<commit_before>INIFILE	settings/include/hmf_settings.ini

PRESTATS	yes
MAPPING	yes
POSTSTATS	yes
EXONCALLCOV	no
INDELREALIGNMENT	yes
BASEQUALITYRECAL	yes

VARIANT_CALLING	no

SOMATIC_VARIANTS	yes
SOMVAR_ANNOTATE	yes
SOMVAR_STRELKA	yes
SOMVAR_VARSCAN	yes
SOMVAR_FREEBAYES	yes
SOMVAR_MUTECT	yes

STRELKA_PATH	/data/tools/strelka_v1.0.14
STRELKA_INI	strelka_config_bwa_genome.ini

COPY_NUMBER	no

SV_CALLING	no
˚
BAF	no
CALLABLE_LOCI	no
KINSHIP	yes
GENDER	no
FINALIZE	yes<commit_msg>Oops, typo<commit_after>INIFILE	settings/include/hmf_settings.ini

PRESTATS	yes
MAPPING	yes
POSTSTATS	yes
EXONCALLCOV	no
INDELREALIGNMENT	yes
BASEQUALITYRECAL	yes

VARIANT_CALLING	no

SOMATIC_VARIANTS	yes
SOMVAR_ANNOTATE	yes
SOMVAR_STRELKA	yes
SOMVAR_VARSCAN	yes
SOMVAR_FREEBAYES	yes
SOMVAR_MUTECT	yes

STRELKA_PATH	/data/tools/strelka_v1.0.14
STRELKA_INI	strelka_config_bwa_genome.ini

COPY_NUMBER	no

SV_CALLING	no

BAF	no
CALLABLE_LOCI	no
KINSHIP	yes
GENDER	no
FINALIZE	yes
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{'dir': 'git-commits-cleaned', 'id': '7200510', 'n_tokens_mistral': 482, 'n_tokens_neox': 464, 'n_words': 93}