable plugins. BlastXMLParser, BWA, SamTools}

  if s.respond_to? :specification_version then
    s.specification_version = 3

    if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
      s.add_development_dependency(%q<shoulda>, [">= 0"])
      s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
      s.add_development_dependency(%q<jeweler>, ["~> 1.6.0"])
      s.add_development_dependency(%q<rcov>, [">= 0"])
      s.add_development_dependency(%q<bio>, [">= 1.4.1"])
      s.add_runtime_dependency(%q<bio>, ["= 1.4.2"])
      s.add_runtime_dependency(%q<bio-assembly>, ["= 0.1.0"])
      s.add_runtime_dependency(%q<bio-gff3>, ["= 0.8.7"])
      s.add_runtime_dependency(%q<bio-logger>, ["= 1.0.0"])
      s.add_runtime_dependency(%q<intermine-bio>, ["= 0.98.1"])
      s.add_runtime_dependency(%q<ruby-ensembl-api>, ["= 1.0.1"])
      s.add_runtime_dependency(%q<bio-ucsc-api>, ["= 0.1.0"])
    else
      s.add_dependency(%q<shoulda>, [">= 0"])
      s.add_dependency(%q<bundler>, ["~> 1.0.0"])
      s.add_dependency(%q<jeweler>, ["~> 1.6.0"])
      s.add_dependency(%q<rcov>, [">= 0"])
      s.add_dependency(%q<bio>, [">= 1.4.1"])
      s.add_dependency(%q<bio>, ["= 1.4.2"])
      s.add_dependency(%q<bio-assembly>, ["= 0.1.0"])
      s.add_dependency(%q<bio-gff3>, ["= 0.8.7"])
      s.add_dependency(%q<bio-logger>, ["= 1.0.0"])
      s.add_dependency(%q<intermine-bio>, ["= 0.98.1"])
      s.add_dependency(%q<ruby-ensembl-api>, ["= 1.0.1"])
      s.add_dependency(%q<bio-ucsc-api>, ["= 0.1.0"])
    end
  else
    s.add_dependency(%q<shoulda>, [">= 0"])
    s.add_dependency(%q<bundler>, ["~> 1.0.0"])
    s.add_dependency(%q<jeweler>, ["~> 1.6.0"])
    s.add_dependency(%q<rcov>, [">= 0"])
    s.add_dependency(%q<bio>, [">= 1.4.1"])
    s.add_dependency(%q<bio>, ["= 1.4.2"])
    s.add_dependency(%q<bio-assembly>, ["= 0.1.0"])
    s.add_dependency(%q<bio-gff3>, ["= 0.8.7"])
    s.add_dependency(%q<bio-logger>, ["= 1.0.0"])
    s.add_dependency(%q<intermine-bio>, ["= 0.98.1"])
    s.add_dependency(%q<ruby-ensembl-api>, ["= 1.0.1"])
    s.add_dependency(%q<bio-ucsc-api>, ["= 0.1.0"])
  end
end

{'fraction_non_alphanumeric': 0.23651315789473684, 'fraction_numerical': 0.040625, 'mean_word_length': 3.4289876183539696, 'pattern_counts': {'":': 0, '<': 79, '<?xml version=': 0, '>': 113, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2434617', 'n_tokens_mistral': 2739, 'n_tokens_neox': 2541, 'n_words': 328}