<commit_before>class Vsearch < Formula
  desc "Versatile open-source tool for microbiome analysis"
  homepage "https://github.com/torognes/vsearch"
  url "https://github.com/torognes/vsearch/archive/v2.20.0.tar.gz"
  sha256 "450254695daf747e80bfc2665a6467d702eeab8f73f6008aed2bba94ddbf7dd4"
  license any_of: ["BSD-2-Clause", "GPL-3.0-or-later"]

  bottle do
    sha256 cellar: :any_skip_relocation, arm64_monterey: "d650a1688c51b8342f3c1377c0bbf15e70ea8671ea1894952c6f0f4955bd37b2"
    sha256 cellar: :any_skip_relocation, arm64_big_sur:  "2e868227ea7310388d437a7512d89b4b3e01a466f168e01f924fb48640f5a97e"
    sha256 cellar: :any_skip_relocation, monterey:       "ed29dc48730e5eff451d0ff077d0e81a80cbd4a238922ba8e0b2b1cedc23dbc4"
    sha256 cellar: :any_skip_relocation, big_sur:        "7563a8abc26edd69dbbb1704aa702385c5925cd72e3c3177eb73ec49bab1201f"
    sha256 cellar: :any_skip_relocation, catalina:       "f68a81a840b6684d83e6497b87103278a037c859dfc12f06035f73b606dec778"
    sha256 cellar: :any_skip_relocation, x86_64_linux:   "1a992ff5bd5edb9c83ad9d2fd969062ecdceb9ded4db23c912e11cd6ccc58789"
  end

  depends_on "autoconf" => :build
  depends_on "automake" => :build

  def install
    system "./autogen.sh"
    system "./configure", "--disable-dependency-tracking",
                          "--disable-silent-rules",
                          "--prefix=#{prefix}"
    system "make"
    system "make", "install"
  end

  test do
    (testpath/"test.fasta").write <<~EOS
      >U00096.2:1-70
      AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
    EOS
    system bin/"vsearch", "--rereplicate", "test.fasta", "--output", "output.txt"
    assert_predicate testpath/"output.txt", :exist?
  end
end<commit_msg>vsearch: update 2.20.0 bottle.<commit_after>class Vsearch < Formula
  desc "Versatile open-source tool for microbiome analysis"
  homepage "https://github.com/torognes/vsearch"
  url "https://github.com/torognes/vsearch/archive/v2.20.0.tar.gz"
  sha256 "450254695daf747e80bfc2665a6467d702eeab8f73f6008aed2bba94ddbf7dd4"
  license any_of: ["BSD-2-Clause", "GPL-3.0-or-later"]

  bottle do
    sha256 cellar: :any_skip_relocation, arm64_monterey: "01ab9535766d694628de1bf150c114b4334b2066a65c58428e600726d528d85d"
    sha256 cellar: :any_skip_relocation, arm64_big_sur:  "3bb0dc6d093942ec04803810acddea55f34db5a46ebb7d47e19c8276c61a633a"
    sha256 cellar: :any_skip_relocation, monterey:       "67e753835a4eec6af2c192f20627c4e6d9ed0ce5439ed10c04f3e40d06508ee2"
    sha256 cellar: :any_skip_relocation, big_sur:        "40498cd86223b4e7291b11760a70c340252222319e3acb37746bc3c50de40d3d"
    sha256 cellar: :any_skip_relocation, catalina:       "422b67ce914693d35d296cf113da29a3e94e32ed7cfebc524faf8f2f5992c135"
    sha256 cellar: :any_skip_relocation, x86_64_linux:   "94914f2f2e82c315471aebac48b17da3b09242c742608febafaf92dfaeb69302"
  end

  depends_on "autoconf" => :build
  depends_on "automake" => :build

  def install
    system "./autogen.sh"
    system "./configure", "--disable-dependency-tracking",
                          "--disable-silent-rules",
                          "--prefix=#{prefix}"
    system "make"
    system "make", "install"
  end

  test do
    (testpath/"test.fasta").write <<~EOS
      >U00096.2:1-70
      AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
    EOS
    system bin/"vsearch", "--rereplicate", "test.fasta", "--output", "output.txt"
    assert_predicate testpath/"output.txt", :exist?
  end
end
{'fraction_non_alphanumeric': 0.0993434199257779, 'fraction_numerical': 0.1872680559520411, 'mean_word_length': 4.44945567651633, 'pattern_counts': {'":': 0, '<': 9, '<?xml version=': 0, '>': 9, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 2, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6049427', 'n_tokens_mistral': 1806, 'n_tokens_neox': 1452, 'n_words': 186}