<commit_before>package: 
  name: haystack_bio
  version: "0.5.2"

source: 
  fn: haystack_bio-0.5.2.tar.gz
  sha256: cca747843f98a226434b9228ab289f7521df0a424234c5fe66da26faf12820d1
  url: "https://github.com/pinellolab/haystack_bio/archive/0.5.2.tar.gz"


build: 
  entry_points: 
    - "haystack_pipeline = haystack.run_pipeline:main"
    - "haystack_hotspots = haystack.find_hotspots:main"
    - "haystack_motifs = haystack.find_motifs:main"
    - "haystack_tf_activity_plane = haystack.generate_tf_activity_plane:main"
    - "haystack_download_genome = haystack.download_genome:main"
    - "haystack_run_test = haystack.haystack_common:run_testdata"
  number: 0

about: 
  home: "https://github.com/pinellolab/haystack_bio"
  license: GPLv3
  summary: "Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline"


requirements: 
  build: 
    - python
    - openjdk
    - meme
    - bedtools
    - sambamba
    - ucsc-bigwigaverageoverbed
    - ucsc-bedgraphtobigwig
    - bx-python
    - numpy
    - scipy
    - matplotlib
    - jinja2
    - pandas
    - tqdm
    - weblogo
  run:
    - openjdk
    - meme
    - bedtools
    - sambamba
    - ucsc-bigwigaverageoverbed
    - ucsc-bedgraphtobigwig
    - bx-python
    - numpy
    - scipy
    - matplotlib
    - jinja2
    - pandas
    - tqdm
    - weblogo

test: 
  commands: 
    - "haystack_hotspots -h"
<commit_msg>Haystack 0.5.2 (#6140)<commit_after>package: 
  name: haystack_bio
  version: "0.5.2"

source: 
  fn: haystack_bio-0.5.2.tar.gz
  sha256: 9686b46c55d3723742cfea21f915c031d4967bb475874472e8cc0807c9f6a848
  url: "https://github.com/pinellolab/haystack_bio/archive/0.5.2.tar.gz"


build: 
  entry_points: 
    - "haystack_pipeline = haystack.run_pipeline:main"
    - "haystack_hotspots = haystack.find_hotspots:main"
    - "haystack_motifs = haystack.find_motifs:main"
    - "haystack_tf_activity_plane = haystack.generate_tf_activity_plane:main"
    - "haystack_download_genome = haystack.download_genome:main"
    - "haystack_run_test = haystack.haystack_common:run_testdata"
  number: 1


about: 
  home: "https://github.com/pinellolab/haystack_bio"
  license: GPLv3
  summary: "Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline"


requirements: 
  build: 
    - python
    - openjdk
    - meme
    - bedtools
    - sambamba
    - ucsc-bigwigaverageoverbed
    - ucsc-bedgraphtobigwig
    - bx-python
    - numpy
    - scipy
    - matplotlib
    - jinja2
    - pandas
    - tqdm
    - weblogo
  run:
    - openjdk
    - meme
    - bedtools
    - sambamba
    - ucsc-bigwigaverageoverbed
    - ucsc-bedgraphtobigwig
    - bx-python
    - numpy
    - scipy
    - matplotlib
    - jinja2
    - pandas
    - tqdm
    - weblogo

test: 
  commands: 
    - "haystack_hotspots -h"

{'fraction_non_alphanumeric': 0.09525521207764198, 'fraction_numerical': 0.04601006470165349, 'mean_word_length': 2.652230971128609, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 4, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '752880', 'n_tokens_mistral': 1229, 'n_tokens_neox': 1099, 'n_words': 158}