<commit_before>#define SEQAN_PROFILE		// enable time measuring
#define FIONA_ALLOWINDELS	// allow for indels (chooses a less compact FragmentStore)
//#define FIONA_MEMOPT		// small suffix array values (<16mio reads of length <256)
#if defined(_OPENMP)        // Only enable parallelism in fiona if OpenMP is enabled.
#define FIONA_PARALLEL		// divide suffix tree into subtrees for each possible 3-gram
							// and use process subtrees in parallel
#endif  // defined(_OPENMP)

// debugging
//#define SEQAN_DEBUG_INDEX
//#define SEQAN_DEBUG
//#define SEQAN_VERBOSE
//#define SEQAN_VVERBOSE

#if defined(_OPENMP)
#include <omp.h>
#define SEQAN_PARALLEL
#if !defined(PLATFORM_WINDOWS_MINGW)
// The parallel STL generates warnings in MinGW: "...parallel/compatibility.h:167:42: note: #pragma message: slow __fetch_and_add_64".
// Thus, we do not enable it in this case.
#define _GLIBCXX_PARALLEL
#endif  // #if !defined(PLATFORM_WINDOWS_MINGW)<commit_msg>Not enabling parallel STL on 32 bit windows with MinGW.<commit_after>#define SEQAN_PROFILE		// enable time measuring
#define FIONA_ALLOWINDELS	// allow for indels (chooses a less compact FragmentStore)
//#define FIONA_MEMOPT		// small suffix array values (<16mio reads of length <256)
#if defined(_OPENMP)        // Only enable parallelism in fiona if OpenMP is enabled.
#define FIONA_PARALLEL		// divide suffix tree into subtrees for each possible 3-gram
							// and use process subtrees in parallel
#endif  // defined(_OPENMP)

// debugging
//#define SEQAN_DEBUG_INDEX
//#define SEQAN_DEBUG
//#define SEQAN_VERBOSE
//#define SEQAN_VVERBOSE

#if defined(_OPENMP)
#include <omp.h>
#define SEQAN_PARALLEL
#if !defined(__MINGW32__) || defined(__amd64__) || defined(__x86_64__) || defined(__ia64__)
// The parallel STL generates warnings in MinGW: "...parallel/compatibility.h:167:42: note: #pragma message: slow __fetch_and_add_64".
// Thus, we do not enable it in this case.
#define _GLIBCXX_PARALLEL
#endif  // #if !defined(__MINGW32__) || defined(__amd64__) || defined(__x86_64__) || defined(__ia64__)
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