<commit_before>
FROM oesteban/crn_nipype

WORKDIR /root/src
ADD . mriqc/
# Install nipype & mriqc
RUN source activate crnenv && \
    pip install --upgrade numpy && \
    cd mriqc && \
    pip install -e . && \
    python -c "from matplotlib import font_manager" && \
    python -c "from mriqc.data import get_brainweb_1mm_normal; get_brainweb_1mm_normal()"

WORKDIR /root/
ADD build/files/run_* /usr/bin/
RUN chmod +x /usr/bin/run_*

ENTRYPOINT ["/usr/bin/run_mriqc"]
CMD ["--help"]
<commit_msg>Update Dockerfile to add python coverage<commit_after>
FROM oesteban/crn_nipype

WORKDIR /root/src
ADD . mriqc/
# Install nipype & mriqc
RUN source activate crnenv && \
    pip install --upgrade numpy && \
    pip install coverage && \
    cd mriqc && \
    pip install -e . && \
    python -c "from matplotlib import font_manager" && \
    python -c "from mriqc.data import get_brainweb_1mm_normal; get_brainweb_1mm_normal()"

WORKDIR /root/
ADD build/files/run_* /usr/bin/
RUN chmod +x /usr/bin/run_*

ENTRYPOINT ["/usr/bin/run_mriqc"]
CMD ["--help"]

{'fraction_non_alphanumeric': 0.12678741658722592, 'fraction_numerical': 0.0038131553860819827, 'mean_word_length': 3.1666666666666665, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6285375', 'n_tokens_mistral': 407, 'n_tokens_neox': 385, 'n_words': 106}