<commit_before><tool id="bigwig_to_bedgraph" name="BigWig to BedGraph" version="377+galaxy0">
    <description>converter</description>
    <requirements>
        <requirement type="package" version="377=h446ed27_4">ucsc-bigwigtobedgraph</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" level="fatal" description="Tool exception" />
    </stdio>
    <command detect_errors="exit_code"><![CDATA[
        bigWigToBedGraph $input $output
    ]]></command>
    <inputs>
        <param name="input" format="bigwig" type="data" label="BigWig file to convert" />
    </inputs>
    <outputs>
        <data format="bedgraph" name="output" label="Convert ${on_string} in BedGraph" />
    </outputs>
    <tests>
        <test>
	    <param name="input" value="1.bigwig" />
	    <output name="output" file="1.bedgraph" />	  
        </test>
     </tests>
     <help><![CDATA[

bigWigToBedGraph - Convert from bigWig to bedGraph format.

usage : bigWigToBedGraph in.bigWig out.bedGraph

    ]]></help>
    <citations>
        <citation type="doi">10.1093/bioinformatics/btq351</citation>
    </citations>
</tool>
<commit_msg>Update bigwigtobedgraph.xml<commit_after><tool id="bigwig_to_bedgraph" name="BigWig to BedGraph" version="377+galaxy0">
    <description>converter</description>
    <requirements>
        <requirement type="package" version="357">ucsc-bigwigtobedgraph</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" level="fatal" description="Tool exception" />
    </stdio>
    <command detect_errors="exit_code"><![CDATA[
        bigWigToBedGraph $input $output
    ]]></command>
    <inputs>
        <param name="input" format="bigwig" type="data" label="BigWig file to convert" />
    </inputs>
    <outputs>
        <data format="bedgraph" name="output" label="Convert ${on_string} in BedGraph" />
    </outputs>
    <tests>
        <test>
	    <param name="input" value="1.bigwig" />
	    <output name="output" file="1.bedgraph" />	  
        </test>
     </tests>
     <help><![CDATA[

bigWigToBedGraph - Convert from bigWig to bedGraph format.

usage : bigWigToBedGraph in.bigWig out.bedGraph

    ]]></help>
    <citations>
        <citation type="doi">10.1093/bioinformatics/btq351</citation>
    </citations>
</tool>

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{'dir': 'git-commits-cleaned', 'id': '4255216', 'n_tokens_mistral': 800, 'n_tokens_neox': 741, 'n_words': 145}