<commit_before>{% from "base_macro.html" import header, flash_me, timeago %}
<!DOCTYPE HTML>
<html lang="en" xmlns="http://www.w3.org/1999/xhtml">

<head>
    <meta charset="utf-8">

    <title>{% block title %}{% endblock %} GeneNetwork 2</title>

    <meta name="description" content="">
    <meta name="author" content="">
    <script type="text/javascript">
     var pageLoadStart = Date.now();
    </script>
    <link rel="icon" type="image/png" sizes="64x64" href="/static/new/images/CITGLogo.png">
    <link rel="apple-touch-icon" type="image/png" sizes="64x64" href="/static/new/images/CITGLogo.png">
    <link REL="stylesheet" TYPE="text/css" href="{{ url_for('css', filename='bootstrap/css/bootstrap.css') }}" />
    <link REL="stylesheet" TYPE="text/css" href="/static/new/css/bootstrap-custom.css" />
    <link REL="stylesheet" TYPE="text/css" href="/static/new/css/non-responsive.css" />
    <link REL="stylesheet" TYPE="text/css" href="/static/new/css/docs.css" />
    <link rel="stylesheet" type="text/css" href="/static/new/css/colorbox.css"  />
    <!--<link rel="stylesheet" type="text/css" href="/static/new/css/main.css"  />-->
    <link rel="stylesheet" type="text/css" href="/static/new/css/parsley.css"  />
    <link rel="stylesheet" type="text/css" href="/static/new/css/broken_links.css"  />


    {% block css %}
    {% endblock %}

    <style>
        table.dataTable thead .sorting_asc {
            background-image: url({{ url_for("js", filename="DataTables/images/sort_asc_disabled.png") }});
        }
        table.dataTable thead .sorting_desc {
            background-image: url({{ url_for("js", filename="DataTables/images/sort_desc_disabled.png") }});
        }
    </style>
</head>

<body style="width: 100%">
    <!-- Navbar ================================================== -->

    <div class="navbar navbar-inverse navbar-static-top pull-left" role="navigation" style="width: 100%; min-width: 850px; white-space: nowrap;">
    <!--<div class="navbar navbar-default" style="width: 100%; white-space: nowrap;">-->
            <div class="container-fluid" style="width: 100%;">
                <!-- Brand and toggle get grouped for better mobile display -->
                <!---
                <div class="navbar-header">
                  <a class="navbar-brand" href="/">GeneNetwork</a>
                </div>
                -->

