<commit_before><tool id="macs2_predictd" name="MACS2 predictd" version="2.0.10.0">
    <description>Predict 'd' or fragment size from alignment results</description>
    <expand macro="requirements">
        <requirement type="package" version="3.0.1">R_3_0_1</requirement>
    </expand>
    <expand macro="version_command" />
    <macros>
        <import>macs2_macros.xml</import>
    </macros>
    <command>
        macs2 predictd
            #for $infile in $infiles:
                "$infile"
            #end if
            @tag_size@
            @effective_genome_size@
            --bw $band_width
            --mfold $mfoldlo $mfoldhi
            &gt; $outfile;<commit_msg>#for should end with #end for<commit_after><tool id="macs2_predictd" name="MACS2 predictd" version="2.0.10.0">
    <description>Predict 'd' or fragment size from alignment results</description>
    <expand macro="requirements">
        <requirement type="package" version="3.0.1">R_3_0_1</requirement>
    </expand>
    <expand macro="version_command" />
    <macros>
        <import>macs2_macros.xml</import>
    </macros>
    <command>
        macs2 predictd
            -i 
            #for $infile in $infiles:
                "$infile"
            #end for
            @tag_size@
            @effective_genome_size@
            --bw $band_width
            --mfold $mfoldlo $mfoldhi
            &gt; $outfile;
{'fraction_non_alphanumeric': 0.12688172043010754, 'fraction_numerical': 0.021505376344086023, 'mean_word_length': 2.1512415349887135, 'pattern_counts': {'":': 0, '<': 29, '<?xml version=': 0, '>': 29, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 2, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7513590', 'n_tokens_mistral': 453, 'n_tokens_neox': 446, 'n_words': 91}