<commit_before>==================
Running CWL RNA-seq
==================

This Common Workflow Language (`CWL <https://www.commonwl.org/>`_) `RNA-seq <https://www.technologynetworks.com/genomics/articles/rna-seq-basics-applications-and-protocol-299461#:~:text=RNA%2Dseq%20(RNA%2Dsequencing,patterns%20encoded%20within%20our%20RNA.>`_
 workflow maps read-pairs to a reference genome and produces a transcript. CWL enables the user to connect command line tools to create workflows; it is a specification and is therefore portable across platforms that support CWL.

Requirements:
=============

-  CWLtool
-  Docker


.. note:: Requirements is crucial in order to run this workflow, please make sure you have them installed properly prior to running this workflow.

<commit_msg>Update CWL-RNAseq.rst<commit_after>==================
Running CWL RNA-seq
==================

This Common Workflow Language (`CWL <https://www.commonwl.org/>`_) `RNA-seq <https://www.technologynetworks.com/genomics/articles/rna-seq-basics-applications-and-protocol-299461#:~:text=RNA%2Dseq%20(RNA%2Dsequencing,patterns%20encoded%20within%20our%20RNA.>`_workflow maps read-pairs to a reference genome and produces a transcript. 

CWL enables the user to connect command line tools to create workflows; it is a specification and is therefore portable across platforms that support CWL.

Requirements:
=============

-  CWLtool
-  Docker


.. note:: The requirements above are crucial to running this workflow. Please make sure you have them installed properly prior to running this workflow.


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