<commit_before>from setuptools import setup

with open('README.md', 'rt') as f:
    long_description = f.read()

tests_require = ['pytest', 'pytest-runner']
setup(
    name='pyontutils',
    version='0.1.0',
    description='utilities for working with the NIF ontology, SciGraph, and turtle',
    long_description=long_description,
    long_description_content_type='text/markdown',
    url='https://github.com/tgbugs/pyontutils',
    author='<NAME>',
    author_email='<EMAIL>',
    license='MIT',
    classifiers=[
        'Development Status :: 4 - Beta',
        'License :: OSI Approved :: MIT License',
        'Programming Language :: Python :: 3.6',
        'Programming Language :: Python :: 3.7',
    ],
    keywords='ontology scigraph rdflib turtle ttl OWL',
    packages=['pyontutils'],
    python_requires='>=3.6',
    tests_require=tests_require,
    install_requires=[
        'docopt',
        'gitpython',
        'google-api-python-client',
        'hyputils',
        'ipython',
        'joblib',
        'lxml',
        'oauth2client',
        'ontquery>=0.0.7',
        'psutil',
        'pyyaml',
        'neurdflib',
        'requests',
        'ttlser',
    ],
    extras_require={'dev': ['hunspell',
                           ],
                    'test': tests_require,
                   },
    #package_data
    #data_files=[('resources',['pyontutils/resources/chebi-subset-ids.txt',])],  # not part of distro
    entry_points={
        'console_scripts': [
            'graphml-to-ttl=pyontutils.graphml_to_ttl:main',
            'ilxcli=pyontutils.ilxcli:main',
            'necromancy=pyontutils.necromancy:main',
            'ont-catalog=pyontutils.make_catalog:main',
            'ontload=pyontutils.ontload:main',
            'ontutils=pyontutils.ontutils:main',
            'overlaps=pyontutils.overlaps:main',
            'qnamefix=pyontutils.qnamefix:main',
            'scigraph-codegen=pyontutils.scigraph_codegen:main',
            'scigraph-deploy=pyontutils.scigraph_deploy:main',<commit_msg>update ontquery dep<commit_after>from setuptools import setup

with open('README.md', 'rt') as f:
    long_description = f.read()

tests_require = ['pytest', 'pytest-runner']
setup(
    name='pyontutils',
    version='0.1.0',
    description='utilities for working with the NIF ontology, SciGraph, and turtle',
    long_description=long_description,
    long_description_content_type='text/markdown',
    url='https://github.com/tgbugs/pyontutils',
    author='<NAME>',
    author_email='<EMAIL>',
    license='MIT',
    classifiers=[
        'Development Status :: 4 - Beta',
        'License :: OSI Approved :: MIT License',
        'Programming Language :: Python :: 3.6',
        'Programming Language :: Python :: 3.7',
    ],
    keywords='ontology scigraph rdflib turtle ttl OWL',
    packages=['pyontutils'],
    python_requires='>=3.6',
    tests_require=tests_require,
    install_requires=[
        'docopt',
        'gitpython',
        'google-api-python-client',
        'hyputils',
        'ipython',
        'joblib',
        'lxml',
        'oauth2client',
        'ontquery>=0.0.8',
        'psutil',
        'pyyaml',
        'neurdflib',
        'requests',
        'ttlser',
    ],
    extras_require={'dev': ['hunspell',
                           ],
                    'test': tests_require,
                   },
    #package_data
    #data_files=[('resources',['pyontutils/resources/chebi-subset-ids.txt',])],  # not part of distro
    entry_points={
        'console_scripts': [
            'graphml-to-ttl=pyontutils.graphml_to_ttl:main',
            'ilxcli=pyontutils.ilxcli:main',
            'necromancy=pyontutils.necromancy:main',
            'ont-catalog=pyontutils.make_catalog:main',
            'ontload=pyontutils.ontload:main',
            'ontutils=pyontutils.ontutils:main',
            'overlaps=pyontutils.overlaps:main',
            'qnamefix=pyontutils.qnamefix:main',
            'scigraph-codegen=pyontutils.scigraph_codegen:main',
            'scigraph-deploy=pyontutils.scigraph_deploy:main',
{'fraction_non_alphanumeric': 0.14222658165767532, 'fraction_numerical': 0.006866110838646395, 'mean_word_length': 2.5012875536480688, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 11, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '151204', 'n_tokens_mistral': 1336, 'n_tokens_neox': 1295, 'n_words': 195}