<commit_before>TO DO FOR V1
=================================================

* discrete samplers (Matt)
  - Gibbs for small outcome sets
  - slice for larger outcome sets
  - what about multinomial with constraints?

* remaining doc
  - reference manual (Bob)
 - API doc (Daniel, Bob)
    + stan/gm
    + stan/math
    + stan/mcmc
    + stan/memory
    + stan/meta
    + stan/model
    + stan/prob
  - add acknowledgements section
    + <NAME>

* distribution engineering (Daniel)
 - basic distro site

* speed tests relative to BUGS/JAGS

* disallow variable declarations ending with "__"
 

BUGS MODELS
=================================================

./vol3/fire/fire.stan.0
./vol2/schools/schools.stan.0
--- it takes NUTS too long to adapt / sample. 

./vol3/funshapes/hsquare.stan.0
./vol3/funshapes/ring.stan.0
./vol3/funshapes/squaremc.stan.0
--- the sampler hangs. 

./vol3/jama/jama.stan.0
./vol2/ice/vanilla_ice.stan.0
./vol2/ice/pineapple_ice.stan.0
--- we could not specify the joint posterior as BUGS 
specifies the model with circles in terms of DAG, which is 
not supported by JAGS either.  (Note that JAGS does not 
support all functionality of OpenBUGS). 

./vol2/asia/asia.stan.0
./vol2/t_df/estdof2.stan.0
./vol2/biopsies/biopsies.stan.0<commit_msg>added BUGS model state to to-do list<commit_after>TO DO FOR V1
=================================================

* discrete samplers (Matt)
  - Gibbs for small outcome sets
  - slice for larger outcome sets
  - what about multinomial with constraints?

* remaining doc
  - reference manual (Bob)
  - API manual (Bob)
  - API Doxygen doc (Daniel, Bob)
    + stan/gm
    + stan/math
    + stan/mcmc
    + stan/memory
    + stan/meta
    + stan/model
    + stan/prob
  - add acknowledgements section
    + <NAME>

* distribution engineering (Daniel)
 - basic distro site

* speed tests relative to BUGS/JAGS


BUGS MODELS
=================================================

./vol3/fire/fire.stan.0
./vol2/schools/schools.stan.0
--- it takes NUTS too long to adapt / sample. 

./vol3/funshapes/hsquare.stan.0
./vol3/funshapes/ring.stan.0
./vol3/funshapes/squaremc.stan.0
--- the sampler hangs. 

./vol3/jama/jama.stan.0
./vol2/ice/vanilla_ice.stan.0
./vol2/ice/pineapple_ice.stan.0
--- we could not specify the joint posterior as BUGS 
specifies the model with circles in terms of DAG, which is 
not supported by JAGS either.  (Note that JAGS does not 
support all functionality of OpenBUGS). 

./vol2/asia/asia.stan.0
./vol2/t_df/estdof2.stan.0
./vol2/biopsies/biopsies.stan.0
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