<commit_before>use VRPipe::Base;

class VRPipe::Pipelines::writeback_manual_lane_qc with VRPipe::PipelineRole {
    method name {
        return 'writeback_manual_lane_qc';
    }
    method _num_steps {
        return 1;
    }
    method description {
        return 'Writes back qc data from vrtrack database to bam file metadata for filtering.';
    }
    method steps {
        $self->throw("steps cannot be called on this non-persistent object");
    }
    
    method _step_list {
        return ([ VRPipe::Step->get(name => 'manual_lane_qc_to_meta') ],
        [ VRPipe::StepAdaptorDefiner->new(from_step => 0, to_step => 1, to_key => 'bam_files'),
        [ ]);
    }
}

1;<commit_msg>fix missing ] in new writeback pipeline<commit_after>use VRPipe::Base;

class VRPipe::Pipelines::writeback_manual_lane_qc with VRPipe::PipelineRole {
    method name {
        return 'writeback_manual_lane_qc';
    }
    method _num_steps {
        return 1;
    }
    method description {
        return 'Writes back qc data from vrtrack database to bam file metadata for filtering.';
    }
    method steps {
        $self->throw("steps cannot be called on this non-persistent object");
    }
    
    method _step_list {
        return ([ VRPipe::Step->get(name => 'manual_lane_qc_to_meta') ],
        [ VRPipe::StepAdaptorDefiner->new(from_step => 0, to_step => 1, to_key => 'bam_files') ],
        [ ]);
    }
}

1;
{'fraction_non_alphanumeric': 0.11189801699716714, 'fraction_numerical': 0.0056657223796034, 'mean_word_length': 2.839673913043478, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 17, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1883824', 'n_tokens_mistral': 481, 'n_tokens_neox': 459, 'n_words': 110}