<commit_before>FROM ubuntu:latest
MAINTAINER a504082002 <<EMAIL>>

# Install dependencies
RUN apt-get update -qq &&\
	apt-get install -yq git\
						libdatetime-perl\
						libxml-simple-perl\
						libdigest-md5-perl\
						bioperl

# clone prokka
RUN git clone https://github.com/tseemann/prokka.git &&\
	prokka/bin/prokka --setupdb

# set environment variables
RUN PATH=$PATH:prokka/bin

# set data mounting point
RUN mkdir /data

CMD ["/bin/bash"]
<commit_msg>fix environment variables<commit_after>FROM ubuntu:latest
MAINTAINER a504082002 <<EMAIL>>

# Install dependencies
RUN apt-get update -qq &&\
	apt-get install -yq git\
						libdatetime-perl\
						libxml-simple-perl\
						libdigest-md5-perl\
						bioperl

# clone prokka
RUN git clone https://github.com/tseemann/prokka.git &&\
	prokka/bin/prokka --setupdb

# set environment variables
RUN PATH=$PATH:/prokka/bin

# set data mounting point
RUN mkdir /data

CMD ["/bin/bash"]

{'fraction_non_alphanumeric': 0.11370882040382571, 'fraction_numerical': 0.021253985122210415, 'mean_word_length': 3.3211009174311927, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 7, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2421143', 'n_tokens_mistral': 404, 'n_tokens_neox': 328, 'n_words': 84}