<commit_before>grails.serverURL={{ collectory_base_url }}{{collectory_context_path}}
serverName={{ collectory_base_url }}
grails.cors.enabled=true
grails.resources.adhoc.patterns=['/images/*', '/data/*', '/img/*', '/theme/default/*', '/css/*', '/js/*', '/plugins/*' ]
# CAS Config
security.cas.casServerName={{ auth_base_url }}
security.cas.uriFilterPattern={{ collectory_uri_filter_pattern | default('/admin.*,/admin/.*,/admin/.*/.*,/collection.*,/institution.*,/contact.*,/reports.*,/providerCode.*,/providerMap.*,/dataProvider.*,/dataResource.*,/dataHub.*,/manage/.*,/ws/ipt/scan/.*,/alaAdmin.*') }}

security.cas.authenticateOnlyIfLoggedInFilterPattern={{ collectory_authenticate_only_if_logged_in_filter_pattern | default('/public/show.*') }}
security.cas.uriExclusionFilterPattern={{ collectory_exclusion_filter_pattern | default('/images.*,/css.*,/js.*') }}
security.cas.appServerName={{ collectory_base_url }}
security.cas.casServerUrlPrefix={{ auth_base_url }}/cas
security.cas.casServerLoginUrl={{ auth_base_url }}/cas/login
security.cas.casServerLogoutUrl={{ auth_base_url }}/cas/logout
security.cas.loginUrl={{ auth_base_url }}/cas/login
security.cas.logoutUrl={{ auth_base_url }}/cas/logout

security.cas.contextPath={{ collectory_context_path }}
security.cas.authCookieName={{ auth_cookie_name | default('ALA-Auth') }}


security.apikey.serviceUrl={{ apikey_service_url | default('https://auth.ala.org.au/apikey/ws/check?apikey=')}}
security.apikey.checkEnabled={{ api_key_check_enabled | default('false') }}

# Default Locale
defaultLocale={{ default_locale | default('en') }}

# Enable / Disable CAS
security.cas.bypass={{ bypass_cas | default(false) }}
disableCAS={{ bypass_cas | default(false) }}

# Data directories
repository.location.images={{ collectory_data_dir }}/data

# Google API key
google.apikey={{ google_apikey | default('') }}

# External API access
api_key={{ api_key | default('<KEY>') }}

# Biocache integration
biocacheUiURL={{ biocache_hub_url }}
biocacheServicesUrl={{ biocache_service_url }}

# Skinning
# ala.skin is deprecated after:
# https://github.com/AtlasOfLivingAustralia/collectory-plugin/commit/f47c181ee4c5c52f150670f84f4f55f5d20ade31
# configure skin.layout instead
ala.skin={{ skin | default('main') }}
skin.layout={{ (collectory_skin_layout | default(skin_layout)) | default('ala') }}
skin.fluidLayout={{ fluidLayout | default('')}}
chartsBgColour={{ charts_bg_colour | default('#fffef7') }}

# DB config
dataSource.username={{ collectory_db_user }}
dataSource.password={{ <PASSWORD> }}
dataSource.url=jdbc:mysql://{{ collectory_db_host_address }}:3306/collectory?autoReconnect=true&connectTimeout=0&useUnicode=true&characterEncoding=UTF-8&useSSL={{mysql_connection_ssl | default(false)}}

# Map config
collectionsMap.centreMapLon={{ collections_map_lon | default('-3.7036') }}
collectionsMap.centreMapLat={{ collections_map_lat | default('40.4169') }}
collectionsMap.defaultZoom={{ collections_map_zoom | default('5') }}

# Project name
projectNameShort={{ orgNameShort | default('ALA') }}
projectName={{ orgNameLong | default('Atlas of Living Australia') }}
regionName={{ region | default('Australia') }}

# EML config
eml.organizationName={{ orgNameLong | default('Atlas of Living Australia') }}
eml.deliveryPoint={{ eml_delivery_point | default('Clunies Ross Street') }}
eml.city={{ eml_city | default('Canberra') }}
eml.administrativeArea={{ eml_admin_area | default('ACT') }}
eml.postalCode={{ eml_postal_code | default('2601') }}
eml.country={{ eml_country | default('Australia') }}

# The name displayed top left of header
skin.homeUrl = {{ skin_home_url | default('http://www.ala.org.au') }}
skin.orgNameLong={{ orgNameLong | default('Atlas of Living Australia') }}
skin.orgNameShort={{ orgNameShort | default('Atlas') }}
skin.favicon={{ skin_favicon | default('https://www.ala.org.au/app/uploads/2019/01/cropped-favicon-32x32.png') }}
orgNameLong={{ orgNameLong | default('Atlas of Living Australia') }}

