<commit_before>{
    "title": "Curator history",
    "description": "Schema for tracking curator actions.",
    "id": "/profiles/curatorHistory.json",
    "$schema": "http://json-schema.org/draft-04/schema#",
    "type": "object",
    "required": ["operationType"],
    "identifyingProperties": ["uuid"],
    "additionalProperties": false,
    "mixinProperties": [
        { "$ref": "mixins.json#/schema_version" },
        { "$ref": "mixins.json#/uuid" },
        { "$ref": "mixins.json#/submitted" }
    ],
    "properties": {
        "schema_version": {
            "default": "1"
        },
        "operationType": {
            "title": "Curator operation type",
            "description": "The class of operation that the curator performed",
            "type": "string",
            "enum": [
                "add",
                "modify",
                "delete"
            ]
        },
        "primary": {
            "title": "Primary object",
            "description": "Reference to the primary object",
            "type": "string",
            "linkTo": [
                "article",
                "assessment",
                "experimental",
                "family",
                "gdm",
                "caseControl",
                "group",
                "individual",
                "pathogenicity",
                "provisionalClassification",
                "variant",
                "interpretation",
                "extra_evidence"
            ]
        },
        "hidden": {
            "title": "Hidden from Dashboard",
            "description": "Whether or not item should be hidden from dashboard",
            "type": "integer",
            "default": 0
        },
        "hadChildren": {
            "title": "Had Children",
            "description": "(Deleted) item had children associated with it",
            "type": "integer",
            "default": 0
        },
        "parentInfo": {
            "title": "Parent Info",
            "description": "Information of parent object",
            "type": "object",
            "additionalProperties": false,
            "properties": {
                "id": {
                    "title": "ID of Parent",
                    "description": "@id of Parent",
                    "type": "string"
                },
                "name": {
                    "title": "Name of Parent",
                    "description": "Name of Parent",
                    "type": "string"
                }
            }
        },
        "meta": {
            "title": "History meta",
            "description": "Type-dependent (@type) data about the history item",
            "type": "object",
            "additionalProperties": false,
            "properties": {
                "article": {
                    "title": "PMID added to GDM history",
                    "description": "History metadata for adding a PMID to a GDM",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "add",
                            "enum": [
                                "add"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the PMID",
                            "type": "string",
                            "linkTo": "gdm"
                        }
                    }
                },
                "gdm": {
                    "title": "OMIM ID change to GDM history",
                    "description": "History metadata for changing/adding an OMIM ID to a GDM",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "add",
                            "enum": [
                                "add",
                                "omim"
                            ]
                        },
                        "omimId": {
                            "title": "OMIM ID",
                            "description": "New OMIM ID for the GDM",
                            "type": "string"
                        },
                        "gene": {
                            "title": "HGNC Symbol",
                            "description": "HGNC Symbol of gene.",
                            "type": "string",
                            "linkTo": "gene"
                        },
                        "disease": {
                            "title": "Orpha ID",
                            "description": "Unique id for Orphanet phenotypes.",
                            "type": "string",
                            "linkTo": "orphaPhenotype"
                        }
                    }
                },
                "caseControl": {
                    "title": "Case Control history",
                    "description": "History metadata for case control",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the case control",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the case control provides evidence for",
                            "type": "string",
                            "linkTo": "article"
                        }
                    }
                },
                "group": {
                    "title": "Group history",
                    "description": "History metadata for groups",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the group",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the group provides evidence for",
                            "type": "string",
                            "linkTo": "article"
                        }
                    }
                },
                "family": {
                    "title": "Family history",
                    "description": "History metadata for families",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the family",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "group": {
                            "title": "Group",
                            "description": "Group that's the object of the family",
                            "type": "string",
                            "linkTo": "group"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the family provides evidence for",
                            "type": "string",
                            "linkTo": "article"
                        }
                    }
                },
                "individual": {
                    "title": "Individual history",
                    "description": "History metadata for individuals",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the individual",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "group": {
                            "title": "Group",
                            "description": "Group that's the object of the individual",
                            "type": "string",
                            "linkTo": "group"
                        },
                        "family": {
                            "title": "Family",
                            "description": "Family that's the object of the individual",
                            "type": "string",
                            "linkTo": "family"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the individual provides evidence for",
                            "type": "string",
                            "linkTo": "article"
                        }
                    }
                },
                "experimental": {
                    "title": "Experimental history",
                    "description": "History metadata for experimental data",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the experimental data",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the experimental data provides evidence for",
                            "type": "string",
                            "linkTo": "article"
                        }
                    }
                },
                "provisionalClassification": {