                <!-- Collect the nav links, forms, and other content for toggling -->
                <div>
                    <ul class="nav navbar-nav">
                        <li class="" style="margin-right: 20px;">
                            <a href="/" style="font-weight: bold;">GeneNetwork</a>
                        </li>
                        <li class="">
                            <a href="/help" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Intro <span class="caret"></a>
                            <ul class="dropdown-menu">
                                <li><a href="/intro">Intro</a></li>
                                <li><a href="/submit_trait">Submit Trait</a></li>
                                <li><a href="http://genenetwork.org/webqtl/main.py?FormID=batSubmit">Batch Submission</a></li>
                            </ul>
                        </li>
                        <li class="">
                            <a href="/help" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Help <span class="caret"></a>
                            <ul class="dropdown-menu">
                              <li><a href="{{ url_for('references_blueprint.references') }}">References</a></li>
                              <li><a href="/tutorials">Webinars, Tutorials/Primers</a></li>
                              <li><a href="{{ url_for('blogs_blueprint.blogs_list') }}">Blogs</a></li>
                              <li><a href="{{ url_for('glossary_blueprint.glossary') }}">Glossary of Term</a></li>
                              <li><a href="http://gn1.genenetwork.org/faq.html">FAQ</a></li>
                              <li><a href="{{ url_for('policies_blueprint.policies') }}">Policies</a></li>
                              <li><a href="{{ url_for('links_blueprint.links') }}">Links</a></li>
                              <li><a href="{{ url_for('facilities_blueprint.facilities') }}">Facilities</a></li>
                              <li><a href="{{ url_for('environments_blueprint.environments') }}">Environments</a></li>
                              <li><a href="/news">GN1 News</a></li>
                            </ul>
                        </li>
                        <li class="">
                                <a href="/help" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Tools <span class="caret"></a>
                                <ul class="dropdown-menu">
                                  <li><a href="/snp_browser">Variant Browser</a></li>
                                  <li><a href="http://bnw.genenetwork.org/sourcecodes/home.php">Bayesian Network Webserver</a></li>
                                  <li><a href="https://systems-genetics.org/">Systems Genetics PheWAS</a></li>
                                  <li><a href="http://ucscbrowser.genenetwork.org/">Genome Browser</a></li>
                                  <li><a href="http://power.genenetwork.org">BXD Power Calculator</a></li>
                                  <li><a href="{{url_for('jupyter_notebooks.launcher')}}">Jupyter Notebooks</a></li>
                                  <li><a href="http://datafiles.genenetwork.org">Interplanetary File System</a></li>
                                </ul>
                        </li>
                        {% if g.user_session %}
                        <li class="">
                            <a href="/collections/list">Collections
                                <span class="badge badge-info">{{ g.user_session.num_collections }}</span>
                            </a>
                        </li>
                        <li class="">
                            <a href="/repositories" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Source Code <span class="caret"></a>
                            <ul class="dropdown-menu">
                              <li><a href="https://github.com/genenetwork/genenetwork2">GN2 Source Code</a></li>
                              <li><a href="https://github.com/genenetwork/genenetwork">GN1 Source Code</a></li>
                              <li><a href="https://github.com/genenetwork/sysmaintenance">System Maintenance Code</a></li>
                              <li><a href="https://github.com/genenetwork/genenetwork2/blob/testing/doc/API_readme.md">REST API Documentation</a></li>
                            </ul>
                        </li>
                        {% if g.user_session.logged_in %}
                        <li class="">
                            <a href="/edit_account_settings" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">{% if g.user_session.user_email %}{{ g.user_session.user_email }}{% else %}User Account Settings{% endif %}<span class="caret"></a>
                            <ul class="dropdown-menu">
                                <li><a id="manage_user" title="User Options" href="/user/manage">User Options</a></li>
                                <li><a id="manage_groups" title="Manage Groups" href="/groups/manage">Manage Groups</a></li>
                            </ul>
                        </li>
                        {% endif %}
                        <li class="">
                            {% if g.user_session.logged_in %}
                            <a id="login_out" title="Signed in as {{ g.user_session.user_name }}" href="/n/logout">Sign out</a>
                            {% else %}
                            <a id="login_in" href="/n/login">Sign in</a>
                            {% endif %}
                        </li>
                        {% endif %}
                        <!--
                        <li style="margin-left: 20px;">
                            <a href="http://gn2-staging.genenetwork.org" style="font-weight: bold;" >Use Staging Branch</a>
                        </li>
                        -->
                    </ul>
                </div>
            </div>
    </div>

    <div class="container-fluid" style="width: 100%; min-width: 650px; position: relative; background-color: #d5d5d5; height: 84px;">

        <form method="get" action="/gsearch">
            <div class="row" style="width: 100%; position: absolute; bottom: 0; top: 30px;">
                <select style="width: 160px; margin-top: 15px; margin-left: 20px;" name="type">
                    <option value="gene">Genes / Molecules</option>
                    <option value="phenotype" {% if type=="phenotype" %}selected{% endif %}>Phenotypes</option>
                </select>
                <input class="btn btn-primary" style="width: 100px; margin-left: 10px;" type="submit" value="Search All">
                <input style="width: 50%; margin-top: 15px; margin-left: 10px;" type="text" name="terms" required>
            </div>
        </form>
    </div>

    {% block content %}
    {% endblock %}

    <footer class="footer">
      <div class="row" style="margin: 10px; width: 100%; min-width: 1200px;">
        <div class="col-xs-6">
            <p>	Web services initiated January, 1994 as
            <a href="http://www.ncbi.nlm.nih.gov/pubmed?term=8043953"><commit_msg>Move global search button and add glyphicon<commit_after>{% from "base_macro.html" import header, flash_me, timeago %}
<!DOCTYPE HTML>
<html lang="en" xmlns="http://www.w3.org/1999/xhtml">

