<commit_before>biojs-vis-msa
==========

The BioJS MSA Viewer written in CoffeeScript. 

```
          .         .                                              
         ,8.       ,8.            d888888o.           .8.          
        ,888.     ,888.         .`8888:' `88.        .888.         
       .`8888.   .`8888.        8.`8888.   Y8       :88888.        
      ,8.`8888. ,8.`8888.       `8.`8888.          . `88888.       
     ,8'8.`8888,8^8.`8888.       `8.`8888.        .8. `88888.      
    ,8' `8.`8888' `8.`8888.       `8.`8888.      .8`8. `88888.     
   ,8'   `8.`88'   `8.`8888.       `8.`8888.    .8' `8. `88888.    
  ,8'     `8.`'     `8.`8888.  8b   `8.`8888.  .8'   `8. `88888.   
 ,8'       `8        `8.`8888. `8b.  ;8.`8888 .888888888. `88888.  
,8'         `         `8.`8888. `Y8888P ,88P'.8'       `8. `88888.
```

[![Build Status](https://travis-ci.org/greenify/biojs-vis-msa.svg?branch=master)](https://travis-ci.org/greenify/biojs-vis-msa)
[![NPM version](http://img.shields.io/npm/v/biojs-vis-msa.svg)](https://www.npmjs.org/package/biojs-vis-msa)
[![Dependencies](https://david-dm.org/greenify/biojs-vis-msa.png)](https://david-dm.org/greenify/biojs-vis-msa)
[![Code Climate](https://codeclimate.com/github/greenify/biojs-vis-msa/badges/gpa.svg)](https://codeclimate.com/github/greenify/biojs-vis-msa)
[![NPM downloads](http://img.shields.io/npm/dm/biojs-vis-msa.svg)](https://www.npmjs.org/package/biojs-vis-msa)


```html
<script src=//cdn.biojs-msa.org/msa/0.1/msa.min.gz.js></script>
<link type=text/css rel=stylesheet href=//cdn.biojs-msa.org/msa/0.1/msa.min.gz.css />
```

Yes you can either link to the minified, gzipped CDN version or download the dev version from S3 .

JS  | CSS
------------- | -------------
[![Min version](http://img.shields.io/badge/prod-26kB-blue.svg)](https://cdn.biojs-msa.org/msa/latest/msa.min.gz.js)  | [![Min version](http://img.shields.io/badge/prod-2kB-blue.svg)](https://cdn.biojs-msa.org/msa/latest/msa.min.gz.css)
[![Dev version](http://img.shields.io/badge/dev-latest-yellow.svg)](https://s3-eu-west-1.amazonaws.com/biojs/msa/latest/msa.js) | [![Dev version](http://img.shields.io/badge/dev-latest-yellow.svg)](https://s3-eu-west-1.amazonaws.com/biojs/msa/latest/msa.css)



In case
* Amazon S3 should be ever down, there is a [redundant build server](https://drone.io/github.com/greenify/biojs-vis-msa/files). 
* you need a uglified unzipped CDN version, just remove the `.gz` in the file name.
* you want the latest version, replace the version number with `latest`.

Demo
-----

[![JSBin clustal](http://img.shields.io/badge/jsbin-clustal-blue.svg)](http://jsbin.com/quvex/3/edit) 
[![JSBin large](http://img.shields.io/badge/jsbin-large-blue.svg)](http://jsbin.com/zunuko/1/edit) 


[Current sniper](http://sniper.biojs-msa.org:9090/snippets/msa_show_menu) with different examples


#### display an MSA
<commit_msg>updated styles in the large jsbin example<commit_after>biojs-vis-msa
==========

The BioJS MSA Viewer written in CoffeeScript. 

```
          .         .                                              
         ,8.       ,8.            d888888o.           .8.          
        ,888.     ,888.         .`8888:' `88.        .888.         
       .`8888.   .`8888.        8.`8888.   Y8       :88888.        
      ,8.`8888. ,8.`8888.       `8.`8888.          . `88888.       
     ,8'8.`8888,8^8.`8888.       `8.`8888.        .8. `88888.      
    ,8' `8.`8888' `8.`8888.       `8.`8888.      .8`8. `88888.     
   ,8'   `8.`88'   `8.`8888.       `8.`8888.    .8' `8. `88888.    
  ,8'     `8.`'     `8.`8888.  8b   `8.`8888.  .8'   `8. `88888.   
 ,8'       `8        `8.`8888. `8b.  ;8.`8888 .888888888. `88888.  
,8'         `         `8.`8888. `Y8888P ,88P'.8'       `8. `88888.
```

[![Build Status](https://travis-ci.org/greenify/biojs-vis-msa.svg?branch=master)](https://travis-ci.org/greenify/biojs-vis-msa)
[![NPM version](http://img.shields.io/npm/v/biojs-vis-msa.svg)](https://www.npmjs.org/package/biojs-vis-msa)
[![Dependencies](https://david-dm.org/greenify/biojs-vis-msa.png)](https://david-dm.org/greenify/biojs-vis-msa)
[![Code Climate](https://codeclimate.com/github/greenify/biojs-vis-msa/badges/gpa.svg)](https://codeclimate.com/github/greenify/biojs-vis-msa)
[![NPM downloads](http://img.shields.io/npm/dm/biojs-vis-msa.svg)](https://www.npmjs.org/package/biojs-vis-msa)


```html
<script src=//cdn.biojs-msa.org/msa/0.1/msa.min.gz.js></script>
<link type=text/css rel=stylesheet href=//cdn.biojs-msa.org/msa/0.1/msa.min.gz.css />
```

Yes you can either link to the minified, gzipped CDN version or download the dev version from S3 .

JS  | CSS
------------- | -------------
[![Min version](http://img.shields.io/badge/prod-26kB-blue.svg)](https://cdn.biojs-msa.org/msa/latest/msa.min.gz.js)  | [![Min version](http://img.shields.io/badge/prod-2kB-blue.svg)](https://cdn.biojs-msa.org/msa/latest/msa.min.gz.css)
[![Dev version](http://img.shields.io/badge/dev-latest-yellow.svg)](https://s3-eu-west-1.amazonaws.com/biojs/msa/latest/msa.js) | [![Dev version](http://img.shields.io/badge/dev-latest-yellow.svg)](https://s3-eu-west-1.amazonaws.com/biojs/msa/latest/msa.css)



In case
* Amazon S3 should be ever down, there is a [redundant build server](https://drone.io/github.com/greenify/biojs-vis-msa/files). 
* you need a uglified unzipped CDN version, just remove the `.gz` in the file name.
* you want the latest version, replace the version number with `latest`.

Demo
-----

[![JSBin clustal](http://img.shields.io/badge/jsbin-clustal-blue.svg)](http://jsbin.com/quvex/3/edit) 
[![JSBin large](http://img.shields.io/badge/jsbin-large-blue.svg)](http://jsbin.com/zunuko/4/edit) 


[Current sniper](http://sniper.biojs-msa.org:9090/snippets/msa_show_menu) with different examples


#### display an MSA

{'fraction_non_alphanumeric': 0.21538990037787703, 'fraction_numerical': 0.07385778083132943, 'mean_word_length': 2.2658440830061695, 'pattern_counts': {'":': 0, '<': 9, '<?xml version=': 0, '>': 9, 'https://': 26, 'lorem ipsum': 0, 'www.': 4, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 2, 'word_list_counts': {'cursed_substrings.json': 8, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '844367', 'n_tokens_mistral': 2665, 'n_tokens_neox': 2393, 'n_words': 328}