<commit_before><?xml version="1.0"?>
<items>
    <item id="0" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="FlyMine"/>
        <attribute name="description"
            value="The FlyMine Drosophila and Anopheles data warehouse"/>
        <attribute name="url" value="http://www.flymine.org"/>
    </item>

    <item id="10" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="UniProt"/>
        <attribute name="description" value="UniProt Universal Protein Resource"/>
        <attribute name="url" value="http://www.uniprot.org"/>
    </item>
    <item id="11" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="Swiss-Prot data set"/>
        <attribute name="description" value="The Swiss-Prot protein knowledge base"/>
        <attribute name="url" value="http://ca.expasy.org/sprot"/>
        <reference name="dataSource" ref_id="10"/>
    </item>
    <item id="12" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="TrEMBL data set"/>
        <attribute name="description" value="Translated CDSs from the EMBL database"/>
        <attribute name="url" value="http://www.ebi.ac.uk/trembl/"/>
        <reference name="dataSource" ref_id="10"/>
    </item>
    <item id="13" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="UniProt data set"/>
        <attribute name="description" value="UniProt Knowledgebase"/>
        <attribute name="url" value="http://www.ebi.uniprot.org/uniprot-srv/uniProtSearch.do"/>
        <reference name="dataSource" ref_id="10"/>
    </item>

    <item id="20" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="FlyBase"/>
        <attribute name="description" value="A database of genetic and molecular data for Drosophila"/>
        <attribute name="url" value="http://www.flybase.org"/>
    </item>
    <item id="21" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="FlyBase Drosophila melanogaster data set"/>
        <attribute name="description" value="The FlyBase Drosophila melanogaster genome data set"/>
        <attribute name="version" value="5.1"/>
        <attribute name="url" value="http://www.flybase.org"/>
        <reference name="dataSource" ref_id="20"/>
    </item>
    <item id="22" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="FlyBase Drosophila pseudoobscura pseudoobscura data set"/>
        <attribute name="description" value="The FlyBase Drosophila pseudoobscura pseudoobscura genome data set"/>
        <attribute name="version" value="2.0"/>
        <attribute name="url" value="http://www.flybase.org"/>
        <reference name="dataSource" ref_id="20"/>
    </item>

    <item id="30" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="SBC"/>
        <attribute name="description" value="Stockholm Bioinformatics Center"/>
        <attribute name="url" value="http://inparanoid.sbc.su.se"/>
    </item>

    <item id="31" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="InParanoid data set"/>
        <attribute name="description" value="InParanoid eukaryotic orthologue groups"/>
        <attribute name="url" value="http://inparanoid.sbc.su.se/download/current/sqltables"/>
        <reference name="dataSource" ref_id="30"/>
    </item>

    <item id="40" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="WormBase"/>
        <attribute name="description" value="The database of the genetics, genomics and biology of Caenorhabditis elegans"/>
        <attribute name="url" value="http://www.wormbase.org"/>
    </item>
    <item id="50" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="MGI"/>
        <attribute name="description" value="Mouse Genome Database Project"/>
        <attribute name="url" value="http://www.informatics.jax.org"/>
    </item>

    <item id="60" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="SGD"/>
        <attribute name="description" value="Saccharomyces cerevisiae genome database"/>
        <attribute name="url" value="http://www.yeastgenome.org"/>
    </item>

    <item id="70" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="Pfam"/>
        <attribute name="description"
            value="Database of multiple alignments of protein domains and conserved protein regions"/>
        <attribute name="url" value="http://www.sanger.ac.uk/Software/Pfam"/>
    </item>

    <item id="80" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="IntAct"/>
        <attribute name="description" value="Protein interaction database"/>
        <attribute name="url" value="http://www.ebi.ac.uk/intact"/>
    </item>
    <item id="81" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="IntAct data set"/>
        <attribute name="url" value="http://www.ebi.ac.uk/intact"/>
        <reference name="dataSource" ref_id="80"/>
    </item>


    <item id="100" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="INDAC"/>
        <attribute name="description" value="International Drosophila Array Consortium"/>
        <attribute name="url" value="http://www.indac.net/"/>
    </item>
    <item id="101" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="INDAC long oligo data set"/>
        <attribute name="description"
            value="International Drosophila Array Consortium long oligo data set"/>
        <attribute name="version" value="1.0"/>
        <attribute name="url" value="http://www.indac.net/"/>
        <reference name="dataSource" ref_id="100"/>
    </item>
<commit_msg>changed Pfam static datasource name so object merges with !InterPro<commit_after><?xml version="1.0"?>
<items>
    <item id="0" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="FlyMine"/>
        <attribute name="description"
            value="The FlyMine Drosophila and Anopheles data warehouse"/>
        <attribute name="url" value="http://www.flymine.org"/>
    </item>

