<commit_before>---
title: "Testing Gist and embedding scripts"
permalink: /resources/abel/testing/
excerpt: "How to use a Gist to embed code"
tags:
  - unix
  - mapping
categories:
  - abel
---

<script src="https://gist.github.com/jonbra/e5b116e51ff565a65b839357eeca0ca0.js"></script><commit_msg>added rss support<commit_after>---
title: "Testing Gist and embedding scripts"
permalink: /resources/abel/testing/
excerpt: "How to use a Gist to embed code"
tags:
  - unix
  - mapping
categories:
  - abel
---

<script src="https://gist.github.com/jonbra/e5b116e51ff565a65b839357eeca0ca0.js"></script>

<p>
  <script src="https://gist.github.com/<gist_id>.js"> </script>
  <noscript>
    <pre>
       #!/bin/sh
	   #SBATCH --job-name=fastqc
	   #SBATCH --account=uio
	   #SBATCH --time=5:00:00
	   #SBATCH --mem-per-cpu=8G
	   #SBATCH --output=slurm-%j.base

	   ## Set up job environment:
	   source /cluster/bin/jobsetup
	   module purge   # clear any inherited modules
	   set -o errexit

	   module load fastqc

	   for i in ../SequenceData/RawSeqs/*.fq.gz
	   do
	           fastqc -o ../Analyses/FastQC/ $i
	   done
    </pre>
  </noscript>
</p>
{'fraction_non_alphanumeric': 0.14721254355400698, 'fraction_numerical': 0.03832752613240418, 'mean_word_length': 2.83, 'pattern_counts': {'":': 0, '<': 16, '<?xml version=': 0, '>': 16, 'https://': 3, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3950551', 'n_tokens_mistral': 478, 'n_tokens_neox': 433, 'n_words': 99}