<commit_before>class Salmon < Formula
  desc "Transcript-level quantification from RNA-seq reads"
  homepage "https://github.com/COMBINE-lab/salmon"
  # tag "bioinformatics"

  url "https://github.com/COMBINE-lab/salmon/archive/v0.5.0.tar.gz"
  sha256 "390f6535966117ead358af98b60d5c2f51e26d4d98e019df6778cfee9046c875"

  head "https://github.com/COMBINE-lab/salmon.git"

  bottle do
    sha256 "b71a13cc8ef5a0be45c94645279b95703156cfd571485501c807aa994c9410e1" => :yosemite
    sha256 "02bf82b66b2cf967aa014203606e2292abd77e41ceaadeaff48273572152643d" => :mavericks
    sha256 "e94f189aaf588c89f9d371323f9b92b47cf54e3cccbdb8d8afabd81bdeca022b" => :mountain_lion
  end

  # See https://github.com/kingsfordgroup/sailfish/issues/74
  needs :cxx11

  depends_on "autoconf" => :build
  depends_on "automake" => :build
  depends_on "cmake" => :build
  depends_on "boost"<commit_msg>salmon 0.5.1<commit_after>class Salmon < Formula
  desc "Transcript-level quantification from RNA-seq reads"
  homepage "https://github.com/COMBINE-lab/salmon"
  # tag "bioinformatics"

  url "https://github.com/COMBINE-lab/salmon/archive/v0.5.1.tar.gz"
  sha256 "8d20f62a4e3ddf7135f89356bbcf5c78674ce085997041461e516f9ed32ffe5d"

  head "https://github.com/COMBINE-lab/salmon.git"

  bottle do
    sha256 "b71a13cc8ef5a0be45c94645279b95703156cfd571485501c807aa994c9410e1" => :yosemite
    sha256 "02bf82b66b2cf967aa014203606e2292abd77e41ceaadeaff48273572152643d" => :mavericks
    sha256 "e94f189aaf588c89f9d371323f9b92b47cf54e3cccbdb8d8afabd81bdeca022b" => :mountain_lion
  end

  # See https://github.com/kingsfordgroup/sailfish/issues/74
  needs :cxx11

  depends_on "autoconf" => :build
  depends_on "automake" => :build
  depends_on "cmake" => :build
  depends_on "boost"
{'fraction_non_alphanumeric': 0.10256410256410256, 'fraction_numerical': 0.2056980056980057, 'mean_word_length': 5.503703703703704, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 15, 'https://': 8, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6215363', 'n_tokens_mistral': 964, 'n_tokens_neox': 768, 'n_words': 92}