<commit_before>server.base.url=http://localhost:8080

# Session timeout in seconds (1800 = 30 minutes)
session.max.timeout=240

mail.server.host=YOUR_MAIL_HOST
mail.server.protocol=YOUR_MAIL_PROTOCOL (usually SMTP)
mail.server.email=YOUR_MAIL_SOURCE (the address the mail is coming from)
mail.server.username=YOUR_MAIL_NAME (the name that the e-mail is coming from)

ngsarchive.linker.available=true
ngsarchive.linker.script=ngsArchiveLinker.pl

# How often the subscription emails are sent out
irida.scheduled.subscription.cron=0 0 0 * * *

# url of updates file
updates.file=/etc/irida/updates.md

ncbi.upload.host=localhost
ncbi.upload.user=test
ncbi.upload.password=<PASSWORD>
ncbi.upload.port=21
ncbi.upload.baseDirectory=/home/test
ncbi.upload.namespace=IRIDA

ncbi.upload.controlKeepAliveTimeoutSeconds=300
ncbi.upload.controlKeepAliveReplyTimeoutMilliseconds=2000

irida.administrative.notifications.email=ADMIN_EMAIL

irida.scheduled.threads=2<commit_msg>This should not have been commited.<commit_after>server.base.url=http://localhost:8080

# Session timeout in seconds (1800 = 30 minutes)
session.max.timeout=1800

mail.server.host=YOUR_MAIL_HOST
mail.server.protocol=YOUR_MAIL_PROTOCOL (usually SMTP)
mail.server.email=YOUR_MAIL_SOURCE (the address the mail is coming from)
mail.server.username=YOUR_MAIL_NAME (the name that the e-mail is coming from)

ngsarchive.linker.available=true
ngsarchive.linker.script=ngsArchiveLinker.pl

# How often the subscription emails are sent out
irida.scheduled.subscription.cron=0 0 0 * * *

# url of updates file
updates.file=/etc/irida/updates.md

ncbi.upload.host=localhost
ncbi.upload.user=test
ncbi.upload.password=<PASSWORD>
ncbi.upload.port=21
ncbi.upload.baseDirectory=/home/test
ncbi.upload.namespace=IRIDA

ncbi.upload.controlKeepAliveTimeoutSeconds=300
ncbi.upload.controlKeepAliveReplyTimeoutMilliseconds=2000

irida.administrative.notifications.email=ADMIN_EMAIL

irida.scheduled.threads=2
{'fraction_non_alphanumeric': 0.09584828293182983, 'fraction_numerical': 0.02716555612506407, 'mean_word_length': 6.654901960784314, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2129700', 'n_tokens_mistral': 722, 'n_tokens_neox': 646, 'n_words': 120}