<commit_before># This document is a configuration file identifying binary libraries to list
# in the LOCI plugins configuration dialog's Libraries tab. Edit with caution.

# core libraries

[Java]
type = Core library
class = java.lang.System
version = javaVersion
url = http://java.sun.com/
license = Varies
notes = Core Java library

[ImageJ]
type = Core library
class = ij.ImageJ
url = http://rsb.info.nih.gov/ij/
license = Public domain
notes = Core ImageJ library

[Java3D]
type = Core library
class = javax.vecmath.Point3d
url = https://java3d.dev.java.net/
license = GPL
notes = Not used; listed for informational purposes only.

[Jython]
type = Core library
class = org.python.util.PythonInterpreter
url = http://www.jython.org/
license = BSD
notes = Not used; listed for informational purposes only.

[MATLAB]
type = Core library
class = com.mathworks.jmi.Matlab
version = matlabVersion
url = http://www.mathworks.com/products/matlab/
license = Commercial
notes = Not used; listed for informational purposes only.
        Note that for MATLAB to be successfully detected here,
        ImageJ must be launched from within the MATLAB environment.

# native libraries

[QuickTime for Java]
type = Native library
class = quicktime.QTSession
version = qtVersion
url = http://www.apple.com/quicktime/
license = Commercial
notes = Bio-Formats has two modes of operation for QuickTime movies:\n
        1) QTJava mode requires the QuickTime for Java library to be
        installed.\n
        2) Native mode works on systems with no QuickTime (e.g., Linux).\n
        \n
        Using QTJava mode adds or improves support for the following
        codecs:\n
        1) [iraw] Intel YUV Uncompressed: enables write\n
        2) [rle] Animation (run length encoded RGB):
        improves read, enables write\n
        3) [rpza] Apple Video 16 bit "road pizza": improves read\n
        4) [cvid] Cinepak: enables read and write\n
        5) [svq1] Sorenson Video: enables read and write\n
        6) [svq3] Sorenson Video 3: enables read and write\n
        7) [mp4v] MPEG-4: enables read and write\n
        8) [h263] H.263: enables read and write\n
        \n
        You can toggle which mode is used
        in the Formats tab's "QuickTime" entry.

[JAI Image I/O Tools - native codecs]
type = Native library
class = com.sun.media.imageioimpl.plugins.jpeg.CLibJPEGImageReaderSpi
version = clibIIOVersion
url = https://jai-imageio.dev.java.net/
license = BSD
notes = Used by Bio-Formats for lossless JPEG support in DICOM.

[Nikon ND2 plugin]
type = Native library
class = ND_to_Image6D
url = http://rsb.info.nih.gov/ij/plugins/nd2-reader.html
license = Commercial
notes = Optional plugin. If you have Nikon's ND2 plugin installed, you can
        configure Bio-Formats to use it instead of its native ND2 support
        in the Formats tab's "Nikon ND2" entry.

# ImageJ plugins

[LOCI plugins]
type = ImageJ plugin
class = loci.plugins.About
version = bfVersion
url = http://www.loci.wisc.edu/bio-formats/imagej
license = GPL
notes = LOCI Plugins for ImageJ: a collection of ImageJ plugins including
        the Bio-Formats Importer, Bio-Formats Exporter,
        Bio-Formats Macro Extensions, Data Browser,
        Stack Colorizer and Stack Slicer.

[OME plugins]
type = ImageJ plugin
class = loci.plugins.ome.About
version = omeVersion
url = http://ome-xml.org/wiki/OmePlugins
license = GPL
notes = OME Plugins for ImageJ: a collection of ImageJ plugins including
        the Download from OME and Upload to OME plugins.

[Image5D]
type = ImageJ plugin
class = i5d.Image5D
url = http://rsb.info.nih.gov/ij/plugins/image5d.html
license = Public domain
notes = Optional plugin. If you have Image5D installed, the Bio-Formats
        Importer plugin can use Image5D to display your image stacks.

[View5D]
type = ImageJ plugin
class = view5d.View5D_
url = http://www.nanoimaging.de/View5D/
license = GPL
notes = Optional plugin. If you have View5D installed, the Bio-Formats
        Importer plugin can use View5D to display your image stacks.
<commit_msg>Fixing links to imagej plugins<commit_after># This document is a configuration file identifying binary libraries to list
# in the LOCI plugins configuration dialog's Libraries tab. Edit with caution.

