<commit_before>beautifulsoup4
biopython
bioservices >= 1.5.0
cement >= 3.0.0
configobj
enum34
ete3
flask
flask_bcrypt
flask_cors
flask_debugtoolbar
flask_login
flask_marshmallow
flask_migrate
flask_restplus
flask_script
flask_sqlalchemy
gunicorn
jxmlease
numpy
git+https://github.com/KarrLab/obj_model.git#egg=obj_model-0.0.5
openbabel
openpyxl
pandas
pint
pronto
psycopg2
pubchempy
python_dateutil
python_levenshtein
python_libsbml
requests
requests_cache
scipy
setuptools
six
sqlalchemy
sqlalchemy_searchable
sqlalchemy_utils
git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils-0.0.1a5<commit_msg>switching pronto to GitHub source for term equality method<commit_after>beautifulsoup4
biopython
bioservices >= 1.5.0
cement >= 3.0.0
configobj
enum34
ete3
flask
flask_bcrypt
flask_cors
flask_debugtoolbar
flask_login
flask_marshmallow
flask_migrate
flask_restplus
flask_script
flask_sqlalchemy
gunicorn
jxmlease
numpy
git+https://github.com/KarrLab/obj_model.git#egg=obj_model-0.0.5
openbabel
openpyxl
pandas
pint
git+https://github.com/KarrLab/git+https://github.com/KarrLab/pronto.git#egg=pronto-0.12.0a >= 0.12.0a.git#egg=git+https://github.com/KarrLab/pronto.git#egg=pronto-0.12.0a >= 0.12.0a-0.12.0a >= 0.12.0a
psycopg2
pubchempy
python_dateutil
python_levenshtein
python_libsbml
requests
requests_cache
scipy
setuptools
six
sqlalchemy
sqlalchemy_searchable
sqlalchemy_utils
git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils-0.0.1a5
{'fraction_non_alphanumeric': 0.08632596685082873, 'fraction_numerical': 0.04143646408839779, 'mean_word_length': 7.140449438202247, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 10, 'https://': 7, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '182548', 'n_tokens_mistral': 664, 'n_tokens_neox': 621, 'n_words': 94}