<commit_before># RSEM transcript alignment

RSEM homepage:

http://deweylab.biostat.wisc.edu/rsem/

prepare-reference help:

http://deweylab.biostat.wisc.edu/rsem/rsem-prepare-reference.html<commit_msg>Update trancsript_align_RSEM.md<commit_after># RSEM transcript alignment

RSEM homepage:

http://deweylab.biostat.wisc.edu/rsem/

RSEM paper:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3163565/

prepare-reference help:

http://deweylab.biostat.wisc.edu/rsem/rsem-prepare-reference.html
{'fraction_non_alphanumeric': 0.1329243353783231, 'fraction_numerical': 0.014314928425357873, 'mean_word_length': 5.125, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 1, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5979441', 'n_tokens_mistral': 213, 'n_tokens_neox': 190, 'n_words': 23}