<commit_before>package:
  name: bioconvert
  version: "0.0.10"

source:
  url: https://pypi.python.org/packages/51/16/36baee3cf988d3f043e98341c43c05fd771f5dbeaef118ace23853e005d5/bioconvert-0.0.10.tar.gz
  md5: a7073c2b80712e0884c6414eea4dee24

build:
  skip: True # [py27]
  entry_points:
    - bioconvert=bioconvert.scripts.converter:main
    - bioconvert_init=bioconvert.scripts.init_convert:main
  number: 1

requirements:
  host:
    - python
    - setuptools
    - easydev >=0.9.36
    - colorlog
    - pandas
    - biopython
    - mappy
    - matplotlib
    - pyyaml
    - pysam

  run:
    - python
    - easydev >=0.9.36
    - colorlog
    - pandas
    - biopython
    - mappy
    - matplotlib
    - pyyaml
    - pysam
    - bamtools
    - bcftools
    - bedtools
    - bioawk
    - deeptools
    - dsrc # [not osx]
    - pbzip2
    - pigz
    - sambamba
    - samtools
    - seqtk
    - squizz

test:
  imports:
    - bioconvert
    - bioconvert.core
    - bioconvert.data
    - bioconvert.misc
    - bioconvert.scripts
    - bioconvert.simulator
    - bioconvert.validator

  commands:
    - MPLBACKEND=agg bioconvert --help
    - MPLBACKEND=agg bioconvert_init --help

extra:
  container:
    # needs libGL.so.1
    extended-base: true


about:
  home: http://bioconvert.readthedocs.io/
  license: BSD License
  summary: 'convert various bioinformatics formats'
  license_family: BSD
<commit_msg>update bioconvert to v0.2.0 (#10316)<commit_after>{% set name = "bioconvert" %}
{% set version = "0.2.0" %}
{% set md5 =  "c5720009c8d8acba208aa763f2a697c4" %}

package:
  name: {{ name }}
  version: {{ version }}

source:
  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
  md5: {{ md5 }}

build:
  skip: True # [py27]
  entry_points:
    - bioconvert=bioconvert.scripts.converter:main
    - bioconvert_init=bioconvert.scripts.init_convert:main
  number: 1

requirements:
  host:
    - python
    - setuptools
    - easydev >=0.9.36
    - colorlog
    - pandas
    - biopython
    - mappy
    - matplotlib
    - networkx
    - pyyaml
    - pysam
    - pyexcel
    - pyexcel-ods3
    - pyexcel-xls
    - xlrd

  run:
    - python
    - easydev >=0.9.36
    - colorlog
    - pandas
    - biopython
    - mappy
    - matplotlib
    - networkx
    - pyyaml
    - pysam
    - pyexcel
    - pyexcel-ods3
    - pyexcel-xls
    - xlrd
    - bamtools
    - bcftools
    - bedtools
    - bioawk
    - deeptools
    - dsrc
    - go ==1.10.3
    - pbzip2
    - pigz
    - plink
    - sambamba
    - samtools
    - seqtk
    - squizz
    - sra-tools
    - ucsc-bedgraphtobigwig
    - ucsc-bigwigtobedgraph
    - ucsc-fatotwobit
    - ucsc-twobittofa
    - wiggletools
    - sed
    - mawk


test:
  imports:
    - bioconvert
    - bioconvert.core
    - bioconvert.data
    - bioconvert.misc
    - bioconvert.scripts
    - bioconvert.simulator
    - bioconvert.validator

  commands:
    - MPLBACKEND=agg bioconvert --help
    - MPLBACKEND=agg bioconvert_init --help
    - MPLBACKEND=agg bioconvert_stats --help

extra:
  container:
    # needs libGL.so.1
    extended-base: true

about:
  home: http://bioconvert.readthedocs.io/
  license: GPL3
  summary: 'convert various bioinformatics formats'
  license_family: GPL

{'fraction_non_alphanumeric': 0.1082490033731984, 'fraction_numerical': 0.04201165286721865, 'mean_word_length': 2.0400745573159367, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 7, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7031173', 'n_tokens_mistral': 1370, 'n_tokens_neox': 1280, 'n_words': 224}