<head>
    <meta charset="utf-8">

    <title>{% block title %}{% endblock %} GeneNetwork 2</title>

    <meta name="description" content="">
    <meta name="author" content="">
    <script type="text/javascript">
     var pageLoadStart = Date.now();
    </script>
    <link rel="icon" type="image/png" sizes="64x64" href="/static/new/images/CITGLogo.png">
    <link rel="apple-touch-icon" type="image/png" sizes="64x64" href="/static/new/images/CITGLogo.png">
    <link REL="stylesheet" TYPE="text/css" href="{{ url_for('css', filename='bootstrap/css/bootstrap.css') }}" />
    <link REL="stylesheet" TYPE="text/css" href="/static/new/css/bootstrap-custom.css" />
    <link REL="stylesheet" TYPE="text/css" href="/static/new/css/non-responsive.css" />
    <link REL="stylesheet" TYPE="text/css" href="/static/new/css/docs.css" />
    <link rel="stylesheet" type="text/css" href="/static/new/css/colorbox.css"  />
    <!--<link rel="stylesheet" type="text/css" href="/static/new/css/main.css"  />-->
    <link rel="stylesheet" type="text/css" href="/static/new/css/parsley.css"  />
    <link rel="stylesheet" type="text/css" href="/static/new/css/broken_links.css"  />


    {% block css %}
    {% endblock %}

    <style>
        table.dataTable thead .sorting_asc {
            background-image: url({{ url_for("js", filename="DataTables/images/sort_asc_disabled.png") }});
        }
        table.dataTable thead .sorting_desc {
            background-image: url({{ url_for("js", filename="DataTables/images/sort_desc_disabled.png") }});
        }
    </style>
</head>

<body style="width: 100%">
    <!-- Navbar ================================================== -->

    <div class="navbar navbar-inverse navbar-static-top pull-left" role="navigation" style="width: 100%; min-width: 850px; white-space: nowrap;">
    <!--<div class="navbar navbar-default" style="width: 100%; white-space: nowrap;">-->
            <div class="container-fluid" style="width: 100%;">
                <!-- Brand and toggle get grouped for better mobile display -->
                <!---
                <div class="navbar-header">
                  <a class="navbar-brand" href="/">GeneNetwork</a>
                </div>
                -->

