<commit_before>/*jslint node: true */
/*jshint laxbreak: true */
"use strict";

var d3 = require("d3");
var _ = require("underscore");
var ViewerFactory = require("./ViewerFactory");
var LegendFactory = require("./LegendFactory");
var VariantFilterDialog = require("./VariantFilterDialog");

var aaList = ['H', 'R', 'K', 'E', 'D', 'Q', 'N', 'Y', 'C', 'T', 'S', 'G', 'M', 'W', 'F', 'P', 'I', 'L', 'V', 'A', '*'];

var drawMainSequence = function(variantViewer, bars) {
    var circle = bars.selectAll('circle')
        .data(function(d) {
            return [d];
        });<commit_msg>Organize aa according to chemical properties.<commit_after>/*jslint node: true */
/*jshint laxbreak: true */
"use strict";

var d3 = require("d3");
var _ = require("underscore");
var ViewerFactory = require("./ViewerFactory");
var LegendFactory = require("./LegendFactory");
var VariantFilterDialog = require("./VariantFilterDialog");

var aaList = ['G', 'A', 'V', 'L', 'I' //aliphatic
    , 'S', 'T' //hydroxyl
    , 'C', 'M' //sulfur-containing
    , 'D', 'N', 'E', 'Q' //acidic
    , 'R', 'K', 'H' //basic
    , 'F', 'Y', 'W' //aromatic
    , 'P' //imino
    , '*']; //stop gained or lost

var drawMainSequence = function(variantViewer, bars) {
    var circle = bars.selectAll('circle')
        .data(function(d) {
            return [d];
        });
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{'dir': 'git-commits-cleaned', 'id': '6396781', 'n_tokens_mistral': 481, 'n_tokens_neox': 464, 'n_words': 124}