<commit_before>class Anvio < Formula
  include Language::Python::Virtualenv
  desc "Analysis and visualization platform for ‘omics data."
  homepage "http://merenlab.org/projects/anvio/"
  url "https://files.pythonhosted.org/packages/1a/f4/e75b895b3348ec7d0d21e220735d0f9dd0ea2e67ef9a6ebb9c92bd1d7593/anvio-2.4.0.tar.gz"
  sha256 "0f2b3dfe92dc94f097bc9690f4d3e5d9b9320621404fc9cf7c752827e9d09e93"
  head "https://github.com/merenlab/anvio.git"

  bottle do
    sha256 "cde9cf31f18b539d22d1da6789c70c78efdbea2f183490ce787b9039cdc5d018" => :sierra
    sha256 "09ee154517ea8dc43251c2163919dbe769af040e7369a159b7ddda89599e24fe" => :el_capitan
    sha256 "b18238c91929cd48aea6fbfba7a381a2c14ed267e6feadccd67973403a023566" => :yosemite
  end

  # doi "10.7717/peerj.1319"
  # tag "bioinformatics"

  depends_on :python3
  depends_on :fortran
  depends_on "prodigal"
  depends_on "hmmer"
  depends_on "sqlite"
  depends_on "gsl"
  depends_on "hdf5"
  depends_on "diamond"
  depends_on "mcl"
  depends_on "muscle"
  depends_on "blast"
  depends_on "numpy"
  depends_on "scipy"

  resource "bottle" do
    url "https://files.pythonhosted.org/packages/a1/f6/0db23aeeb40c9a7c5d226b1f70ce63822c567178eee5b623bca3e0cc3bef/bottle-0.12.11.tar.gz"<commit_msg>anvio: update 2.4.0 bottle for Linuxbrew.<commit_after>class Anvio < Formula
  include Language::Python::Virtualenv
  desc "Analysis and visualization platform for ‘omics data."
  homepage "http://merenlab.org/projects/anvio/"
  url "https://files.pythonhosted.org/packages/1a/f4/e75b895b3348ec7d0d21e220735d0f9dd0ea2e67ef9a6ebb9c92bd1d7593/anvio-2.4.0.tar.gz"
  sha256 "0f2b3dfe92dc94f097bc9690f4d3e5d9b9320621404fc9cf7c752827e9d09e93"
  head "https://github.com/merenlab/anvio.git"

  bottle do
    sha256 "cde9cf31f18b539d22d1da6789c70c78efdbea2f183490ce787b9039cdc5d018" => :sierra
    sha256 "09ee154517ea8dc43251c2163919dbe769af040e7369a159b7ddda89599e24fe" => :el_capitan
    sha256 "b18238c91929cd48aea6fbfba7a381a2c14ed267e6feadccd67973403a023566" => :yosemite
    sha256 "f53381891acfa75fc30778bc1cdd9fcc6b852ccd7557d0ebda344ceb93dc03a9" => :x86_64_linux
  end

  # doi "10.7717/peerj.1319"
  # tag "bioinformatics"

  depends_on :python3
  depends_on :fortran
  depends_on "prodigal"
  depends_on "hmmer"
  depends_on "sqlite"
  depends_on "gsl"
  depends_on "hdf5"
  depends_on "diamond"
  depends_on "mcl"
  depends_on "muscle"
  depends_on "blast"
  depends_on "numpy"
  depends_on "scipy"

  resource "bottle" do
    url "https://files.pythonhosted.org/packages/a1/f6/0db23aeeb40c9a7c5d226b1f70ce63822c567178eee5b623bca3e0cc3bef/bottle-0.12.11.tar.gz"
{'fraction_non_alphanumeric': 0.09237255653507091, 'fraction_numerical': 0.2169413568417018, 'mean_word_length': 5.744186046511628, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 10, 'https://': 6, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2687089', 'n_tokens_mistral': 1500, 'n_tokens_neox': 1252, 'n_words': 143}