<commit_before>##### Define db and objectstore resources needed for ModMine build #####

os.query.max-time=1000000000
os.query.max-limit=100000
os.query.max-offset=100000000
os.queue-len=100

# production database #

os.production.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.production.db=db.production
os.production.model=genomic
os.production.noNotXml=true
os.production.logTable=executelog
os.production.minBagTableSize=1100

db.production.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.production.datasource.dataSourceName=db.production
#db.production.datasource.serverName=server_name
#db.production.datasource.databaseName=db_name
#db.production.datasource.user=modmine
#db.production.datasource.password=<PASSWORD>
db.production.datasource.maxConnections=50
db.production.driver=org.postgresql.Driver
db.production.platform=PostgreSQL

osw.production.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.production.os=os.production


#integration.production.class=org.intermine.dataloader.IntegrationWriterFirstSourceImpl
integration.production.class=org.intermine.dataloader.IntegrationWriterDataTrackingImpl
integration.production.osw=osw.production
integration.production.datatrackerMaxSize=100000
integration.production.datatrackerCommitSize=50000


# flybase source database

db.flybase.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.flybase.datasource.dataSourceName=db.flybase
#db.flybase.datasource.serverName=server_name
#db.flybase.datasource.databaseName=flybase_db_name
#db.flybase.datasource.user=user
#db.flybase.datasource.password=password
db.flybase.datasource.maxConnections=10
db.flybase.driver=org.postgresql.Driver
db.flybase.platform=PostgreSQL

# wormbase source database

db.wormbase.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.wormbase.datasource.dataSourceName=db.wormbase
#db.wormbase.datasource.serverName=server_name
#db.wormbase.datasource.databaseName=wormbase_db_name
#db.wormbase.datasource.user=user
#db.wormbase.datasource.password=password
db.wormbase.datasource.maxConnections=10
db.wormbase.driver=org.postgresql.Driver
db.wormbase.platform=PostgreSQL


##### ITEMS DATABASES #####

# global target (tgt) items objectstore

db.common-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.common-tgt-items.datasource.dataSourceName=db.common-tgt-items
#properties to set in $HOME/modmine.properties or similar:
# db.common-tgt-items.datasource.serverName=server_name
# db.common-tgt-items.datasource.databaseName=db_name
# db.common-tgt-items.datasource.user=user
# db.common-tgt-items.datasource.password=password
db.common-tgt-items.datasource.maxConnections=10
db.common-tgt-items.driver=org.postgresql.Driver
db.common-tgt-items.platform=PostgreSQL

os.common-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.common-tgt-items-std.db=db.common-tgt-items
os.common-tgt-items-std.missingTables=InterMineObject
os.common-tgt-items-std.model=fulldata
os.common-tgt-items-std.minBagTableSize=10000

os.common-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.common-tgt-items.os=os.common-tgt-items-std
os.common-tgt-items.model=fulldata

osw.common-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.common-tgt-items.os=os.common-tgt-items-std

os.common-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.common-translated-std.model=genomic
os.common-translated-std.os=os.common-tgt-items
os.common-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.common-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.common-translated.model=genomic
os.common-translated.os=os.common-translated-std

# global source (src) items objectstore

db.common-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.common-src-items.datasource.dataSourceName=db.common-src-items
#properties to set in $HOME/modmine.properties or similar:
# db.common-src-items.datasource.serverName=server_name
# db.common-src-items.datasource.databaseName=db_name
# db.common-src-items.datasource.user=user
# db.common-src-items.datasource.password=password
db.common-src-items.datasource.maxConnections=10
db.common-src-items.driver=org.postgresql.Driver
db.common-src-items.platform=PostgreSQL

os.common-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.common-src-items-std.db=db.common-src-items
os.common-src-items-std.missingTables=InterMineObject
os.common-src-items-std.model=fulldata
os.common-src-items-std.minBagTableSize=10000

os.common-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.common-src-items.os=os.common-src-items-std
os.common-src-items.model=fulldata

osw.common-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.common-src-items.os=os.common-src-items-std

integration.production.datatrackerMissingClasses=Relation<commit_msg>Don't track Sequence objects in modmine.<commit_after>##### Define db and objectstore resources needed for ModMine build #####

os.query.max-time=1000000000
os.query.max-limit=100000
os.query.max-offset=100000000
os.queue-len=100

