<commit_before>package:
  name: relocate2
  version: 2.0.1

source:
  fn: v2.0.1.tar.gz
  url: https://github.com/stajichlab/RelocaTE2/archive/v2.0.1.tar.gz
  md5: b02894fdfdd62e2672241fa92f300e4c

build:
  number: 2

requirements:
  build:
    - python ==2.7.5
    - perl >=5.10.0
    - samtools >=1.3.1
    - bowtie2 >=2.2.8
    - bedtools >=2.25.0
    - bwa ==0.6.2
    - seqtk >=1.2
    - pysam >=0.9.1
    - blat ==35
  run:
    - python ==2.7.5
    - perl >=5.10.0
    - samtools >=1.3.1
    - bowtie2 >=2.2.8 
    - bedtools >=2.25.0
    - bwa ==0.6.2
    - seqtk >=1.2
    - pysam >=0.9.1
    - blat ==35

test:
   import:
     - pysam
#  commands:
#    - relocaTE2.py --help | grep "optional arguments" > /dev/null<commit_msg>pysam version fixed 0.9.0<commit_after>package:
  name: relocate2
  version: 2.0.1

source:
  fn: v2.0.1.tar.gz
  url: https://github.com/stajichlab/RelocaTE2/archive/v2.0.1.tar.gz
  md5: 395bd7833163bd72fe7a6ec3d85bf9d5

build:
  number: 2

requirements:
  build:
    - python ==2.7.5
    - perl >=5.10.0
    - samtools ==1.3.1
    - bowtie2 ==2.2.8
    - bedtools ==2.25.0
    - bwa ==0.6.2
    - seqtk ==1.2
    - pysam ==0.9.0
    - blat ==35
  run:
    - python ==2.7.5
    - perl >=5.10.0
    - samtools ==1.3.1
    - bowtie2 ==2.2.8 
    - bedtools ==2.25.0
    - bwa ==0.6.2
    - seqtk ==1.2
    - pysam ==0.9.0
    - blat ==35

test:
   import:
     - pysam

#   commands:
#    - python -c "import pysam;print pysam.__version__"
#    - relocaTE2.py --help | grep "optional arguments" > /dev/null
{'fraction_non_alphanumeric': 0.17857142857142858, 'fraction_numerical': 0.11818181818181818, 'mean_word_length': 1.8069216757741349, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 19, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1753171', 'n_tokens_mistral': 780, 'n_tokens_neox': 730, 'n_words': 135}