    <item id="10" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="UniProt"/>
        <attribute name="description" value="UniProt Universal Protein Resource"/>
        <attribute name="url" value="http://www.uniprot.org"/>
    </item>
    <item id="11" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="Swiss-Prot data set"/>
        <attribute name="description" value="The Swiss-Prot protein knowledge base"/>
        <attribute name="url" value="http://ca.expasy.org/sprot"/>
        <reference name="dataSource" ref_id="10"/>
    </item>
    <item id="12" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="TrEMBL data set"/>
        <attribute name="description" value="Translated CDSs from the EMBL database"/>
        <attribute name="url" value="http://www.ebi.ac.uk/trembl/"/>
        <reference name="dataSource" ref_id="10"/>
    </item>
    <item id="13" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="UniProt data set"/>
        <attribute name="description" value="UniProt Knowledgebase"/>
        <attribute name="url" value="http://www.ebi.uniprot.org/uniprot-srv/uniProtSearch.do"/>
        <reference name="dataSource" ref_id="10"/>
    </item>

    <item id="20" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="FlyBase"/>
        <attribute name="description" value="A database of genetic and molecular data for Drosophila"/>
        <attribute name="url" value="http://www.flybase.org"/>
    </item>
    <item id="21" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="FlyBase Drosophila melanogaster data set"/>
        <attribute name="description" value="The FlyBase Drosophila melanogaster genome data set"/>
        <attribute name="version" value="5.1"/>
        <attribute name="url" value="http://www.flybase.org"/>
        <reference name="dataSource" ref_id="20"/>
    </item>
    <item id="22" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="FlyBase Drosophila pseudoobscura pseudoobscura data set"/>
        <attribute name="description" value="The FlyBase Drosophila pseudoobscura pseudoobscura genome data set"/>
        <attribute name="version" value="2.0"/>
        <attribute name="url" value="http://www.flybase.org"/>
        <reference name="dataSource" ref_id="20"/>
    </item>

    <item id="30" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="SBC"/>
        <attribute name="description" value="Stockholm Bioinformatics Center"/>
        <attribute name="url" value="http://inparanoid.sbc.su.se"/>
    </item>

    <item id="31" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="InParanoid data set"/>
        <attribute name="description" value="InParanoid eukaryotic orthologue groups"/>
        <attribute name="url" value="http://inparanoid.sbc.su.se/download/current/sqltables"/>
        <reference name="dataSource" ref_id="30"/>
    </item>

    <item id="40" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="WormBase"/>
        <attribute name="description" value="The database of the genetics, genomics and biology of Caenorhabditis elegans"/>
        <attribute name="url" value="http://www.wormbase.org"/>
    </item>
    <item id="50" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="MGI"/>
        <attribute name="description" value="Mouse Genome Database Project"/>
        <attribute name="url" value="http://www.informatics.jax.org"/>
    </item>

    <item id="60" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="SGD"/>
        <attribute name="description" value="Saccharomyces cerevisiae genome database"/>
        <attribute name="url" value="http://www.yeastgenome.org"/>
    </item>

    <item id="70" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="PFAM"/>
        <attribute name="description" value="Database of multiple alignments of protein domains and conserved protein regions"/>
        <attribute name="url" value="http://www.sanger.ac.uk/Software/Pfam"/>
    </item>

    <item id="80" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="IntAct"/>
        <attribute name="description" value="Protein interaction database"/>
        <attribute name="url" value="http://www.ebi.ac.uk/intact"/>
    </item>
    <item id="81" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="IntAct data set"/>
        <attribute name="url" value="http://www.ebi.ac.uk/intact"/>
        <reference name="dataSource" ref_id="80"/>
    </item>


    <item id="100" class="" implements="http://www.flymine.org/model/genomic#DataSource">
        <attribute name="name" value="INDAC"/>
        <attribute name="description" value="International Drosophila Array Consortium"/>
        <attribute name="url" value="http://www.indac.net/"/>
    </item>
    <item id="101" class="" implements="http://www.flymine.org/model/genomic#DataSet">
        <attribute name="title" value="INDAC long oligo data set"/>
        <attribute name="description"
            value="International Drosophila Array Consortium long oligo data set"/>
        <attribute name="version" value="1.0"/>
        <attribute name="url" value="http://www.indac.net/"/>
        <reference name="dataSource" ref_id="100"/>
    </item>

{'fraction_non_alphanumeric': 0.17398489140698772, 'fraction_numerical': 0.009757632987094743, 'mean_word_length': 3.5914017341040463, 'pattern_counts': {'":': 0, '<': 207, '<?xml version=': 2, '>': 207, 'https://': 0, 'lorem ipsum': 0, 'www.': 66, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '901879', 'n_tokens_mistral': 3839, 'n_tokens_neox': 3634, 'n_words': 791}