<commit_before># Makefile
#
# Runs tests for pyani module

DATA=tests/test_ani_data
OUT_B=tests/test_ANIb_output
OUT_BLASTALL=tests/test_ANIblastall_output
OUT_M=tests/test_ANIm_output
OUT_TETRA=tests/test_TETRA_output

clean :
	rm -rf $(OUT_M) $(OUT_B) $(OUT_BLASTALL) $(OUT_TETRA)

test :
	./average_nucleotide_identity.py -i $(DATA) -o $(OUT_M) -m ANIm -g -v
	./average_nucleotide_identity.py -i $(DATA) -o $(OUT_B) -m ANIb -g -v 
	./average_nucleotide_identity.py -i $(DATA) -o $(OUT_BLASTALL) \
	  -m ANIblastall -g -v
	./average_nucleotide_identity.py -i $(DATA) -o $(OUT_TETRA) \
	  -m TETRA -g -v

all : clean test<commit_msg>Separated out individual algorithm test runs<commit_after># Makefile
#
# Runs tests for pyani module

DATA=tests/test_ani_data
OUT_B=tests/test_ANIb_output
OUT_BLASTALL=tests/test_ANIblastall_output
OUT_M=tests/test_ANIm_output
OUT_TETRA=tests/test_TETRA_output

all : clean test

ANIb :
	./average_nucleotide_identity.py -i $(DATA) -o $(OUT_M) -m ANIm -g -v

ANIm :
	./average_nucleotide_identity.py -i $(DATA) -o $(OUT_B) -m ANIb -g -v 

ANIblastall :
	./average_nucleotide_identity.py -i $(DATA) -o $(OUT_BLASTALL) \
	  -m ANIblastall -g -v

TETRA :
	./average_nucleotide_identity.py -i $(DATA) -o $(OUT_TETRA) \
	  -m TETRA -g -v

clean :
	rm -rf $(OUT_M) $(OUT_B) $(OUT_BLASTALL) $(OUT_TETRA)

test : ANIm ANIb ANIblastall TETRA

{'fraction_non_alphanumeric': 0.13450292397660818, 'fraction_numerical': 0.0, 'mean_word_length': 4.166037735849057, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6103087', 'n_tokens_mistral': 625, 'n_tokens_neox': 585, 'n_words': 130}