<commit_before><?xml version="1.0" encoding="UTF-8"?>
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <parent>
    <artifactId>biojava</artifactId>
    <groupId>org.biojava</groupId>
    <version>3.0-SNAPSHOT</version>
  </parent>
  <modelVersion>4.0.0</modelVersion>
  <groupId>org.biojava</groupId>
  <artifactId>biojava3-phylo</artifactId>
  <name>biojava3-phylo</name>
  <distributionManagement>
		<downloadUrl>http://www.biojava.org/download/maven/</downloadUrl>
		<repository>
			<uniqueVersion>false</uniqueVersion>
			<id>biojava-maven-repo</id>
			<name>BioJava Maven Repository</name>
			<url>scp://portal.open-bio.org/home/websites/biojava.org/html/static/download/maven/</url>
			<layout>default</layout>
		</repository>
	</distributionManagement>
  <version>3.0-SNAPSHOT</version>
  <url>http://maven.apache.org</url>
  <build>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-compiler-plugin</artifactId>
        <version>2.0.2</version>
        <configuration>
          <source>1.6</source>
          <target>1.6</target>
        </configuration>
      </plugin>
    </plugins>
  </build>
  <dependencies>
    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>4.7</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.biojava</groupId>
      <artifactId>biojava3-core</artifactId>
      <version>3.0-SNAPSHOT</version>
      <scope>compile</scope>
    </dependency>
  </dependencies>
</project><commit_msg>adding external forester.jar as dependency<commit_after><?xml version="1.0" encoding="UTF-8"?>
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns="http://maven.apache.org/POM/4.0.0"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <parent>
    <artifactId>biojava</artifactId>
    <groupId>org.biojava</groupId>
    <version>3.0-SNAPSHOT</version>
  </parent>
  <modelVersion>4.0.0</modelVersion>
  <groupId>org.biojava</groupId>
  <artifactId>biojava3-phylo</artifactId>
  <name>biojava3-phylo</name>
  <repositories>
		<repository>
			<id>biojava-maven-repo</id>
			<name>BioJava repository</name>
			<url>http://www.biojava.org/download/maven/</url>
			<snapshots>
				<enabled>true</enabled>
				<updatePolicy>always</updatePolicy>
			</snapshots>
			<releases>
				<enabled>true</enabled>
				<updatePolicy>always</updatePolicy>
			</releases>
		</repository>
	</repositories>
  <distributionManagement>
		<downloadUrl>http://www.biojava.org/download/maven/</downloadUrl>
		<repository>
			<uniqueVersion>false</uniqueVersion>
			<id>biojava-maven-repo</id>
			<name>BioJava Maven Repository</name>
			<url>scp://portal.open-bio.org/home/websites/biojava.org/html/static/download/maven/</url>
			<layout>default</layout>
		</repository>
	</distributionManagement>
  <version>3.0-SNAPSHOT</version>
  <url>http://maven.apache.org</url>
  <build>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-compiler-plugin</artifactId>
        <version>2.0.2</version>
        <configuration>
          <source>1.6</source>
          <target>1.6</target>
        </configuration>
      </plugin>
    </plugins>
  </build>
  <dependencies>
    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>4.7</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.biojava</groupId>
      <artifactId>biojava3-core</artifactId>
      <version>3.0-SNAPSHOT</version>
      <scope>compile</scope>
    </dependency>
    <dependency>
    	<groupId>org</groupId>
    	<artifactId>forester</artifactId>
    	<version>0.955</version>
    	<type>jar</type>
    	<scope>compile</scope>
    </dependency>
  </dependencies>
</project>
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{'dir': 'git-commits-cleaned', 'id': '2934365', 'n_tokens_mistral': 1583, 'n_tokens_neox': 1405, 'n_words': 144}