<commit_before># Makefile for automating the counting and fitting of 21-mers from fastq files from SRA
# The target all counts 21-mers for all the 

FASTQFILES = $(wildcard *.fastq)
HISTFILES = $(subst .fastq,.fastq.21,$(FASTQFILES))
FITFILES  = $(subst .fastq,.fastq.21.fit.csv,$(FASTQFILES))

.PRECIOUS: %.21

all: $(FITFILES)
        echo $(FITFILES)

countall: $(HISTFILES)
        echo $(HISTFILES)

%.fastq.21: %.fastq
#       echo create $@ from $<
        countkmer21.sh $<

%.21.fit.csv : %.21
#       echo create $@ from $<
        -kmerspectrumanalyzer.py $< -n 30 -q<commit_msg>PRECIOUS<commit_after># Makefile for automating the counting and fitting of 21-mers from fastq files from SRA
# The target all counts 21-mers for all the 

FASTQFILES = $(wildcard *.fastq)
HISTFILES = $(subst .fastq,.fastq.21,$(FASTQFILES))
FITFILES  = $(subst .fastq,.fastq.21.fit.csv,$(FASTQFILES))

.SECONDARY: %.21

all: $(FITFILES)
        echo $(FITFILES)

countall: $(HISTFILES)
        echo $(HISTFILES)

%.fastq.21: %.fastq
#       echo create $@ from $<
        countkmer21.sh $<

%.21.fit.csv : %.21
#       echo create $@ from $<
        -kmerspectrumanalyzer.py $< -n 30 -q
{'fraction_non_alphanumeric': 0.15136054421768708, 'fraction_numerical': 0.034013605442176874, 'mean_word_length': 3.0170648464163823, 'pattern_counts': {'":': 0, '<': 11, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '12304', 'n_tokens_mistral': 495, 'n_tokens_neox': 431, 'n_words': 113}