<commit_before>#!/bin/bash -i

VENV_NAME=18SV4

#if [ -d "~/miniconda3/envs/${VENV_NAME}" ]; then
  conda remove -y -n ${VENV_NAME} --all
#fi

# there is a problem with VirtualBox shared filesystems
# that prevents a Python virtual environment from being created
# in a host directory

conda create -y -n ${VENV_NAME} python=2.7
source activate ${VENV_NAME}
conda update conda
conda update pip

# install numpy explicitly or biom-format will not install
conda install -y numpy

pip install -e .[test]<commit_msg>specify numpy version to avoid problems with QIIME and the latest numpy<commit_after>#!/bin/bash -i

VENV_NAME=18SV4

#if [ -d "~/miniconda3/envs/${VENV_NAME}" ]; then
  conda remove -y -n ${VENV_NAME} --all
#fi

# there is a problem with VirtualBox shared filesystems
# that prevents a Python virtual environment from being created
# in a host directory

conda create -y -n ${VENV_NAME} python=2.7
source activate ${VENV_NAME}
conda update conda
conda update pip

# install numpy explicitly or biom-format will not install
conda install -y numpy=1.11

pip install -e .[test]
{'fraction_non_alphanumeric': 0.09567617295308188, 'fraction_numerical': 0.013799448022079117, 'mean_word_length': 4.256038647342995, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2091262', 'n_tokens_mistral': 371, 'n_tokens_neox': 357, 'n_words': 142}