                    "title": "Provisional classification history",
                    "description": "History metadata for provisional classifications",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM for the provisional classification",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "alteredClassification": {
                            "title": "Classification",
                            "description": "User-altered provisional classification",
                            "type": "string"
                        }
                    }
                },
                "pathogenicity": {
                    "title": "Pathogenicity history",
                    "description": "History metadata for variant pathogenicity additions and modifications",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "variantId": {
                            "title": "Variant ID",
                            "description": "Historical ID of the variant this pathogenicity evaluates",
                            "type": "string"
                        },
                        "variant": {
                            "title": "Assessed variant",
                            "description": "Variant object for the pathogenicity",
                            "type": "string",
                            "linkTo": "variant"
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the pathogenicity",
                            "type": "string",
                            "linkTo": "gdm"
                        }
                    }
                },
                "assessment": {
                    "title": "Assessment history",
                    "description": "History metadata for assessments",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "enum": [
                                "pathogenicity",
                                "segregation",
                                "experimental"
                            ]
                        },
                        "value": {
                            "title": "Value",
                            "description": "Value of assessment",
                            "type": "string",
                            "enum": [
                                "Not Assessed",
                                "Supports",
                                "Review",
                                "Contradicts"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM for the object being assessed",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "experimental": {
                            "title": "Assessed experimental data",
                            "description": "Experimental data object being assessed",
                            "type": "string",
                            "linkTo": "experimental"
                        },
                        "family": {
                            "title": "Assessed family segregation",
                            "description": "Family of segregation object being assessed",
                            "type": "string",
                            "linkTo": "family"
                        },
                        "pathogenicity": {
                            "title": "Assessed pathogenicity",
                            "description": "Pathogenicity object being assessed",
                            "type": "string",
                            "linkTo": "pathogenicity"
                        },
                        "variant": {
                            "title": "Variant",
                            "description": "Variant associated with the given pathogenicity",
                            "type": "string",
                            "linkTo": "variant"
                        }
                    }
                },
                "interpretation": {
                    "title": "VCI interpretation history",
                    "description": "History metadata for VCI interpretation",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "variant": {
                            "title": "Variant",
                            "description": "Variant for the interpretation",
                            "type": "string",
                            "linkTo": "variant"
                        },
                        "disease": {
                            "title": "Disease",
                            "description": "Disease associated with the interpretation",
                            "type": "string",
                            "linkTo": "orphaPhenotype"
                        },
                        "modeInheritance": {
                            "title": "Mode of Inheritance",
                            "description": "Mode of inheritance associated with the interpretation",
                            "type": "string"
                        },
                        "mode": {
                            "title": "Specific mode of change",
                            "description": "Specific mode of change",
                            "type": "string"
                        }
                    }
                }
            }
        }
    },
    "columns": {
        "operationType": {
            "title": "Curator operation type",
            "type": "string"
        },
        "primary": {
            "title": "Primary object information",
            "type": "object"
        },
        "hidden": {
            "title": "Hidden",
            "type": "integer"
        },
        "hadChildren": {
            "title": "Had Children",
            "type": "integer"
        },
        "parentInfo.id": {
            "title": "Parent @id",
            "type": "string"
        },
        "parentInfo.name": {
            "title": "Parent Name",
            "type": "string"
        },
        "meta.article.gdm": {
            "title": "GDM of PMID",
            "type": "string"
        },
        "meta.caseControl.gdm": {
            "title": "Case-Control GDM",
            "type": "string"
        },
        "meta.caseControl.article": {
            "title": "Case-Control article",
            "type": "string"
        },
        "meta.group.gdm": {
            "title": "Group GDM",
            "type": "string"
        },
        "meta.group.article": {
            "title": "Group article",
            "type": "string"
        },
        "meta.family.gdm": {
            "title": "Family GDM",
            "type": "string"
        },
        "meta.family.group": {
            "title": "Family group",
            "type": "string"
        },
        "meta.family.article": {
            "title": "Family article",
            "type": "string"
        },
        "meta.individual.gdm": {
            "title": "Individual GDM",
            "type": "string"
        },
        "meta.individual.group": {
            "title": "Individual group",
            "type": "string"
        },
        "meta.individual.family": {
            "title": "Individual family",
            "type": "string"
        },
        "meta.individual.article": {
            "title": "Individual article",
            "type": "string"
        },
        "meta.provisionalClassification": {
            "title": "Provisional classification meta",
            "type": "string"
        },
        "meta.provisionalClassification.gdm": {
            "title": "Provisional classification GDM",
            "type": "string"
        },
        "meta.experimental.gdm": {
            "title": "Experimental data GDM",
            "type": "string"
        },
        "meta.experimental.article": {
            "title": "Experimental data article",
            "type": "string"
        },
        "meta.gdm.omimId": {
            "title": "OMIM ID change to GDM history",
