<commit_before># Change Log

All notable changes to this project will be documented in this file. This
project adheres to [Semantic Versioning](http://semver.org/).

## [v0.3.0] - date

### Added

  * Support for assembler benchmark bioboxes was added to `biobox run` and
    `biobox verify` allowing the use of images such as bioboxes/quast.

  * The `biobox login` was allowing a user to log into a bash prompt in the
    specified image with test data volumes mounted. This feature was added to
    help interactive debugging when creating a biobox.

  * The `biobox verify` command now returns the reason for the failed
    verification. A flag `--verbose` can be used to list the PASS/FAIL status
    for all the verifications explicitly.

  * Containers are automatically removed by default after being run. This saves
    space on the users system by no longer keeping redundant containers around.
    An additional flag `--no-rm` was added to override this and keep
    the container after use.

### Fixed

  * Fixed bug where passing full paths as the input arguments would cause a
    crash. Full paths can now be given.

  * Fixed a bug where trying to validate a non-existent Docker image returned a
    verification failure message to the use instead of correctly informing the
    user the image does not exist.

## [v0.2.2] - 2015-08-27

### Added

  * The documentation in `doc` is now much more detailed and contains examples
    on how to use the CLI.

  * A trigger `plumbing/rebuild-website` to rebuild the bioboxes.org website
    when a PR is merged into the master branch.

## [v0.2.1] - 2015-08-14

### Fixed

  * A significant bug in the project layout and `setup.py` meant that
    biobox_cli sub modules, the `assets` directory and the `verification`
    directory were included in the `.tar.gz` released file, but not installed.
    This was fixed by moving all files under the `biobox_cli` directory, and
    specifying their inclusion using `find_packages()` and `package_data` in<commit_msg>update changelog<commit_after># Change Log

All notable changes to this project will be documented in this file. This
project adheres to [Semantic Versioning](http://semver.org/).

## [v0.3.0] - date

### Added

  * Support for assembler benchmark bioboxes was added to `biobox run` and
    `biobox verify` allowing the use of images such as bioboxes/quast.

  * The `biobox login` was allowing a user to log into a bash prompt in the
    specified image with test data volumes mounted. This feature was added to
    help interactive debugging when creating a biobox.

  * The `biobox verify` command now returns the reason for the failed
    verification. A flag `--verbose` can be used to list the PASS/FAIL status
    for all the verifications explicitly.

  * Containers are automatically removed by default after being run. This saves
    space on the users system by no longer keeping redundant containers around.
    An additional flag `--no-rm` was added to override this and keep
    the container after use.

  * Verify taxonomic binning benchmark container.

### Fixed

  * Fixed bug where passing full paths as the input arguments would cause a
    crash. Full paths can now be given.

  * Fixed a bug where trying to validate a non-existent Docker image returned a
    verification failure message to the use instead of correctly informing the
    user the image does not exist.

## [v0.2.2] - 2015-08-27

### Added

  * The documentation in `doc` is now much more detailed and contains examples
    on how to use the CLI.

  * A trigger `plumbing/rebuild-website` to rebuild the bioboxes.org website
    when a PR is merged into the master branch.

## [v0.2.1] - 2015-08-14

### Fixed

  * A significant bug in the project layout and `setup.py` meant that
    biobox_cli sub modules, the `assets` directory and the `verification`
    directory were included in the `.tar.gz` released file, but not installed.
    This was fixed by moving all files under the `biobox_cli` directory, and
    specifying their inclusion using `find_packages()` and `package_data` in
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