# core libraries

[Java]
type = Core library
class = java.lang.System
version = javaVersion
url = http://java.sun.com/
license = Varies
notes = Core Java library

[ImageJ]
type = Core library
class = ij.ImageJ
url = http://rsb.info.nih.gov/ij/
license = Public domain
notes = Core ImageJ library

[Java3D]
type = Core library
class = javax.vecmath.Point3d
url = https://java3d.dev.java.net/
license = GPL
notes = Not used; listed for informational purposes only.

[Jython]
type = Core library
class = org.python.util.PythonInterpreter
url = http://www.jython.org/
license = BSD
notes = Not used; listed for informational purposes only.

[MATLAB]
type = Core library
class = com.mathworks.jmi.Matlab
version = matlabVersion
url = http://www.mathworks.com/products/matlab/
license = Commercial
notes = Not used; listed for informational purposes only.
        Note that for MATLAB to be successfully detected here,
        ImageJ must be launched from within the MATLAB environment.

# native libraries

[QuickTime for Java]
type = Native library
class = quicktime.QTSession
version = qtVersion
url = http://www.apple.com/quicktime/
license = Commercial
notes = Bio-Formats has two modes of operation for QuickTime movies:\n
        1) QTJava mode requires the QuickTime for Java library to be
        installed.\n
        2) Native mode works on systems with no QuickTime (e.g., Linux).\n
        \n
        Using QTJava mode adds or improves support for the following
        codecs:\n
        1) [iraw] Intel YUV Uncompressed: enables write\n
        2) [rle] Animation (run length encoded RGB):
        improves read, enables write\n
        3) [rpza] Apple Video 16 bit "road pizza": improves read\n
        4) [cvid] Cinepak: enables read and write\n
        5) [svq1] Sorenson Video: enables read and write\n
        6) [svq3] Sorenson Video 3: enables read and write\n
        7) [mp4v] MPEG-4: enables read and write\n
        8) [h263] H.263: enables read and write\n
        \n
        You can toggle which mode is used
        in the Formats tab's "QuickTime" entry.

[JAI Image I/O Tools - native codecs]
type = Native library
class = com.sun.media.imageioimpl.plugins.jpeg.CLibJPEGImageReaderSpi
version = clibIIOVersion
url = https://jai-imageio.dev.java.net/
license = BSD
notes = Used by Bio-Formats for lossless JPEG support in DICOM.

[Nikon ND2 plugin]
type = Native library
class = ND_to_Image6D
url = http://rsb.info.nih.gov/ij/plugins/nd2-reader.html
license = Commercial
notes = Optional plugin. If you have Nikon's ND2 plugin installed, you can
        configure Bio-Formats to use it instead of its native ND2 support
        in the Formats tab's "Nikon ND2" entry.

# ImageJ plugins

[LOCI plugins]
type = ImageJ plugin
class = loci.plugins.About
version = bfVersion
url = http://www.openmicroscopy.org/site/support/bio-formats/users/imagej/index.html
license = GPL
notes = LOCI Plugins for ImageJ: a collection of ImageJ plugins including
        the Bio-Formats Importer, Bio-Formats Exporter,
        Bio-Formats Macro Extensions, Data Browser,
        Stack Colorizer and Stack Slicer.

[OME plugins]
type = ImageJ plugin
class = loci.plugins.ome.About
version = omeVersion
url = http://www.openmicroscopy.org/site/products/bio-formats/downloads
license = GPL
notes = OME Plugins for ImageJ: a collection of ImageJ plugins including
        the Download from OME and Upload to OME plugins.

[Image5D]
type = ImageJ plugin
class = i5d.Image5D
url = http://rsb.info.nih.gov/ij/plugins/image5d.html
license = Public domain
notes = Optional plugin. If you have Image5D installed, the Bio-Formats
        Importer plugin can use Image5D to display your image stacks.

[View5D]
type = ImageJ plugin
class = view5d.View5D_
url = http://www.nanoimaging.de/View5D/
license = GPL
notes = Optional plugin. If you have View5D installed, the Bio-Formats
        Importer plugin can use View5D to display your image stacks.

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{'dir': 'git-commits-cleaned', 'id': '415895', 'n_tokens_mistral': 2554, 'n_tokens_neox': 2467, 'n_words': 954}