<commit_before># -*- coding: utf-8 -*-
# Copyright 2013 Novo Nordisk Foundation Center for Biosustainability,
# Technical University of Denmark.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

from __future__ import absolute_import, print_function

from setuptools import setup, find_packages
import os

on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
if on_rtd:
    requirements = []
else:
    requirements = [
        'cameo>=0.5',
        'sympy>=0.7.5',
        'cobra==0.4.0b2',
        'ipython>=3.0',
        'pyzmq>=14.5'
    ]

setup(
    name='driven',
    version="0.0.1b1",
    packages=find_packages(),
    install_requires=requirements,
    include_package_data=True,
    author='<NAME>',
    author_email='<EMAIL>',
    description='driven - data-driven constraint-based analysis',
    license='Apache License Version 2.0',
    keywords='biology metabolism bioinformatics high-throughput',
    url='TBD',
    long_description="A package for data driven modeling and analysis. It implements novel and state-of-the-art methods"
                     " to integrate 'omics' data in genome-scale methods.",
    classifiers=[
        'Development Status :: 1 - Planning',
        'Topic :: Utilities',
        'Programming Language :: Python :: 2.6',
        'Programming Language :: Python :: 2.7',
        'Programming Language :: Python :: 3.4',<commit_msg>Doc requirements<commit_after># -*- coding: utf-8 -*-
# Copyright 2013 Novo Nordisk Foundation Center for Biosustainability,
# Technical University of Denmark.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

from __future__ import absolute_import, print_function

from setuptools import setup, find_packages
import os

on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
if on_rtd:
    requirements = ["numpydoc>=0.5"]
else:
    requirements = [
        'cameo>=0.5',
        'sympy>=0.7.5',
        'cobra==0.4.0b2',
        'ipython>=3.0',
        'pyzmq>=14.5'
    ]

setup(
    name='driven',
    version="0.0.1b1",
    packages=find_packages(),
    install_requires=requirements,
    include_package_data=True,
    author='<NAME>',
    author_email='<EMAIL>',
    description='driven - data-driven constraint-based analysis',
    license='Apache License Version 2.0',
    keywords='biology metabolism bioinformatics high-throughput',
    url='TBD',
    long_description="A package for data driven modeling and analysis. It implements novel and state-of-the-art methods"
                     " to integrate 'omics' data in genome-scale methods.",
    classifiers=[
        'Development Status :: 1 - Planning',
        'Topic :: Utilities',
        'Programming Language :: Python :: 2.6',
        'Programming Language :: Python :: 2.7',
        'Programming Language :: Python :: 3.4',
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{'dir': 'git-commits-cleaned', 'id': '2025514', 'n_tokens_mistral': 1103, 'n_tokens_neox': 1061, 'n_words': 361}