<commit_before>#!/usr/bin/env python
"""
Starts and runs a TagGD demultiplexing job. Type -h for help.
\n
See https://code.google.com/p/taggd/ for manual and the most recent source code.
\n
See http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0057521
for the peer-reviewed reference to the program.
"""

import os
import sys
import argparse
import taggd.io.barcode_utils as bu
import taggd.core.demultiplex_core_functions as core
import taggd.core.demultiplex_search_functions as srch<commit_msg>changed ref<commit_after>#!/usr/bin/env python
"""
Starts and runs a TagGD demultiplexing job. Type -h for help.
\n
See https://github.com/JoelSjostrand/taggd/wiki for manual and the most recent source code.
\n
See http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0057521
for the peer-reviewed reference to the program.
"""

import os
import sys
import argparse
import taggd.io.barcode_utils as bu
import taggd.core.demultiplex_core_functions as core
import taggd.core.demultiplex_search_functions as srch
{'fraction_non_alphanumeric': 0.0935390549662488, 'fraction_numerical': 0.03085824493731919, 'mean_word_length': 4.9314285714285715, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 2, 'lorem ipsum': 0, 'www.': 2, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2240527', 'n_tokens_mistral': 384, 'n_tokens_neox': 351, 'n_words': 104}