<commit_before>package uk.org.cinquin.mutinack.output;

import java.io.Serializable;
import java.util.HashSet;
import java.util.Set;

import javax.jdo.annotations.PersistenceCapable;
import javax.jdo.annotations.Persistent;

import uk.org.cinquin.final_annotation.Final;
import uk.org.cinquin.mutinack.DuplexDisagreement;
import uk.org.cinquin.mutinack.candidate_sequences.CandidateSequence;

@PersistenceCapable
public class LocationAnalysis implements Serializable {
	private static final long serialVersionUID = 622542608557547921L;

	public @Persistent CrossSampleLocationAnalysis crossSampleLocationAnalysis;
	public @Final @Persistent
	LocationExaminationResults locationStats;
	public @Final @Persistent Set<CandidateSequence> candidates = new HashSet<>();
	public @Final @Persistent Set<DuplexDisagreement> disagreements = new HashSet<>();

	public LocationAnalysis(CrossSampleLocationAnalysis crossSampleLocationAnalysis,
			LocationExaminationResults locationStats) {
		this.crossSampleLocationAnalysis = crossSampleLocationAnalysis;
		this.locationStats = locationStats;
	}

	public LocationAnalysis setCrossSampleLocationAnalysis(<commit_msg>Formatting.<commit_after>package uk.org.cinquin.mutinack.output;

import java.io.Serializable;
import java.util.HashSet;
import java.util.Set;

import javax.jdo.annotations.PersistenceCapable;
import javax.jdo.annotations.Persistent;

import uk.org.cinquin.final_annotation.Final;
import uk.org.cinquin.mutinack.DuplexDisagreement;
import uk.org.cinquin.mutinack.candidate_sequences.CandidateSequence;

@PersistenceCapable
public class LocationAnalysis implements Serializable {
	private static final long serialVersionUID = 622542608557547921L;

	public @Persistent CrossSampleLocationAnalysis crossSampleLocationAnalysis;
	public @Final @Persistent LocationExaminationResults locationStats;
	public @Final @Persistent Set<CandidateSequence> candidates = new HashSet<>();
	public @Final @Persistent Set<DuplexDisagreement> disagreements = new HashSet<>();

	public LocationAnalysis(CrossSampleLocationAnalysis crossSampleLocationAnalysis,
			LocationExaminationResults locationStats) {
		this.crossSampleLocationAnalysis = crossSampleLocationAnalysis;
		this.locationStats = locationStats;
	}

	public LocationAnalysis setCrossSampleLocationAnalysis(
{'fraction_non_alphanumeric': 0.07158351409978309, 'fraction_numerical': 0.015618221258134491, 'mean_word_length': 8.114624505928854, 'pattern_counts': {'":': 0, '<': 11, '<?xml version=': 0, '>': 11, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4438274', 'n_tokens_mistral': 658, 'n_tokens_neox': 612, 'n_words': 129}