<commit_before><tool id="meme_meme" name="MEME" version="1.0.3">
  <requirements>
    <requirement type="package" version="4.10.0_4">meme</requirement>
  </requirements>
  <description>motif discovery</description>
  <command>meme "$input1" -o "${html_outfile.files_path}" 
  -nostatus
  
  ##-p \${GALAXY_SLOTS:-4} ##number of processors, but requires MPI.
  
  #if str( $options_type.options_type_selector ) == 'advanced':
  -sf "${ str( $options_type.sf ).replace( ' ', '_' ) }"
  -${options_type.alphabet_type.alphabet_type_selector} 
  -mod "${options_type.mod_type.mod_type_selector}" 
  -nmotifs "${options_type.nmotifs}" 
  -wnsites "${options_type.wnsites}"
  -maxsize "${options_type.maxsize}"
  <commit_msg>introduce mistake to check function of planemo linting badge.<commit_after><tool id="meme_meme" name="MEME" version="1.0.3">
  <requirements>
    <requirement type="package" version="4.10.0_4">meme</requirement>
  </requirements>
  <descriptionmotif discovery</description>
  <command>meme "$input1" -o "${html_outfile.files_path}" 
  -nostatus
  
  ##-p \${GALAXY_SLOTS:-4} ##number of processors, but requires MPI.
  
  #if str( $options_type.options_type_selector ) == 'advanced':
  -sf "${ str( $options_type.sf ).replace( ' ', '_' ) }"
  -${options_type.alphabet_type.alphabet_type_selector} 
  -mod "${options_type.mod_type.mod_type_selector}" 
  -nmotifs "${options_type.nmotifs}" 
  -wnsites "${options_type.wnsites}"
  -maxsize "${options_type.maxsize}"
  
{'fraction_non_alphanumeric': 0.17262306136210384, 'fraction_numerical': 0.013486176668914362, 'mean_word_length': 4.888888888888889, 'pattern_counts': {'":': 0, '<': 19, '<?xml version=': 0, '>': 18, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5753072', 'n_tokens_mistral': 561, 'n_tokens_neox': 535, 'n_words': 90}