<commit_before>"""
Annotate a tree with actual and inferred titer measurements.
"""

import json, os, sys
import numpy as np
from collections import defaultdict
from Bio import Phylo

from .reconstruct_sequences import load_alignments
from .titer_model import InsufficientDataException
from .utils import read_metadata, read_node_data, write_json
<commit_msg>titers: remove unused import of utils.read_metadata<commit_after>"""
Annotate a tree with actual and inferred titer measurements.
"""

import json, os, sys
import numpy as np
from collections import defaultdict
from Bio import Phylo

from .reconstruct_sequences import load_alignments
from .titer_model import InsufficientDataException
from .utils import read_node_data, write_json

{'fraction_non_alphanumeric': 0.04723346828609987, 'fraction_numerical': 0.0, 'mean_word_length': 6.42, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7080538', 'n_tokens_mistral': 202, 'n_tokens_neox': 198, 'n_words': 84}