<commit_before>sudo: required

language: java

jdk: openjdk8

services:
  - docker
env:
  - NXF_VER=0.22.3
# safelist
branches:
   only:
     - master
install: 
    - git clone https://github.com/Galithil/NGI-RNAseq.git /tmp/NGI-RNAseq
    - cd /tmp/NGI-RNAseq/tests
    - wget -qO- get.nextflow.io | bash
    - sudo ln -s /tmp/NGI-RNAseq/tests/nextflow /usr/local/bin/nextflow

#script: "./nextflow run SciLifeLab/NGI-RNAseq -profile docker_test --reads '/tmp/ngi-rna_test_set/*.fastq.gz'"
script: "./docker_test_hisat.sh"<commit_msg>Updated Travis config to work with host repo (not just @Galithil)<commit_after>sudo: required

language: java

jdk: openjdk8

services:
  - docker
env:
  - NXF_VER=0.22.3
# safelist
branches:
   only:
     - master
install:
    - mkdir /tmp/nextflow
    - cd /tmp/nextflow
    - wget -qO- get.nextflow.io | bash
    - sudo ln -s /tmp/nextflow/nextflow /usr/local/bin/nextflow
    - cd ${TRAVIS_BUILD_DIR}/tests/

script: "./docker_test_hisat.sh"
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{'dir': 'git-commits-cleaned', 'id': '1938608', 'n_tokens_mistral': 418, 'n_tokens_neox': 388, 'n_words': 81}