<commit_before># BioEntity is abstract

Gene.key_primaryidentifier=primaryIdentifier
Gene.key_secondaryidentifier=secondaryIdentifier, organism
Gene.key_symbol_org=symbol, organism
Gene.key_ncbiGeneNumber=ncbiGeneNumber
Protein.key_primaryidentifier=primaryIdentifier
Protein.key_primaryacc=primaryAccession
Protein.key_md5checksum_taxonid=md5checksum, organism
Sequence.key_md5checksum=md5checksum 
Region.key_primaryidentifier_org=primaryIdentifier, organism
Synonym.key_synonym = subject, value, type
Organism.key_taxonid=taxonId
LocatedSequenceFeature.key_primaryidentifier=primaryIdentifier
InfoSource.key_title = title
Publication.key_paper = title, pages, issue, journal, year
Publication.key_pubmed = pubMedId
DataSet.key_title = title
DataSource.key_name = name
Author.key_name = name
Location.key_all = subject, object, end, start, strand, startIsPartial, endIsPartial
OntologyTerm.key_identifier=identifier
OntologyTerm.key_name_ontology=name, ontology
OntologyRelation.key=parentTerm, childTerm, relationship
OntologyTermSynonym.key=name, type
Ontology.key_title=title
Comment.key_comment = text, type, source
ComputationalAnalysis.key_algorithm = algorithm
RankedRelation.key_all = subject, object, rank
SimpleRelation.key_all = subject, object
ProteinDomain.key_identifier = primaryIdentifier
CDS.key_primaryidentifier=primaryIdentifier

# IntAct and BioGRID
InteractionTerm.key_name=name
InteractionTerm.key_identifier=identifier
InteractionExperiment.key_name_pub = name, publication
InteractionRegion.key_region = location, interaction, gene
Interaction.key_interaction = shortName, gene, experiment
Interaction.key_name_role = experiment, name, role<commit_msg>remove unneeded keys<commit_after># BioEntity is abstract

Gene.key_primaryidentifier=primaryIdentifier
Gene.key_secondaryidentifier=secondaryIdentifier, organism
Gene.key_symbol_org=symbol, organism
Gene.key_ncbiGeneNumber=ncbiGeneNumber
Protein.key_primaryidentifier=primaryIdentifier
Protein.key_primaryacc=primaryAccession
Protein.key_md5checksum_taxonid=md5checksum, organism
Sequence.key_md5checksum=md5checksum
Synonym.key_synonym = subject, value, type
Organism.key_taxonid=taxonId
LocatedSequenceFeature.key_primaryidentifier=primaryIdentifier
InfoSource.key_title = title
Publication.key_paper = title, pages, issue, journal, year
Publication.key_pubmed = pubMedId
DataSet.key_title = title
DataSource.key_name = name
Author.key_name = name
OntologyTerm.key_identifier=identifier
OntologyTerm.key_name_ontology=name, ontology
OntologyRelation.key=parentTerm, childTerm, relationship
OntologyTermSynonym.key=name, type
Ontology.key_title=title
Comment.key_comment = text, type, source
ProteinDomain.key_identifier = primaryIdentifier
{'fraction_non_alphanumeric': 0.06468210216832047, 'fraction_numerical': 0.002940095553105476, 'mean_word_length': 10.533898305084746, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7655319', 'n_tokens_mistral': 832, 'n_tokens_neox': 790, 'n_words': 145}