# Header and footer
headerAndFooter.baseURL={{ header_and_footer_baseurl | default('https://www.ala.org.au/commonui-bs3')}}
headerAndFooter.version={{ header_and_footer_version | default('1') }}

ala.baseURL={{ ala_base_url | default('https://www.ala.org.au')}}
bie.baseURL={{ bie_base_url | default('https://bie.ala.org.au')}}
bie.searchPath={{ bie_search_path | default('/search') }}

# Disable UI components
disableOverviewMap={{ disable_map | default('true') }}
disableAlertLinks={{ disable_alerts | default('true') }}
disableLoggerLinks={{ disable_logger | default('true') }}

# Feeds config
rifcs.excludeBounds={{ rifcs_exclude_bounds | default('false') }}

# Logger URL
loggerURL={{ (logger_webservice_url | default(logger_url)) }}

# External services
alertUrl={{ (alerts_url | default(alert_url)) | default('') }}
speciesListToolUrl={{ species_list_tool_url | default('https://lists.ala.org.au/speciesListItem/list/') }}

# GBIF base URL for webservices
gbifApiUrl={{ gbif_api_url | default('http://api.gbif.org/v1') }}

# GBIF Registration enables the Collectory to create and update organisations and datasets
# This mode of operation is only expected to be used by National Nodes running the ALA as a publishing gateway to GBIF.
# (i.e. where the ALA installation is not sourcing information from GBIF.org itself)
gbifRegistrationEnabled={{ gbif_registration_enabled | default('false') }}
gbifEndorsingNodeKey={{ gbif_endorsing_node_key | default('') }}
gbifInstallationKey={{ gbif_installation_key | default('') }}
gbifApiUser={{ gbif_api_user | default('') }}
gbifApiPassword={{ gbif_api_password | default('') }}
gbifExportUrlBase={{ gbif_export_url_base | default('') }}
useGbifDoi={{ gbif_use_doi | default('false') }}
gbifRegistrationDryRun={{ gbif_registration_dry_run | default('true') }}
gbifLicenceMappingUrl={{ gbif_licence_mapping_url | default('file:///data/ala-collectory/config/default-gbif-licence-mapping.json') }}
gbifOrphansPublisherID={{ gbif_orphans_publisher_id | default('') }}

# URL paths for archives<commit_msg>Fix for alerts-test appearing in prod collectory<commit_after>grails.serverURL={{ collectory_base_url }}{{collectory_context_path}}
serverName={{ collectory_base_url }}
grails.cors.enabled=true
grails.resources.adhoc.patterns=['/images/*', '/data/*', '/img/*', '/theme/default/*', '/css/*', '/js/*', '/plugins/*' ]
# CAS Config
security.cas.casServerName={{ auth_base_url }}
security.cas.uriFilterPattern={{ collectory_uri_filter_pattern | default('/admin.*,/admin/.*,/admin/.*/.*,/collection.*,/institution.*,/contact.*,/reports.*,/providerCode.*,/providerMap.*,/dataProvider.*,/dataResource.*,/dataHub.*,/manage/.*,/ws/ipt/scan/.*,/alaAdmin.*') }}

security.cas.authenticateOnlyIfLoggedInFilterPattern={{ collectory_authenticate_only_if_logged_in_filter_pattern | default('/public/show.*') }}
security.cas.uriExclusionFilterPattern={{ collectory_exclusion_filter_pattern | default('/images.*,/css.*,/js.*') }}
security.cas.appServerName={{ collectory_base_url }}
security.cas.casServerUrlPrefix={{ auth_base_url }}/cas
security.cas.casServerLoginUrl={{ auth_base_url }}/cas/login
security.cas.casServerLogoutUrl={{ auth_base_url }}/cas/logout
security.cas.loginUrl={{ auth_base_url }}/cas/login
security.cas.logoutUrl={{ auth_base_url }}/cas/logout

security.cas.contextPath={{ collectory_context_path }}
security.cas.authCookieName={{ auth_cookie_name | default('ALA-Auth') }}


security.apikey.serviceUrl={{ apikey_service_url | default('https://auth.ala.org.au/apikey/ws/check?apikey=')}}
security.apikey.checkEnabled={{ api_key_check_enabled | default('false') }}

# Default Locale
defaultLocale={{ default_locale | default('en') }}

# Enable / Disable CAS
security.cas.bypass={{ bypass_cas | default(false) }}
disableCAS={{ bypass_cas | default(false) }}

# Data directories
repository.location.images={{ collectory_data_dir }}/data

# Google API key
google.apikey={{ google_apikey | default('') }}

# External API access
api_key={{ api_key | default('<KEY>') }}

# Biocache integration
biocacheUiURL={{ biocache_hub_url }}
biocacheServicesUrl={{ biocache_service_url }}

# Skinning
# ala.skin is deprecated after:
# https://github.com/AtlasOfLivingAustralia/collectory-plugin/commit/f47c181ee4c5c52f150670f84f4f55f5d20ade31
# configure skin.layout instead
ala.skin={{ skin | default('main') }}
skin.layout={{ (collectory_skin_layout | default(skin_layout)) | default('ala') }}
skin.fluidLayout={{ fluidLayout | default('')}}
chartsBgColour={{ charts_bg_colour | default('#fffef7') }}