                <!-- Collect the nav links, forms, and other content for toggling -->
                <div>
                    <ul class="nav navbar-nav">
                        <li class="" style="margin-right: 20px;">
                            <a href="/" style="font-weight: bold;">GeneNetwork</a>
                        </li>
                        <li class="">
                            <a href="/help" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Intro <span class="caret"></a>
                            <ul class="dropdown-menu">
                                <li><a href="/intro">Intro</a></li>
                                <li><a href="/submit_trait">Submit Trait</a></li>
                                <li><a href="http://genenetwork.org/webqtl/main.py?FormID=batSubmit">Batch Submission</a></li>
                            </ul>
                        </li>
                        <li class="">
                            <a href="/help" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Help <span class="caret"></a>
                            <ul class="dropdown-menu">
                              <li><a href="{{ url_for('references_blueprint.references') }}">References</a></li>
                              <li><a href="/tutorials">Webinars, Tutorials/Primers</a></li>
                              <li><a href="{{ url_for('blogs_blueprint.blogs_list') }}">Blogs</a></li>
                              <li><a href="{{ url_for('glossary_blueprint.glossary') }}">Glossary of Term</a></li>
                              <li><a href="http://gn1.genenetwork.org/faq.html">FAQ</a></li>
                              <li><a href="{{ url_for('policies_blueprint.policies') }}">Policies</a></li>
                              <li><a href="{{ url_for('links_blueprint.links') }}">Links</a></li>
                              <li><a href="{{ url_for('facilities_blueprint.facilities') }}">Facilities</a></li>
                              <li><a href="{{ url_for('environments_blueprint.environments') }}">Environments</a></li>
                              <li><a href="/news">GN1 News</a></li>
                            </ul>
                        </li>
                        <li class="">
                                <a href="/help" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Tools <span class="caret"></a>
                                <ul class="dropdown-menu">
                                  <li><a href="/snp_browser">Variant Browser</a></li>
                                  <li><a href="http://bnw.genenetwork.org/sourcecodes/home.php">Bayesian Network Webserver</a></li>
                                  <li><a href="https://systems-genetics.org/">Systems Genetics PheWAS</a></li>
                                  <li><a href="http://ucscbrowser.genenetwork.org/">Genome Browser</a></li>
                                  <li><a href="http://power.genenetwork.org">BXD Power Calculator</a></li>
                                  <li><a href="{{url_for('jupyter_notebooks.launcher')}}">Jupyter Notebooks</a></li>
                                  <li><a href="http://datafiles.genenetwork.org">Interplanetary File System</a></li>
                                </ul>
                        </li>
                        {% if g.user_session %}
                        <li class="">
                            <a href="/collections/list">Collections
                                <span class="badge badge-info">{{ g.user_session.num_collections }}</span>
                            </a>
                        </li>
                        <li class="">
                            <a href="/repositories" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">Source Code <span class="caret"></a>
                            <ul class="dropdown-menu">
                              <li><a href="https://github.com/genenetwork/genenetwork2">GN2 Source Code</a></li>
                              <li><a href="https://github.com/genenetwork/genenetwork">GN1 Source Code</a></li>
                              <li><a href="https://github.com/genenetwork/sysmaintenance">System Maintenance Code</a></li>
                              <li><a href="https://github.com/genenetwork/genenetwork2/blob/testing/doc/API_readme.md">REST API Documentation</a></li>
                            </ul>
                        </li>
                        {% if g.user_session.logged_in %}
                        <li class="">
                            <a href="/edit_account_settings" class="dropdow-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">{% if g.user_session.user_email %}{{ g.user_session.user_email }}{% else %}User Account Settings{% endif %}<span class="caret"></a>
                            <ul class="dropdown-menu">
                                <li><a id="manage_user" title="User Options" href="/user/manage">User Options</a></li>
                                <li><a id="manage_groups" title="Manage Groups" href="/groups/manage">Manage Groups</a></li>
                            </ul>
                        </li>
                        {% endif %}
                        <li class="">
                            {% if g.user_session.logged_in %}
                            <a id="login_out" title="Signed in as {{ g.user_session.user_name }}" href="/n/logout">Sign out</a>
                            {% else %}
                            <a id="login_in" href="/n/login">Sign in</a>
                            {% endif %}
                        </li>
                        {% endif %}
                        <!--
                        <li style="margin-left: 20px;">
                            <a href="http://gn2-staging.genenetwork.org" style="font-weight: bold;" >Use Staging Branch</a>
                        </li>
                        -->
                    </ul>
                </div>
            </div>
    </div>

    <div class="container-fluid" style="width: 100%; min-width: 650px; position: relative; background-color: #d5d5d5; height: 84px;">

        <form method="get" action="/gsearch">
            <div class="row" style="width: 100%; position: absolute; bottom: 0; top: 30px;">
                <button id="btsearch" class="btn btn-primary" style="margin-left: 20px;"><span class="glyphicon glyphicon-search"></span> Search All</button>
                <select style="width: 160px; margin-top: 15px; margin-left: 10px;" name="type">
                    <option value="gene">Genes / Molecules</option>
                    <option value="phenotype" {% if type=="phenotype" %}selected{% endif %}>Phenotypes</option>
                </select>
                <input style="width: 50%; margin-top: 15px; margin-left: 10px;" type="text" name="terms" required>
            </div>
        </form>
    </div>

    {% block content %}
    {% endblock %}

    <footer class="footer">
      <div class="row" style="margin: 10px; width: 100%; min-width: 1200px;">
        <div class="col-xs-6">
            <p>	Web services initiated January, 1994 as
            <a href="http://www.ncbi.nlm.nih.gov/pubmed?term=8043953">
{'fraction_non_alphanumeric': 0.17324742268041238, 'fraction_numerical': 0.009845360824742268, 'mean_word_length': 1.673787210584344, 'pattern_counts': {'":': 0, '<': 450, '<?xml version=': 0, '>': 450, 'https://': 10, 'lorem ipsum': 0, 'www.': 4, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 18, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7571342', 'n_tokens_mistral': 5840, 'n_tokens_neox': 5348, 'n_words': 969}