<commit_before>---
layout: mauvepage
---
### Mauve version history

#### Version 2.3.1 (2009-11-11)

##### New features:
+ Compatibility with older versions of Mac OS X 
##### Bugs fixed:
+ SNP output now handles mixed case sequence files and gap characters
+ Aligner memory usage has been streamlined, resulting in reduced memory requirements for alignments with many genomes
+ Fix for bug that prevented reordering GenBank-format draft genomes on the command-line
+ Fixed a crash when generating mums
+ Report an error when sequences containing gaps are used as input
+ Remove extra newlines in the ortholog alignment output
+ Fixed an OpenJDK rectangle drawing bug

#### Version 2.3.0 (2009-06-16)

##### Major new features:
+ Reordering contigs of draft genomes, published as Rissman et al 2009
+ Export a list of Single Nucleotide Polymorphisms present in an alignment (thanks to <NAME> for the suggestion)
+ Export a file listing the genome arrangement as a signed permutation
+ Export a list of positionally orthologous CDS, tRNAs, or misc_RNAs (thanks to <NAME> for the suggestion)
+ Export a file containing alignments of orthologous CDS, including alignments of unannotated regions predicted to be orthologous (thanks to <NAME> for the idea)

##### Other new features:
+ On Linux it is now possible to launch Mauve from outside the Mauve directory (thx Dongying Wu)<commit_msg>formatting fix<commit_after>---
layout: mauvepage
---
### Mauve version history

#### Version 2.3.1 (2009-11-11)

##### New features:
+ Compatibility with older versions of Mac OS X 

##### Bugs fixed:
+ SNP output now handles mixed case sequence files and gap characters
+ Aligner memory usage has been streamlined, resulting in reduced memory requirements for alignments with many genomes
+ Fix for bug that prevented reordering GenBank-format draft genomes on the command-line
+ Fixed a crash when generating mums
+ Report an error when sequences containing gaps are used as input
+ Remove extra newlines in the ortholog alignment output
+ Fixed an OpenJDK rectangle drawing bug

#### Version 2.3.0 (2009-06-16)

##### Major new features:
+ Reordering contigs of draft genomes, published as Rissman et al 2009
+ Export a list of Single Nucleotide Polymorphisms present in an alignment (thanks to <NAME> for the suggestion)
+ Export a file listing the genome arrangement as a signed permutation
+ Export a list of positionally orthologous CDS, tRNAs, or misc_RNAs (thanks to <NAME> for the suggestion)
+ Export a file containing alignments of orthologous CDS, including alignments of unannotated regions predicted to be orthologous (thanks to <NAME> for the idea)

##### Other new features:
+ On Linux it is now possible to launch Mauve from outside the Mauve directory (thx D<NAME>)
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