<commit_before>###############################################################################
#   
#   Name:           Taeniopygia_Guttata.ini
#   
#   Description:    Configuration file for Taeniopygia_Guttata ensembl
#
###############################################################################

#################
# GENERAL CONFIG
#################
[general]

# Database info: only specify values if different from those in DEFAULTS

# Assembly info
ENSEMBL_CHROMOSOMES  = [1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 1A 1B 4A LG2 LG5 LGE22 Un Z ]

SPECIES_RELEASE_VERSION = 1a


# Search config
ENSEMBL_SEARCH_IDXS     = [ Domain Family Gene GenomicAlignment Marker Sequence ]


##################
# DATABASE CONFIG
# Change the values to the local names of these databases
##################

[databases]
DATABASE_CORE            = %_core_%
DATABASE_USERDATA  = taeniopygia_guttata_userdata
DATABASE_OTHERFEATURES   = %_otherfeatures_%

# You can overide the default settings (in DEFAULTS.ini) for specific
# databases. To do this, create an ini-file for this species e.g.
# public-plugins/mirror/conf/ini-file/Canis_familiaris.ini with
# the section you wish to overwrite (see the example INI file:
# public-plugins/mirror/conf/ini-files/Genus_species.ini

####################
# Help Database Config
####################

[DATABASE_USERDATA]

[DATABASE_WEBSITE] 
# Accept defaults


####################
# Species-specific colours
####################

[ENSEMBL_STYLE]

[ENSEMBL_COLOURS] 
# Accept defaults

[TAXON_LABEL]
# Accept defaults

####################
# External Database ad Indexer Config
####################

[ENSEMBL_EXTERNAL_DATABASES]
# Accept defaults

[ENSEMBL_EXTERNAL_INDEXERS]
# Accept defaults


#############
# DAS CONFIG
#############

[ENSEMBL_TRACK_DAS_SOURCES]

[ENSEMBL_INTERNAL_DAS_SOURCES]

####################
# Configure External Genome Browsers
####################

[EXTERNAL_GENOME_BROWSERS] 
# None

####################
# Configure External URLs
# These are mainly for (1) External Genome Browse  {EGB_ }
#                      (2) DAS tracks              {DAS_ }
####################

[ENSEMBL_EXTERNAL_URLS]

[ENSEMBL_DICTIONARY]


[SAMPLE_DATA]
LOCATION_PARAM    = 1A:38707363-38830227
LOCATION_TEXT     = 1A:38707363-38830227

GENE_PARAM        = ENSTGUG00000007572
GENE_TEXT         = Synaptotagmin I

TRANSCRIPT_PARAM  = ENSTGUT00000007900
TRANSCRIPT_TEXT   = NP_001041725.1

SEARCH_TEXT       = calcium channel


<commit_msg>added in variation database config<commit_after>###############################################################################
#   
#   Name:           Taeniopygia_Guttata.ini
#   
#   Description:    Configuration file for Taeniopygia_Guttata ensembl
#
###############################################################################

#################
# GENERAL CONFIG
#################
[general]

# Database info: only specify values if different from those in DEFAULTS

# Assembly info
ENSEMBL_CHROMOSOMES  = [1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 1A 1B 4A LG2 LG5 LGE22 Un Z ]

SPECIES_RELEASE_VERSION = 1a


# Search config
ENSEMBL_SEARCH_IDXS     = [ Domain Family Gene GenomicAlignment Marker Sequence ]


##################
# DATABASE CONFIG
# Change the values to the local names of these databases
##################

[databases]
DATABASE_CORE            = %_core_%
DATABASE_USERDATA  = taeniopygia_guttata_userdata
DATABASE_OTHERFEATURES   = %_otherfeatures_%
DATABASE_VARIATION     = %_variation_%

# You can overide the default settings (in DEFAULTS.ini) for specific
# databases. To do this, create an ini-file for this species e.g.
# public-plugins/mirror/conf/ini-file/Canis_familiaris.ini with
# the section you wish to overwrite (see the example INI file:
# public-plugins/mirror/conf/ini-files/Genus_species.ini

####################
# Help Database Config
####################

[DATABASE_USERDATA]

[DATABASE_WEBSITE] 
# Accept defaults


####################
# Species-specific colours
####################

[ENSEMBL_STYLE]

[ENSEMBL_COLOURS] 
# Accept defaults

[TAXON_LABEL]
# Accept defaults

####################
# External Database ad Indexer Config
####################

[ENSEMBL_EXTERNAL_DATABASES]
# Accept defaults

[ENSEMBL_EXTERNAL_INDEXERS]
# Accept defaults


#############
# DAS CONFIG
#############

[ENSEMBL_TRACK_DAS_SOURCES]

[ENSEMBL_INTERNAL_DAS_SOURCES]

####################
# Configure External Genome Browsers
####################

[EXTERNAL_GENOME_BROWSERS] 
# None

####################
# Configure External URLs
# These are mainly for (1) External Genome Browse  {EGB_ }
#                      (2) DAS tracks              {DAS_ }
####################

[ENSEMBL_EXTERNAL_URLS]

[ENSEMBL_DICTIONARY]


[SAMPLE_DATA]
LOCATION_PARAM    = 1A:38707363-38830227
LOCATION_TEXT     = 1A:38707363-38830227

GENE_PARAM        = ENSTGUG00000007572
GENE_TEXT         = Synaptotagmin I

TRANSCRIPT_PARAM  = ENSTGUT00000007900
TRANSCRIPT_TEXT   = NP_001041725.1

SEARCH_TEXT       = calcium channel



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