<commit_before># BioHacks

<NAME>

A collection of Python scripts I use for random bioinformatics-related
tasks.<commit_msg>added descriptions<commit_after># BioHacks

<NAME>

A collection of Python scripts I use for random bioinformatics-related
tasks.

'''
bin
├── eval-fasta - evaluate arbitrary Python code on records in a fasta file
├── fasta-to-phylip - convert FASTA alignment to Phylip format
├── fastq-to-fasta - convert FASTQ file to FASTA file
├── filter-fasta - filter FASTA file based on arbitrary Python lambda
├── qseq-to-fastq - convert QSEQ file to FASTQ file
└── sequence-statistics - calculate various stats on sequence lengths (mean, median, n50)
'''
{'fraction_non_alphanumeric': 0.0880597014925373, 'fraction_numerical': 0.0029850746268656717, 'mean_word_length': 4.686440677966102, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5639652', 'n_tokens_mistral': 206, 'n_tokens_neox': 201, 'n_words': 86}