<commit_before># ARTED: Ab-initio Real-Time Electron Dynamics Simulator

ARTED (Ab-initio Real-Time Electron Dynamics simulator) is an open-source
computer codes for first-principles calculations of electron dynamics and
light-matter interactions [1]. It is based on time-dependent density functional theory
solving time-dependent Kohn-Sham equation in real time using pseudopotentials
and real-space grid representation.

ARTED has been developed in such a way that it runs
optimally in the following supercomputer platforms:

- K-computer
- Fujitsu FX100 supercomputer system
- Linux PC Cluster with x86-64 CPU
- Linux PC Cluster with Intel Xeon Phi (Knights Corner) [2]

ARTED has been developed by ARTED developers with support from
Center for Computational Sciences, University of Tsukuba.

### Reference

1. <NAME>, and <NAME>: "Maxwell + TDDFT multi-scale simulation for laser-matter interaction", JSST 2013 International Conference on Simulation Technology, 2013.
2. <NAME>, <NAME>, <NAME>, and <NAME>: "Electron Dynamics Simulation with Time-Dependent Density Functional Theory on Large Scale Symmetric Mode Xeon Phi Cluster", The 17th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC2016), 2016.


## Build

We use [CMake](https://cmake.org/) cross-platform build tools.

CMake detects the below configurations automatically,

- MPI Fortran/C compiler
- OpenMP flag
- LAPACK(/BLAS) libraries

### for your computer

    $ ./build
    or
    $ mkdir build_dir
    $ cd build_dir
    $ cmake .. && make

### for COMA at CCS, University of Tsukuba

    $ ./build -t sc intel avx knc
    or
    $ mkdir build_dir
    $ cd builld_dir
    $ cmake -D CMAKE_TOOLCHAIN_FILE=intel-knc .. && make
    $ cmake -D CMAKE_TOOLCHAIN_FILE=intel-avx .. && make

### for K-computer at RIKEN AICS

    $ ./build -t sc fujitsu k
    or
    $ mkdir build_dir
    $ cd builld_dir
    $ cmake -D CMAKE_TOOLCHAIN_FILE=fujitsu-k .. && make

### for FX100 system at Nagoya University

    $ ./built fujitsu fx100
    or
    $ mkdir build_dir
    $ cd builld_dir
    $ cmake -D CMAKE_TOOLCHAIN_FILE=fujitsu-fx100 .. && make

### Generic version (GNU compiler)

    $ ./built gnu generic
    or
    $ mkdir build_dir
    $ cd builld_dir
    $ cmake -D CMAKE_TOOLCHAIN_FILE=gnu-generic .. && make


## Execution/Simulation

Please read to jobscript directory files.

    $ mpirun -np $NUM_MPI_PROCS ./bin/ARTED_sc.cpu < ./data/input_sc.dat

<commit_msg>Fixed minor typos in README.md.<commit_after># ARTED: Ab-initio Real-Time Electron Dynamics Simulator

ARTED (Ab-initio Real-Time Electron Dynamics simulator) is an open-source
computer codes for first-principles calculations of electron dynamics and
light-matter interactions [1]. It is based on time-dependent density functional theory
solving time-dependent Kohn-Sham equation in real time using pseudopotentials
and real-space grid representation.

ARTED has been developed in such a way that it runs
optimally in the following supercomputer platforms:

- K-computer
- Fujitsu FX100 supercomputer system
- Linux PC Cluster with x86-64 CPU
- Linux PC Cluster with Intel Xeon Phi (Knights Corner) [2]

ARTED has been developed by ARTED developers with support from
Center for Computational Sciences, University of Tsukuba.

### Reference

1. <NAME>, and <NAME>: "Maxwell + TDDFT multi-scale simulation for laser-matter interaction", JSST 2013 International Conference on Simulation Technology, 2013.
2. <NAME>, <NAME>, <NAME>, and <NAME>: "Electron Dynamics Simulation with Time-Dependent Density Functional Theory on Large Scale Symmetric Mode Xeon Phi Cluster", The 17th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC2016), 2016.


## Build

We use [CMake](https://cmake.org/) cross-platform build tools.

CMake detects the below configurations automatically,

- MPI Fortran/C compiler
- OpenMP flag
- LAPACK(/BLAS) libraries

### for your computer

    $ ./build
    or
    $ mkdir build_dir
    $ cd build_dir
    $ cmake .. && make

### for COMA at CCS, University of Tsukuba

    $ ./build -t sc intel avx knc
    or
    $ mkdir build_dir
    $ cd builld_dir
    $ cmake -D CMAKE_TOOLCHAIN_FILE=intel-knc .. && make
    $ cmake -D CMAKE_TOOLCHAIN_FILE=intel-avx .. && make

### for K-computer at RIKEN AICS

    $ ./build -t sc fujitsu k
    or
    $ mkdir build_dir
    $ cd build_dir
    $ cmake -D CMAKE_TOOLCHAIN_FILE=fujitsu-k .. && make

### for FX100 system at Nagoya University

    $ ./build fujitsu fx100
    or
    $ mkdir build_dir
    $ cd build_dir
    $ cmake -D CMAKE_TOOLCHAIN_FILE=fujitsu-fx100 .. && make

### Generic version (GNU compiler)

    $ ./build gnu generic
    or
    $ mkdir build_dir
    $ cd build_dir
    $ cmake -D CMAKE_TOOLCHAIN_FILE=gnu-generic .. && make


## Execution/Simulation

Please read to jobscript directory files.

    $ mpirun -np $NUM_MPI_PROCS ./bin/ARTED_sc.cpu < ./data/input_sc.dat


{'fraction_non_alphanumeric': 0.08147702187437286, 'fraction_numerical': 0.01525185631145896, 'mean_word_length': 3.486048604860486, 'pattern_counts': {'":': 0, '<': 17, '<?xml version=': 0, '>': 15, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7261134', 'n_tokens_mistral': 1675, 'n_tokens_neox': 1491, 'n_words': 570}