<commit_before><?
/******************************************************************************
Gff-cmp-cat can calculate the differences between overlapping genes and mRNAs 
between two gff3 files. It provides an easy way to make a comparison between an 
original gene model and a curated file; then shows the differences categorized 
into nine action types from features in gene, mRNA, exon, and CDS levels.

Version 1.0.6

Change log:
1.0.6 [Fix] Support web-based version. Command line version stops to maintain.
1.0.5 [Fix] Rename internally modified to modified within boundary coordinates.
1.0.4 [Add] Identify merge and split cases with UTR overlapping.
1.0.3 [Add] Output exon/CDS detailed results, users can find and switch it to
			enable/disable in the "Customized parameters" block.
	  [Fix] Revoke the condition rule "Overlapping to only one old" for
			exon/CDS in the check_extend_reduce() function.
1.0.2 [Fix] Reduce memory usage.
	  [Fix] Regular expression description for getting a feature ID/Parent ID.
1.0.1 [Add] memory limit setting with 768MB by default.
1.0.0 The first released version.

Feb/09/2015
(c) <NAME> 2014-2015 / MIT Licence
kinomoto[AT]sakura[DOT]idv[DOT]tw
******************************************************************************/

require_once('config.inc');

/*************************************<commit_msg>Update gff-cmp-cat.php<commit_after><?
/******************************************************************************
Gff-cmp-cat can calculate the differences between overlapping genes and mRNAs 
between two gff3 files. It provides an easy way to make a comparison between an 
original gene model and a curated file; then shows the differences categorized 
into eight action types from features in gene, mRNA, exon, and CDS levels.

Version 1.0.6

Change log:
1.0.6 [Fix] Support web-based version. Command line version stops to maintain.
1.0.5 [Fix] Rename internally modified to modified within boundary coordinates.
1.0.4 [Add] Identify merge and split cases with UTR overlapping.
1.0.3 [Add] Output exon/CDS detailed results, users can find and switch it to
			enable/disable in the "Customized parameters" block.
	  [Fix] Revoke the condition rule "Overlapping to only one old" for
			exon/CDS in the check_extend_reduce() function.
1.0.2 [Fix] Reduce memory usage.
	  [Fix] Regular expression description for getting a feature ID/Parent ID.
1.0.1 [Add] memory limit setting with 768MB by default.
1.0.0 The first released version.

Feb/09/2015
(c) <NAME> 2014-2015 / MIT Licence
kinomoto[AT]sakura[DOT]idv[DOT]tw
******************************************************************************/

require_once('config.inc');

/*************************************
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