<commit_before>import glob
import os

from flask import Blueprint, jsonify

from .security import validate_request_authentication
from qiime.sdk import PluginManager, Artifact

PLUGIN_MANAGER = PluginManager()
v1 = Blueprint('v1', __name__)
v1.before_request(validate_request_authentication)


@v1.route('/', methods=['GET', 'POST'])
def root():
    return jsonify(content="!")


@v1.route('/plugins', methods=['GET'])
def api_plugins():
    plugins_dict = {}
    plugins_dict = [
        {'name': name, 'workflow_uri': '%s/workflows' % name}
        for name in PLUGIN_MANAGER.plugins
    ]

    return jsonify({"plugins": plugins_dict})


@v1.route('/<plugin_name>/workflows', methods=['GET'])
def api_workflows(plugin_name):
    plugin = PLUGIN_MANAGER.plugins[plugin_name]
    workflows_dict = {}
    for key, value in plugin.workflows.items():
        workflows_dict[key] = {}
        workflows_dict[key]['name'] = key
        workflows_dict[key]['info'] = "Produces: {}".format(
            ", ".join([
                repr(type)
                for type in value.signature.output_artifacts.values()
            ])
        )
        workflows_dict[key]['description'] = value.signature.name
        workflows_dict[key]['input_artifacts'] = [
            {'name': name, 'type': repr(type)}
            for name, type in value.signature.input_artifacts.items()
        ]
        workflows_dict[key]['input_parameters'] = [
            {'name': name, 'type': repr(type)}
            for name, type in value.signature.input_parameters.items()
        ]
        workflows_dict[key]['output_artifacts'] = [
            {'name': name, 'type': repr(type)}
            for name, type in value.signature.output_artifacts.items()
        ]
        workflows_dict[key]['input_artifacts_uri'] = '%s/%s/inputartifacts' % (plugin_name, key)
    return jsonify({"workflows": workflows_dict})


@v1.route('/artifacts', methods=['GET'])
def api_artifacts():
    artifact_paths = glob.glob(os.path.join(os.getcwd(), '*.qtf'))
    artifacts = [{
        'name' : os.path.splitext(os.path.split(path)[1])[0],
        'uuid' : str(Artifact(path).uuid),
        'type' : str(Artifact(path).type) }
        for path in artifact_paths
    ]
    return jsonify({"artifacts": artifacts})

@v1.route('/<plugin_name>/<workflow_name>/inputartifacts', methods=['GET'])
def api_input_artifacts(plugin_name, workflow_name):
    pass<commit_msg>Python code tweaks to pass flake8<commit_after>import glob
import os

from flask import Blueprint, jsonify

from .security import validate_request_authentication
from qiime.sdk import PluginManager, Artifact

PLUGIN_MANAGER = PluginManager()
v1 = Blueprint('v1', __name__)
v1.before_request(validate_request_authentication)


@v1.route('/', methods=['GET', 'POST'])
def root():
    return jsonify(content="!")


@v1.route('/plugins', methods=['GET'])
def api_plugins():
    plugins_dict = {}
    plugins_dict = [
        {'name': name, 'workflow_uri': '%s/workflows' % name}
        for name in PLUGIN_MANAGER.plugins
    ]

    return jsonify({"plugins": plugins_dict})


@v1.route('/<plugin_name>/workflows', methods=['GET'])
def api_workflows(plugin_name):
    plugin = PLUGIN_MANAGER.plugins[plugin_name]
    workflows_dict = {}
    for key, value in plugin.workflows.items():
        workflows_dict[key] = {}
        workflows_dict[key]['name'] = key
        workflows_dict[key]['info'] = "Produces: {}".format(
            ", ".join([
                repr(type)
                for type in value.signature.output_artifacts.values()
            ])
        )
        workflows_dict[key]['description'] = value.signature.name
        workflows_dict[key]['input_artifacts'] = [
            {'name': name, 'type': repr(type)}
            for name, type in value.signature.input_artifacts.items()
        ]
        workflows_dict[key]['input_parameters'] = [
            {'name': name, 'type': repr(type)}
            for name, type in value.signature.input_parameters.items()
        ]
        workflows_dict[key]['output_artifacts'] = [
            {'name': name, 'type': repr(type)}
            for name, type in value.signature.output_artifacts.items()
        ]
        workflows_dict[key]['input_artifacts_uri'] = \
            '%s/%s/inputartifacts' % (plugin_name, key)
    return jsonify({"workflows": workflows_dict})


@v1.route('/artifacts', methods=['GET'])
def api_artifacts():
    artifact_paths = glob.glob(os.path.join(os.getcwd(), '*.qtf'))
    artifacts = [
        {
            'name': os.path.splitext(os.path.split(path)[1])[0],
            'uuid': str(Artifact(path).uuid),
            'type': str(Artifact(path).type)
        }
        for path in artifact_paths
    ]
    return jsonify({"artifacts": artifacts})


@v1.route('/<plugin_name>/<workflow_name>/inputartifacts', methods=['GET'])
def api_input_artifacts(plugin_name, workflow_name):
    pass
{'fraction_non_alphanumeric': 0.1526046986721144, 'fraction_numerical': 0.004290091930541369, 'mean_word_length': 3.1456392887383573, 'pattern_counts': {'":': 6, '<': 9, '<?xml version=': 0, '>': 9, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5683506', 'n_tokens_mistral': 1600, 'n_tokens_neox': 1564, 'n_words': 282}