# production database #

os.production.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.production.db=db.production
os.production.model=genomic
os.production.noNotXml=true
os.production.logTable=executelog
os.production.minBagTableSize=1100

db.production.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.production.datasource.dataSourceName=db.production
#db.production.datasource.serverName=server_name
#db.production.datasource.databaseName=db_name
#db.production.datasource.user=modmine
#db.production.datasource.password=<PASSWORD>
db.production.datasource.maxConnections=50
db.production.driver=org.postgresql.Driver
db.production.platform=PostgreSQL

osw.production.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.production.os=os.production


#integration.production.class=org.intermine.dataloader.IntegrationWriterFirstSourceImpl
integration.production.class=org.intermine.dataloader.IntegrationWriterDataTrackingImpl
integration.production.osw=osw.production
integration.production.datatrackerMaxSize=100000
integration.production.datatrackerCommitSize=50000


# flybase source database

db.flybase.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.flybase.datasource.dataSourceName=db.flybase
#db.flybase.datasource.serverName=server_name
#db.flybase.datasource.databaseName=flybase_db_name
#db.flybase.datasource.user=user
#db.flybase.datasource.password=password
db.flybase.datasource.maxConnections=10
db.flybase.driver=org.postgresql.Driver
db.flybase.platform=PostgreSQL

# wormbase source database

db.wormbase.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.wormbase.datasource.dataSourceName=db.wormbase
#db.wormbase.datasource.serverName=server_name
#db.wormbase.datasource.databaseName=wormbase_db_name
#db.wormbase.datasource.user=user
#db.wormbase.datasource.password=password
db.wormbase.datasource.maxConnections=10
db.wormbase.driver=org.postgresql.Driver
db.wormbase.platform=PostgreSQL


##### ITEMS DATABASES #####

# global target (tgt) items objectstore

db.common-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.common-tgt-items.datasource.dataSourceName=db.common-tgt-items
#properties to set in $HOME/modmine.properties or similar:
# db.common-tgt-items.datasource.serverName=server_name
# db.common-tgt-items.datasource.databaseName=db_name
# db.common-tgt-items.datasource.user=user
# db.common-tgt-items.datasource.password=password
db.common-tgt-items.datasource.maxConnections=10
db.common-tgt-items.driver=org.postgresql.Driver
db.common-tgt-items.platform=PostgreSQL

os.common-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.common-tgt-items-std.db=db.common-tgt-items
os.common-tgt-items-std.missingTables=InterMineObject
os.common-tgt-items-std.model=fulldata
os.common-tgt-items-std.minBagTableSize=10000

os.common-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.common-tgt-items.os=os.common-tgt-items-std
os.common-tgt-items.model=fulldata

osw.common-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.common-tgt-items.os=os.common-tgt-items-std

os.common-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.common-translated-std.model=genomic
os.common-translated-std.os=os.common-tgt-items
os.common-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.common-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.common-translated.model=genomic
os.common-translated.os=os.common-translated-std

# global source (src) items objectstore

db.common-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.common-src-items.datasource.dataSourceName=db.common-src-items
#properties to set in $HOME/modmine.properties or similar:
# db.common-src-items.datasource.serverName=server_name
# db.common-src-items.datasource.databaseName=db_name
# db.common-src-items.datasource.user=user
# db.common-src-items.datasource.password=password
db.common-src-items.datasource.maxConnections=10
db.common-src-items.driver=org.postgresql.Driver
db.common-src-items.platform=PostgreSQL

os.common-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.common-src-items-std.db=db.common-src-items
os.common-src-items-std.missingTables=InterMineObject
os.common-src-items-std.model=fulldata
os.common-src-items-std.minBagTableSize=10000

os.common-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.common-src-items.os=os.common-src-items-std
os.common-src-items.model=fulldata

osw.common-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.common-src-items.os=os.common-src-items-std

integration.production.datatrackerMissingClasses=Relation,Sequence
{'fraction_non_alphanumeric': 0.11322393822393823, 'fraction_numerical': 0.014092664092664093, 'mean_word_length': 7.444172779136104, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 4, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '362382', 'n_tokens_mistral': 3720, 'n_tokens_neox': 3499, 'n_words': 272}