            "type": "string"
        },
        "meta.gdm.gene": {
            "title": "HGNC Symbol",
            "type": "string"
        },
        "meta.gdm.disease": {
            "title": "Orpha ID",
            "type": "string"
        },
        "meta.interpretation.variant": {
            "title": "Variant ID",
            "type": "string"
        },
        "meta.interpretation.disease": {
            "title": "Orpha ID",
            "type": "string"
        },
        "meta.interpretation.modeInheritance": {
            "title": "Mode of Inheritance",
            "type": "string"
        },
        "meta.interpretation.mode": {
            "title": "Mode of change",
            "type": "string"
        },
        "meta.pathogenicity": {
            "title": "Pathogenicity",
            "type": "string"
        },
        "meta.assessment": {
            "title": "Assessment metadata",
            "type": "object"
        },
        "date_created": {
            "title": "Creation Date",
            "type": "string"
        },
        "uuid": {
            "title": "UUID",
            "type": "string"
        }
    }
}
<commit_msg>Linking the 'disease' property to the 'disease' object rather than the orphaPhenotype object.<commit_after>{
    "title": "Curator history",
    "description": "Schema for tracking curator actions.",
    "id": "/profiles/curatorHistory.json",
    "$schema": "http://json-schema.org/draft-04/schema#",
    "type": "object",
    "required": ["operationType"],
    "identifyingProperties": ["uuid"],
    "additionalProperties": false,
    "mixinProperties": [
        { "$ref": "mixins.json#/schema_version" },
        { "$ref": "mixins.json#/uuid" },
        { "$ref": "mixins.json#/submitted" }
    ],
    "properties": {
        "schema_version": {
            "default": "1"
        },
        "operationType": {
            "title": "Curator operation type",
            "description": "The class of operation that the curator performed",
            "type": "string",
            "enum": [
                "add",
                "modify",
                "delete"
            ]
        },
        "primary": {
            "title": "Primary object",
            "description": "Reference to the primary object",
            "type": "string",
            "linkTo": [
                "article",
                "assessment",
                "experimental",
                "family",
                "gdm",
                "caseControl",
                "group",
                "individual",
                "pathogenicity",
                "provisionalClassification",
                "variant",
                "interpretation",
                "extra_evidence"
            ]
        },
        "hidden": {
            "title": "Hidden from Dashboard",
            "description": "Whether or not item should be hidden from dashboard",
            "type": "integer",
            "default": 0
        },
        "hadChildren": {
            "title": "Had Children",
            "description": "(Deleted) item had children associated with it",
            "type": "integer",
            "default": 0
        },
        "parentInfo": {
            "title": "Parent Info",
            "description": "Information of parent object",
            "type": "object",
            "additionalProperties": false,
            "properties": {
                "id": {
                    "title": "ID of Parent",
                    "description": "@id of Parent",
                    "type": "string"
                },
                "name": {
                    "title": "Name of Parent",
                    "description": "Name of Parent",
                    "type": "string"
                }
            }
        },
        "meta": {
            "title": "History meta",
            "description": "Type-dependent (@type) data about the history item",
            "type": "object",
            "additionalProperties": false,
            "properties": {
                "article": {
                    "title": "PMID added to GDM history",
                    "description": "History metadata for adding a PMID to a GDM",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "add",
                            "enum": [
                                "add"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the PMID",
                            "type": "string",
                            "linkTo": "gdm"
                        }
                    }
                },
                "gdm": {
                    "title": "OMIM ID change to GDM history",
                    "description": "History metadata for changing/adding an OMIM ID to a GDM",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "add",
                            "enum": [
                                "add",
                                "omim"
                            ]
                        },
                        "omimId": {
                            "title": "OMIM ID",
                            "description": "New OMIM ID for the GDM",
                            "type": "string"
                        },
                        "gene": {
                            "title": "HGNC Symbol",
                            "description": "HGNC Symbol of gene.",
                            "type": "string",
                            "linkTo": "gene"
                        },
                        "disease": {
                            "title": "Unique ID of disease term",
                            "description": "Unique id (Orphanet, DOID, OMIM or NCIt) or free text.",
                            "type": "string",
                            "linkTo": "disease"
                        }
                    }
                },
                "caseControl": {
                    "title": "Case Control history",
                    "description": "History metadata for case control",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the case control",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the case control provides evidence for",
                            "type": "string",
                            "linkTo": "article"
                        }
                    }
                },
                "group": {
                    "title": "Group history",
                    "description": "History metadata for groups",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the group",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the group provides evidence for",
                            "type": "string",
                            "linkTo": "article"
                        }
                    }
                },
                "family": {
                    "title": "Family history",
                    "description": "History metadata for families",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the family",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "group": {
                            "title": "Group",
                            "description": "Group that's the object of the family",
                            "type": "string",
                            "linkTo": "group"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the family provides evidence for",
                            "type": "string",
                            "linkTo": "article"
                        }
                    }
                },
                "individual": {
                    "title": "Individual history",
                    "description": "History metadata for individuals",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the individual",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "group": {
