<commit_before>appdirs
argh
bamtools
bcbio-prioritize
bcbio-variation-recall
bcbio_monitor
bcftools
bedtools
blast
bleach
bmfilter
bmtagger
bmtool
bottle
bwa
bx-python
chanjo
chromhmm
cnvkit
cramtools
cutadapt
cyordereddict
cyvcf2
extract_fullseq
fastqc
fisher
freebayes
gatk-framework
gemini
geneimpacts
gffutils
grabix
htslib
httplib2
httpretty
hubward
inheritance
ipython-cluster-helper
java-jdk
last
lofreq
lumpy-sv
mafft
mageck
mageck-vispr
mash
metaseq
metaseq-all
metasv
mosaik
moto
muscle
mvicuna
mygene
netifaces
novoalign
oncofuse
peakzilla
perl
perl-app-cpanminus
perl-threaded
picard
prinseq
py-graphviz
pybedtools
pyfaidx
pysam
python-levenshtein
python-wget
pythonpy
pyvcf
qsignature
qualimap
rtg-tools
s3gof3r
sambamba
samtools
simple_sv_annotation
simplejson
snakemake
snpeff
spades
srprism
subread
sure
tbb
toposort
trackhub
trimmomatic
trinity
ucsc-axttomaf
ucsc-bedgraphtobigwig
ucsc-bedtobigbed
ucsc-bigbedtobed
ucsc-bigwigsummary
ucsc-bigwigtobedgraph
ucsc-fatotwobit
ucsc-genepredtomafframes
ucsc-gtftogenepred
ucsc-hgloadmaf<commit_msg>Also include OSX builds for python deps<commit_after>appdirs
argh
bamtools
bcbio-prioritize
bcbio-variation-recall
bcbio_monitor
bcdoc
bcftools
bedtools
blast
bleach
bmfilter
bmtagger
bmtool
bottle
bwa
bx-python
chanjo
chromhmm
cnvkit
cramtools
cutadapt
cyordereddict
cyvcf2
extract_fullseq
fastqc
fisher
freebayes
gatk-framework
gemini
geneimpacts
gffutils
grabix
htslib
httplib2
httpretty
hubward
inheritance
ipython-cluster-helper
java-jdk
jmespath
joblib
last
lofreq
lumpy-sv
mafft
mageck
mageck-vispr
mash
metaseq
metaseq-all
metasv
mosaik
moto
muscle
mvicuna
mygene
netifaces
novoalign
oncofuse
peakzilla
perl
perl-app-cpanminus
perl-threaded
picard
prinseq
py-graphviz
pybedtools
pyfaidx
pysam
python-levenshtein
python-wget
pythonpy
pyvcf
qsignature
qualimap
rsa
rtg-tools
s3gof3r
sambamba
samtools
simple_sv_annotation
simplejson
snakemake
snpeff
spades
srprism
subread
sure
tbb
toposort
trackhub
trimmomatic
trinity
ucsc-axttomaf
ucsc-bedgraphtobigwig
ucsc-bedtobigbed
ucsc-bigbedtobed
ucsc-bigwigsummary
ucsc-bigwigtobedgraph
ucsc-fatotwobit
ucsc-genepredtomafframes
ucsc-gtftogenepred
ucsc-hgloadmaf
{'fraction_non_alphanumeric': 0.02857142857142857, 'fraction_numerical': 0.003686635944700461, 'mean_word_length': 7.192452830188679, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2594164', 'n_tokens_mistral': 990, 'n_tokens_neox': 952, 'n_words': 209}