<commit_before><project type="bio">
  <property name="target.model" value="genomic"/>
  <property name="source.location" location="../bio/sources/"/>
  <property name="common.os.prefix" value="common"/>
  <property name="intermine.properties.file" value="fishmine.properties"/>
  <property name="default.intermine.properties.file" location="../default.intermine.integrate.properties"/>
  <sources>

    <source name="zfin-identifiers" type="zfin-identifiers">
      <property name="src.data.dir" location="/shared/data/zfin/current"/>
    </source>
 
    <source name="uniprot" type="uniprot">
      <property name="uniprot.organisms" value="7955"/>
      <property name="src.data.dir" location="/shared/data/uniprot/14.9/split"/>
      <property name="createinterpro" value="true"/>
    </source>

    <source name="uniprot-fasta" type="fasta">
      <property name="fasta.taxonId" value="7955"/>
      <property name="fasta.className" value="org.intermine.model.bio.Protein"/>
      <property name="fasta.classAttribute" value="primaryAccession"/>
      <property name="fasta.dataSetTitle" value="UniProt data set"/>
      <property name="fasta.dataSourceName" value="UniProt"/>
      <property name="src.data.dir" location="/shared/data/uniprot/current"/>
      <property name="fasta.includes" value="uniprot_sprot_varsplic.fasta"/>
      <property name="fasta.sequenceType" value="protein" />
      <property name="fasta.loaderClassName" 
                value="org.intermine.bio.dataconversion.UniProtFastaLoaderTask"/>
    </source>

    <source name="uniprot-keywords" type="uniprot-keywords">
      <property name="src.data.dir" location="/shared/data/uniprot/current"/>
      <property name="src.data.dir.includes" value="keywlist.xml"/>
    </source>

   <source name="interpro" type="interpro">      
      <property name="src.data.dir" location="/shared/data/interpro/current"/>
    </source>

<!--
    <source name="ensembl" type="ensembl"> 
     <property name="src.data.dir" location="/shared/data/ensembl/current"/> 
    </source> 
-->
    <source name="psi-intact" type="psi">
      <property name="src.data.dir" location="/shared/data/psi/intact/2009-02-24"/>
    </source>

    <source name="biogrid" type="biogrid">
      <property name="src.data.dir" location="/shared/data/biogrid/2009-02-25"/>
      <property name="src.data.dir.includes" value="*psi25.xml"/>
    </source>

    <source name="pdb" type="pdb"><commit_msg>biogrid doesn't have zfin data<commit_after><project type="bio">
  <property name="target.model" value="genomic"/>
  <property name="source.location" location="../bio/sources/"/>
  <property name="common.os.prefix" value="common"/>
  <property name="intermine.properties.file" value="fishmine.properties"/>
  <property name="default.intermine.properties.file" location="../default.intermine.integrate.properties"/>
  <sources>

    <source name="zfin-identifiers" type="zfin-identifiers">
      <property name="src.data.dir" location="/shared/data/zfin/current"/>
    </source>
 
    <source name="uniprot" type="uniprot">
      <property name="uniprot.organisms" value="7955"/>
      <property name="src.data.dir" location="/shared/data/uniprot/14.9/split"/>
      <property name="createinterpro" value="true"/>
    </source>

    <source name="uniprot-fasta" type="fasta">
      <property name="fasta.taxonId" value="7955"/>
      <property name="fasta.className" value="org.intermine.model.bio.Protein"/>
      <property name="fasta.classAttribute" value="primaryAccession"/>
      <property name="fasta.dataSetTitle" value="UniProt data set"/>
      <property name="fasta.dataSourceName" value="UniProt"/>
      <property name="src.data.dir" location="/shared/data/uniprot/current"/>
      <property name="fasta.includes" value="uniprot_sprot_varsplic.fasta"/>
      <property name="fasta.sequenceType" value="protein" />
      <property name="fasta.loaderClassName" 
                value="org.intermine.bio.dataconversion.UniProtFastaLoaderTask"/>
    </source>

    <source name="uniprot-keywords" type="uniprot-keywords">
      <property name="src.data.dir" location="/shared/data/uniprot/current"/>
      <property name="src.data.dir.includes" value="keywlist.xml"/>
    </source>

   <source name="interpro" type="interpro">      
      <property name="src.data.dir" location="/shared/data/interpro/current"/>
    </source>

<!--
    <source name="ensembl" type="ensembl"> 
     <property name="src.data.dir" location="/shared/data/ensembl/current"/> 
    </source> 
-->
    <source name="psi-intact" type="psi">
      <property name="src.data.dir" location="/shared/data/psi/intact/2009-02-24"/>
    </source>

    <source name="pdb" type="pdb">
{'fraction_non_alphanumeric': 0.18148936170212765, 'fraction_numerical': 0.010212765957446808, 'mean_word_length': 3.9536354056902003, 'pattern_counts': {'":': 0, '<': 89, '<?xml version=': 0, '>': 89, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 3}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1029516', 'n_tokens_mistral': 1533, 'n_tokens_neox': 1466, 'n_words': 223}