<commit_before>{
  "ver" : "1.0.0",
  "name" : "Load NCBI RefSeq genomes to KBase",
  "authors" : [ "chenry", "qzhang" ],
  "contact" : "<EMAIL>",
  "visble" : true,
  "categories" : ["active"],
  "widgets" : {
    "input" : "kbaseNarrativeMethodInput",
    "output" : "no-display"
  },
  "parameters" : [ {
    "id" : "refseq",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":["1"],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id" : "ensembl",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":["0"],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id": "phytozome",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":["0"],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id": "index_in_solr",
    "optional":false,
    "advanced":true,
    "allow_multiple":false,
    "default_values":["0"],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id": "start_offset",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":[""],
    "field_type" : "text",
       "text_options" : {
           "validate_as": "int"
       }
    }, {
    "id": "cut_off_date",
    "optional":false,
    "advanced":true,
    "allow_multiple":false,
    "default_values":["2018-05-19"],
    "field_type" : "text",
       "text_options" : {
           "valid_as": "text"
       }
    }, {
    "id": "genome_type",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":["KBaseGenomes.Genome-9.0"],
    "field_type" : "text",
       "text_options" : {
           "valid_as": "text"
       }  
  }, {
    "id" : "kb_env",
    "default_values" : ["ci"],
    "advanced" : true,
    "allow_multiple" : false,
    "optional" : false,
    "field_type" : "text",
    "text_options" : {
      "valid_as" : "text"
    }
  }],
  "job_id_output_field": "docker",
  "behavior" : {
    "service-mapping" : {
      "url" : "",
      "name" : "ReferenceDataManager",
      "method" : "load_refgenomes",
      "input_mapping" : [
        {
          "input_parameter": "ensembl",
          "target_property": "ensembl"
        },
        {
          "input_parameter": "refseq",
          "target_property": "refseq"
        },
        {
          "input_parameter": "phytozome",
          "target_property": "phytozome"
        },
        {
          "input_parameter" : "kb_env",<commit_msg>update a ui default setting<commit_after>{
  "ver" : "1.0.0",
  "name" : "Load NCBI RefSeq genomes to KBase",
  "authors" : [ "chenry", "qzhang" ],
  "contact" : "<EMAIL>",
  "visble" : true,
  "categories" : ["active"],
  "widgets" : {
    "input" : "kbaseNarrativeMethodInput",
    "output" : "no-display"
  },
  "parameters" : [ {
    "id" : "refseq",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":["1"],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id" : "ensembl",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":["0"],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id": "phytozome",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":["0"],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id": "index_in_solr",
    "optional":false,
    "advanced":true,
    "allow_multiple":false,
    "default_values":["0"],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id": "start_offset",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":[""],
    "field_type" : "text",
       "text_options" : {
           "validate_as": "int"
       }
    }, {
    "id": "cut_off_date",
    "optional":false,
    "advanced":true,
    "allow_multiple":false,
    "default_values":["2018-05-19"],
    "field_type" : "text",
       "text_options" : {
           "valid_as": "text"
       }
    }, {
    "id": "genome_type",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":["KBaseGenomes.Genome-9.0"],
    "field_type" : "text",
       "text_options" : {
           "valid_as": "text"
       }  
  }, {
    "id" : "kb_env",
    "default_values" : ["prod"],
    "advanced" : true,
    "allow_multiple" : false,
    "optional" : false,
    "field_type" : "text",
    "text_options" : {
      "valid_as" : "text"
    }
  }],
  "job_id_output_field": "docker",
  "behavior" : {
    "service-mapping" : {
      "url" : "",
      "name" : "ReferenceDataManager",
      "method" : "load_refgenomes",
      "input_mapping" : [
        {
          "input_parameter": "ensembl",
          "target_property": "ensembl"
        },
        {
          "input_parameter": "refseq",
          "target_property": "refseq"
        },
        {
          "input_parameter": "phytozome",
          "target_property": "phytozome"
        },
        {
          "input_parameter" : "kb_env",
{'fraction_non_alphanumeric': 0.19073275862068967, 'fraction_numerical': 0.008979885057471264, 'mean_word_length': 2.448297213622291, 'pattern_counts': {'":': 110, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2971724', 'n_tokens_mistral': 2055, 'n_tokens_neox': 1978, 'n_words': 301}