<commit_before>import ez_setup
ez_setup.use_setuptools()

import glob
import os
import sys
from setuptools import setup
from distutils.extension import Extension

if 'setuptools.extension' in sys.modules:
    m = sys.modules['setuptools.extension']
    m.Extension.__dict__ = m._Extension.__dict__

version_py = os.path.join(os.path.dirname(__file__), 'gemini', 'version.py')
version = open(version_py).read().strip().split('=')[-1].replace('"','')
long_description = """
``gemini`` is a database framework for exploring genetic variation'
"""

setup(
        name="gemini",
        version=version,
        install_requires=['numpy>=1.6.0', 
                          'pyparsing>=1.5.6', 
                          'pysam>=0.6',
                          'cyvcf>=0.1.5', 
                          'PyYAML >= 3.10', 
                          'pybedtools>=0.6.1',
                          'python-graph-core >= 1.8.2',
                          'python-graph-dot >= 1.8.2',<commit_msg>Restrict pyparsing version dependency to Python 2.x compatible versions<commit_after>import ez_setup
ez_setup.use_setuptools()

import glob
import os
import sys
from setuptools import setup
from distutils.extension import Extension

if 'setuptools.extension' in sys.modules:
    m = sys.modules['setuptools.extension']
    m.Extension.__dict__ = m._Extension.__dict__

version_py = os.path.join(os.path.dirname(__file__), 'gemini', 'version.py')
version = open(version_py).read().strip().split('=')[-1].replace('"','')
long_description = """
``gemini`` is a database framework for exploring genetic variation'
"""

setup(
        name="gemini",
        version=version,
        install_requires=['numpy>=1.6.0', 
                          'pyparsing>=1.5.6,<=1.5.7', 
                          'pysam>=0.6',
                          'cyvcf>=0.1.5', 
                          'PyYAML >= 3.10', 
                          'pybedtools>=0.6.1',
                          'python-graph-core >= 1.8.2',
                          'python-graph-dot >= 1.8.2',
{'fraction_non_alphanumeric': 0.14607843137254903, 'fraction_numerical': 0.025490196078431372, 'mean_word_length': 2.0924242424242423, 'pattern_counts': {'":': 0, '<': 4, '<?xml version=': 0, '>': 19, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1704450', 'n_tokens_mistral': 647, 'n_tokens_neox': 625, 'n_words': 117}