                            "title": "Group",
                            "description": "Group that's the object of the individual",
                            "type": "string",
                            "linkTo": "group"
                        },
                        "family": {
                            "title": "Family",
                            "description": "Family that's the object of the individual",
                            "type": "string",
                            "linkTo": "family"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the individual provides evidence for",
                            "type": "string",
                            "linkTo": "article"
                        }
                    }
                },
                "experimental": {
                    "title": "Experimental history",
                    "description": "History metadata for experimental data",
                    "type": "object",
                    "additionalProperties": false,
                    "properties": {
                        "operation": {
                            "title": "Operation",
                            "description": "Operation specific to this meta type",
                            "type": "string",
                            "default": "edit",
                            "enum": [
                                "edit"
                            ]
                        },
                        "gdm": {
                            "title": "GDM",
                            "description": "GDM that's the object of the experimental data",
                            "type": "string",
                            "linkTo": "gdm"
                        },
                        "article": {
                            "title": "Article",
                            "description": "GDM article the experimental data provides evidence for",
                            "type": "string",
                            "linkTo": "article"
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                    }
                },
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                    "description": "History metadata for provisional classifications",
                    "type": "object",
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                    "properties": {
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                },
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                            "enum": [
                                "edit"
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                            "title": "Variant ID",
                            "description": "Historical ID of the variant this pathogenicity evaluates",
                            "type": "string"
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                            "title": "Assessed variant",
                            "description": "Variant object for the pathogenicity",
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                            "linkTo": "variant"
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                            "title": "GDM",
                            "description": "GDM that's the object of the pathogenicity",
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                            "title": "Assessed experimental data",
                            "description": "Experimental data object being assessed",
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                            "linkTo": "experimental"
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                            "title": "Assessed family segregation",
                            "description": "Family of segregation object being assessed",
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                            "linkTo": "family"
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                            "title": "Assessed pathogenicity",
                            "description": "Pathogenicity object being assessed",
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                            "title": "Variant",
                            "description": "Variant associated with the given pathogenicity",
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                            "linkTo": "variant"
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                },
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                    "title": "VCI interpretation history",
                    "description": "History metadata for VCI interpretation",
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                            "title": "Disease",
                            "description": "Disease associated with the interpretation",
                            "type": "string",
                            "linkTo": "orphaPhenotype"
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                        "modeInheritance": {
                            "title": "Mode of Inheritance",
                            "description": "Mode of inheritance associated with the interpretation",
                            "type": "string"
                        },
                        "mode": {
                            "title": "Specific mode of change",
                            "description": "Specific mode of change",
                            "type": "string"
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                    }
                }
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    "columns": {
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            "title": "Primary object information",
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        },
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            "title": "Hidden",
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            "title": "Had Children",
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            "title": "Parent Name",
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        "meta.article.gdm": {
            "title": "GDM of PMID",
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        },
        "meta.caseControl.gdm": {
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        },
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            "type": "string"
        },
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            "title": "Provisional classification meta",
            "type": "string"
        },
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        },
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            "type": "string"
        },
        "meta.gdm.gene": {
            "title": "HGNC Symbol",
            "type": "string"
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            "type": "string"
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            "type": "string"
        },
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            "type": "string"
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            "title": "Mode of change",
            "type": "string"
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            "title": "Pathogenicity",
            "type": "string"
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            "title": "Assessment metadata",
            "type": "object"
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            "title": "Creation Date",
            "type": "string"
        },
        "uuid": {
            "title": "UUID",
            "type": "string"
        }
    }
}

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