<commit_before>#summary Using sbml2matlab

= Introduction =

sbml2matlab is an executable that can be called from the command line to translate SBML files to their MATLAB model equivalents.

= Usage =
sbml2matlab may be called in four different ways:

1) sbml2matlab.exe
SBML input is from stdin, MATLAB output is to stdout

2) sbml2matlab.exe -input [inputFile.sbml]
SBML input is from inputFile.sbml, Matlab output is to stdout

3) sbml2matlab.exe -output [outputFile.m]
SBML input is from stdin, MATLAB output is to outputFile.m

4) sbml2matlab.exe -input [inputFile.sbml] -output [outputFile.m]
SBML input is from inputFile.sbml, MATLAB is to outputFile.m

Replace the square brackets with the paths of the input and output files, respectively.

= Limitations =

Generally, sbml2matlab currently does not support the use of events, algebraic rules, or compartment rate rules.

Validation test and current analysis of sbml2matlab can be found here: http://code.google.com/p/sbwtools/wiki/CurrentValidation

The updated sbml2matlab wiki may be found here: http://code.google.com/p/sbml2matlab/w/list<commit_msg>updated README.txt, removed outdated material<commit_after>#summary Using sbml2matlab

= Introduction =

sbml2matlab is an executable that can be called from the command line to translate SBML files to their MATLAB model equivalents.

= Usage =
sbml2matlab may be called in four different ways:

1) sbml2matlab.exe
SBML input is from stdin, MATLAB output is to stdout

2) sbml2matlab.exe -input [inputFile.sbml]
SBML input is from inputFile.sbml, Matlab output is to stdout

3) sbml2matlab.exe -output [outputFile.m]
SBML input is from stdin, MATLAB output is to outputFile.m

4) sbml2matlab.exe -input [inputFile.sbml] -output [outputFile.m]
SBML input is from inputFile.sbml, MATLAB is to outputFile.m

Replace the square brackets with the paths of the input and output files, respectively.
{'fraction_non_alphanumeric': 0.06089238845144357, 'fraction_numerical': 0.013648293963254593, 'mean_word_length': 4.758308157099698, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '588940', 'n_tokens_mistral': 621, 'n_tokens_neox': 588, 'n_words': 247}