<commit_before><project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
	<properties>
		<cytoscape.api.version>3.8.0</cytoscape.api.version>

		<maven-compiler-plugin.version>3.8.0</maven-compiler-plugin.version>
		<maven-bundle-plugin.version>4.1.0</maven-bundle-plugin.version>

		<osgi.api.version>6.0.0</osgi.api.version>

		<bundle.symbolicName>org.cytoscape.keggscape</bundle.symbolicName>
		<bundle.namespaece>org.cytoscape.keggscape</bundle.namespaece>
		<bundle.name>KEGGscape</bundle.name>
	</properties>

	<modelVersion>4.0.0</modelVersion>
	<groupId>org.cytoscape</groupId>
	<artifactId>keggscape</artifactId>
	<version>0.9.0</version>
	<name>KEGGScape</name>

	<packaging>bundle</packaging>

	<build>
		<finalName>KEGGscape</finalName>
		<plugins>
			<plugin>
				<groupId>org.jvnet.jaxb2.maven2</groupId>
				<artifactId>maven-jaxb2-plugin</artifactId>
				<version>0.14.0</version>
				<executions>
					<execution>
						<goals>
							<goal>generate</goal>
						</goals>
						<configuration>
							<extension>true</extension>
							<schemaLanguage>DTD</schemaLanguage>
							<schemaIncludes>
								<schemaInclude>*.dtd</schemaInclude>
							</schemaIncludes>
							<bindingIncldes>
								<bindingInclde>*.jaxb</bindingInclde>
							</bindingIncldes>
							<generateDirectory>${basedir}/src/main/java</generateDirectory>
							<generatePackage>org.cytoscape.keggscape.internal.generated</generatePackage>
						</configuration>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>${maven-compiler-plugin.version}</version>
				<configuration>
					<!-- These options indicate the source code is Java 1.8-compliant and
						the resulting class files should be Java 1.8-compatible. -->
					<source>1.8</source>
					<target>1.8</target>
				</configuration>
			</plugin>

			<plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <configuration>
                    <systemPropertyVariables>
                        <javax.xml.accessExternalDTD>all</javax.xml.accessExternalDTD>
                    </systemPropertyVariables>
                </configuration>
            </plugin>

			<plugin>
				<groupId>org.apache.felix</groupId>
				<artifactId>maven-bundle-plugin</artifactId>
				<version>${maven-bundle-plugin.version}</version>
				<extensions>true</extensions>
				<configuration>
					<instructions>
						<!-- TODO: Embed dependencies -->
						<Bundle-SymbolicName>org.cytoscape.keggscape</Bundle-SymbolicName>
						<Bundle-Version>${project.version}</Bundle-Version>
						<!-- This tells the bundle plugin which packages should not be exported. -->
						<Private-Package>org.cytoscape.keggscape.internal.*</Private-Package>
						<Bundle-Activator>org.cytoscape.keggscape.internal.CyActivator</Bundle-Activator>
						<Embed-Dependency>*;scope=!provided|test;groupId=!org.cytoscape</Embed-Dependency>
						<Embed-Transitive>true</Embed-Transitive>
						<Import-Package>*;resolution:=optional</Import-Package><commit_msg>Update maven-compiler-plugin config for java11<commit_after><project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
	<properties>
		<cytoscape.api.version>3.8.0</cytoscape.api.version>

		<maven-compiler-plugin.version>3.8.0</maven-compiler-plugin.version>
		<maven-bundle-plugin.version>4.1.0</maven-bundle-plugin.version>

		<osgi.api.version>6.0.0</osgi.api.version>

		<bundle.symbolicName>org.cytoscape.keggscape</bundle.symbolicName>
		<bundle.namespaece>org.cytoscape.keggscape</bundle.namespaece>
		<bundle.name>KEGGscape</bundle.name>
	</properties>

	<modelVersion>4.0.0</modelVersion>
	<groupId>org.cytoscape</groupId>
	<artifactId>keggscape</artifactId>
	<version>0.9.0</version>
	<name>KEGGScape</name>

	<packaging>bundle</packaging>

	<build>
		<finalName>KEGGscape</finalName>
		<plugins>
			<plugin>
				<groupId>org.jvnet.jaxb2.maven2</groupId>
				<artifactId>maven-jaxb2-plugin</artifactId>
				<version>0.14.0</version>
				<executions>
					<execution>
						<goals>
							<goal>generate</goal>
						</goals>
						<configuration>
							<extension>true</extension>
							<schemaLanguage>DTD</schemaLanguage>
							<schemaIncludes>
								<schemaInclude>*.dtd</schemaInclude>
							</schemaIncludes>
							<bindingIncldes>
								<bindingInclde>*.jaxb</bindingInclde>
							</bindingIncldes>
							<generateDirectory>${basedir}/src/main/java</generateDirectory>
							<generatePackage>org.cytoscape.keggscape.internal.generated</generatePackage>
						</configuration>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>${maven-compiler-plugin.version}</version>
				<extensions>true</extensions>
				<configuration>
					<source>11</source>
					<target>11</target>
					<!-- <encoding>UTF-8</encoding> -->
					<optimize>true</optimize>
					<showWarnings>true</showWarnings>
					<showDeprecation>true</showDeprecation>
					<compilerArguments>
						<Xmaxwarns>10000</Xmaxwarns>
						<Xmaxerrs>10000</Xmaxerrs>
					</compilerArguments>
				</configuration>
			</plugin>

			<plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <configuration>
                    <systemPropertyVariables>
                        <javax.xml.accessExternalDTD>all</javax.xml.accessExternalDTD>
                    </systemPropertyVariables>
                </configuration>
            </plugin>

			<plugin>
				<groupId>org.apache.felix</groupId>
				<artifactId>maven-bundle-plugin</artifactId>
				<version>${maven-bundle-plugin.version}</version>
				<extensions>true</extensions>
				<configuration>
					<instructions>
						<!-- TODO: Embed dependencies -->
						<Bundle-SymbolicName>org.cytoscape.keggscape</Bundle-SymbolicName>
						<Bundle-Version>${project.version}</Bundle-Version>
						<!-- This tells the bundle plugin which packages should not be exported. -->
						<Private-Package>org.cytoscape.keggscape.internal.*</Private-Package>
						<Bundle-Activator>org.cytoscape.keggscape.internal.CyActivator</Bundle-Activator>
						<Embed-Dependency>*;scope=!provided|test;groupId=!org.cytoscape</Embed-Dependency>
						<Embed-Transitive>true</Embed-Transitive>
						<Import-Package>*;resolution:=optional</Import-Package>
{'fraction_non_alphanumeric': 0.1528588098016336, 'fraction_numerical': 0.015023337222870478, 'mean_word_length': 3.309868007542426, 'pattern_counts': {'":': 0, '<': 261, '<?xml version=': 0, '>': 261, 'https://': 0, 'lorem ipsum': 0, 'www.': 2, 'xml': 8}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2900411', 'n_tokens_mistral': 2871, 'n_tokens_neox': 2180, 'n_words': 216}