<commit_before>from __future__ import print_function

import os
from distutils.core import setup
from setuptools import find_packages
try:
    from Cython.Build import cythonize
    import Cython.Distutils
    CYTHON=True
except ImportError:
    CYTHON=False
    print('CYTHON UNAVAILABLE')
try:
    import numpy
    NUMPY = True
except ImportError:
    NUMPY = False
    print('NUMPY NOT INSTALLED')

# allow setup.py to be run from any path
os.chdir(os.path.normpath(os.path.join(os.path.abspath(__file__), os.pardir)))

setup(
    name='pyquant-ms',
    version='0.1.43rc1',
    packages=find_packages(),
    scripts=['scripts/pyQuant'],
    entry_points={'console_scripts': ['pyQuant = pyquant.command_line:run_pyquant',]},
    install_requires = ['cython', 'numpy', 'scipy', 'patsy', 'pythomics', 'pandas', 'lxml', 'scikit-learn', 'simplejson'],
    include_package_data=True,
    description='A framework for the analysis of quantitative mass spectrometry data',
    url='http://www.github.com/pandeylab/pyquant',
    author='<NAME> <<EMAIL>>',
    classifiers=[
        'License :: OSI Approved :: MIT License',
        'Operating System :: OS Independent',
        'Programming Language :: Python',<commit_msg>Fix versions of scipy and pythomics<commit_after>from __future__ import print_function

import os
from distutils.core import setup
from setuptools import find_packages
try:
    from Cython.Build import cythonize
    import Cython.Distutils
    CYTHON=True
except ImportError:
    CYTHON=False
    print('CYTHON UNAVAILABLE')
try:
    import numpy
    NUMPY = True
except ImportError:
    NUMPY = False
    print('NUMPY NOT INSTALLED')

# allow setup.py to be run from any path
os.chdir(os.path.normpath(os.path.join(os.path.abspath(__file__), os.pardir)))

setup(
    name='pyquant-ms',
    version='0.1.43rc2',
    packages=find_packages(),
    scripts=['scripts/pyQuant'],
    entry_points={'console_scripts': ['pyQuant = pyquant.command_line:run_pyquant',]},
    install_requires = ['cython', 'numpy', 'scipy >= 0.18.*', 'patsy', 'pythomics >= 0.3.41', 'pandas', 'lxml', 'scikit-learn', 'simplejson'],
    include_package_data=True,
    description='A framework for the analysis of quantitative mass spectrometry data',
    url='http://www.github.com/pandeylab/pyquant',
    author='<NAME> <<EMAIL>>',
    classifiers=[
        'License :: OSI Approved :: MIT License',
        'Operating System :: OS Independent',
        'Programming Language :: Python',
{'fraction_non_alphanumeric': 0.12953995157384987, 'fraction_numerical': 0.006860371267150928, 'mean_word_length': 4.164583333333334, 'pattern_counts': {'":': 0, '<': 9, '<?xml version=': 0, '>': 11, 'https://': 0, 'lorem ipsum': 0, 'www.': 2, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7668602', 'n_tokens_mistral': 832, 'n_tokens_neox': 806, 'n_words': 194}