<commit_before>{% set version = "3.0.2" %}

package:
  name: hicexplorer
  version: '{{ version }}'

source:
  url: https://github.com/deeptools/HiCExplorer/archive/{{ version }}.tar.gz
  sha256: 84072844e81017a73a7341dd949dbcc11bf0516dcfb0a7a59e5908a1de89e268

build:
  number: 0
  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
  noarch: python

requirements:
  host:
    - python >=3.5
    - pip
  run:
    - python  >=3.5
    - numpy >=1.15
    - scipy
    - matplotlib ==3.0.*
    - pysam
    - intervaltree
    - biopython
    - pytables
    - pybigwig
    - pandas
    - jinja2
    - configparser  # [not py>34]
    - cooler >=0.8.3
    - six
    - future
    - unidecode
    - hicmatrix ==9
    - pygenometracks >=2.1
    - hic2cool >=0.5
    - fit_nbinom >=1.1
    - krbalancing ==0.0.4

test:
  imports:
    - hicexplorer
  commands:
    - findRestSite --version
    - hicAggregateContacts --version
    - hicBuildMatrix --version
    - hicCorrectMatrix --version<commit_msg>HiCExplorer update to 3.1 (#16262)<commit_after>{% set version = "3.1" %}

package:
  name: hicexplorer
  version: '{{ version }}'

source:
  url: https://github.com/deeptools/HiCExplorer/archive/{{ version }}.tar.gz
  sha256: 1919748e87f0a4466c2d48b40af9265f0329cc168d5424453c3fb7505d50efb7

build:
  number: 0
  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
  noarch: python

requirements:
  host:
    - python >=3.5
    - pip
  run:
    - python  >=3.5
    - numpy >=1.16
    - scipy >=1.2
    - matplotlib ==3.0.*
    - pysam
    - intervaltree
    - biopython
    - pytables
    - pybigwig
    - pandas
    - jinja2
    - configparser  # [not py>34]
    - cooler >=0.8.5
    - six
    - future
    - unidecode
    - hicmatrix >=10
    - pygenometracks >=3.0
    - hic2cool >=0.7
    - fit_nbinom >=1.1
    - krbalancing >=0.0.5

test:
  imports:
    - hicexplorer
  commands:
    - findRestSite --version
    - hicAggregateContacts --version
    - hicBuildMatrix --version
    - hicCorrectMatrix --version
{'fraction_non_alphanumeric': 0.13532338308457711, 'fraction_numerical': 0.08059701492537313, 'mean_word_length': 2.117829457364341, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 22, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7531736', 'n_tokens_mistral': 897, 'n_tokens_neox': 821, 'n_words': 160}