# DB config
dataSource.username={{ collectory_db_user }}
dataSource.password={{ <PASSWORD>ory_db_password }}
dataSource.url=jdbc:mysql://{{ collectory_db_host_address }}:3306/collectory?autoReconnect=true&connectTimeout=0&useUnicode=true&characterEncoding=UTF-8&useSSL={{mysql_connection_ssl | default(false)}}

# Map config
collectionsMap.centreMapLon={{ collections_map_lon | default('-3.7036') }}
collectionsMap.centreMapLat={{ collections_map_lat | default('40.4169') }}
collectionsMap.defaultZoom={{ collections_map_zoom | default('5') }}

# Project name
projectNameShort={{ orgNameShort | default('ALA') }}
projectName={{ orgNameLong | default('Atlas of Living Australia') }}
regionName={{ region | default('Australia') }}

# EML config
eml.organizationName={{ orgNameLong | default('Atlas of Living Australia') }}
eml.deliveryPoint={{ eml_delivery_point | default('Clunies Ross Street') }}
eml.city={{ eml_city | default('Canberra') }}
eml.administrativeArea={{ eml_admin_area | default('ACT') }}
eml.postalCode={{ eml_postal_code | default('2601') }}
eml.country={{ eml_country | default('Australia') }}

# The name displayed top left of header
skin.homeUrl = {{ skin_home_url | default('http://www.ala.org.au') }}
skin.orgNameLong={{ orgNameLong | default('Atlas of Living Australia') }}
skin.orgNameShort={{ orgNameShort | default('Atlas') }}
skin.favicon={{ skin_favicon | default('https://www.ala.org.au/app/uploads/2019/01/cropped-favicon-32x32.png') }}
orgNameLong={{ orgNameLong | default('Atlas of Living Australia') }}

# Header and footer
headerAndFooter.baseURL={{ header_and_footer_baseurl | default('https://www.ala.org.au/commonui-bs3')}}
headerAndFooter.version={{ header_and_footer_version | default('1') }}

ala.baseURL={{ ala_base_url | default('https://www.ala.org.au')}}
bie.baseURL={{ bie_base_url | default('https://bie.ala.org.au')}}
bie.searchPath={{ bie_search_path | default('/search') }}

# Disable UI components
disableOverviewMap={{ disable_map | default('true') }}
disableAlertLinks={{ disable_alerts | default('true') }}
disableLoggerLinks={{ disable_logger | default('true') }}

# Feeds config
rifcs.excludeBounds={{ rifcs_exclude_bounds | default('false') }}

# Logger URL
loggerURL={{ (logger_webservice_url | default(logger_url)) }}

# External services
alertsUrl={{ (alerts_url | default(alert_url)) | default('') }}
speciesListToolUrl={{ species_list_tool_url | default('https://lists.ala.org.au/speciesListItem/list/') }}

# GBIF base URL for webservices
gbifApiUrl={{ gbif_api_url | default('http://api.gbif.org/v1') }}

# GBIF Registration enables the Collectory to create and update organisations and datasets
# This mode of operation is only expected to be used by National Nodes running the ALA as a publishing gateway to GBIF.
# (i.e. where the ALA installation is not sourcing information from GBIF.org itself)
gbifRegistrationEnabled={{ gbif_registration_enabled | default('false') }}
gbifEndorsingNodeKey={{ gbif_endorsing_node_key | default('') }}
gbifInstallationKey={{ gbif_installation_key | default('') }}
gbifApiUser={{ gbif_api_user | default('') }}
gbifApiPassword={{ gbif_api_password | default('') }}
gbifExportUrlBase={{ gbif_export_url_base | default('') }}
useGbifDoi={{ gbif_use_doi | default('false') }}
gbifRegistrationDryRun={{ gbif_registration_dry_run | default('true') }}
gbifLicenceMappingUrl={{ gbif_licence_mapping_url | default('file:///data/ala-collectory/config/default-gbif-licence-mapping.json') }}
gbifOrphansPublisherID={{ gbif_orphans_publisher_id | default('') }}

# URL paths for archives
{'fraction_non_alphanumeric': 0.16604616530156366, 'fraction_numerical': 0.010093488872342186, 'mean_word_length': 7.178619756427605, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 7, 'https://': 14, 'lorem ipsum': 0, 'www.': 8, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '259453', 'n_tokens_mistral': 3995, 'n_tokens_neox': 3969, 'n_words': 681}