<commit_before>#include "Log.h"
/*less
 * HierarchicalSRSImageToImageFilter.h
 *
 *  Created on: Apr 12, 2011
 *      Author: gasst
 */

#ifndef HIERARCHICALSRSIMAGETOIMAGEFILTER_H_
#define HIERARCHICALSRSIMAGETOIMAGEFILTER_H_
#include "SRSConfig.h"
#include "itkImageRegionIteratorWithIndex.h"
#include "itkImageRegionConstIterator.h"
#include "ImageUtils.h"
#include "itkImage.h"
#include "itkVectorImage.h"
#include <itkNumericTraitsVectorPixel.h>
#include <sstream>
#include "itkHistogramMatchingImageFilter.h"
#include "Graph.h"
#include "SegmentationGraph.h"
#include "BaseLabel.h"
#include "MRF-TRW-S.h"
#include "MRF-GC.h"
#include <itkNearestNeighborInterpolateImageFunction.h>
#include <itkLinearInterpolateImageFunction.h>
#include <itkVectorResampleImageFilter.h>
#include "itkResampleImageFilter.h"
#include "itkAffineTransform.h"
#include "itkLinearInterpolateImageFunction.h"
#include "itkVectorLinearInterpolateImageFunction.h"
#include "itkNearestNeighborInterpolateImageFunction.h"
#include "itkImageIterator.h"
#include "itkImageConstIteratorWithIndex.h"
#include "itkImageIteratorWithIndex.h"
#include "itkImageConstIterator.h"
#include "FilterUtils.hpp"
#include <itkImageAdaptor.h>
#include <itkAddPixelAccessor.h>
#include "itkDisplacementFieldCompositionFilter.h"
#include "itkBSplineInterpolateImageFunction.h"
#include "itkVectorImage.h"
#include "itkConstNeighborhoodIterator.h"
#include <itkVectorResampleImageFilter.h>
#include <itkResampleImageFilter.h>
#include "itkLinearInterpolateImageFunction.h"
#include "itkBSplineInterpolateImageFunction.h"
#include "itkNearestNeighborInterpolateImageFunction.h"
#include "itkVectorNearestNeighborInterpolateImageFunction.h"
#include "itkBSplineResampleImageFunction.h"
#include "itkRescaleIntensityImageFilter.h"
#include "itkSignedMaurerDistanceMapImageFilter.h"
#include <itkImageToImageFilter.h>
#include <itkBSplineDeformableTransform.h>
#include "itkImageRegionConstIteratorWithIndex.h"
#include <google/heap-profiler.h>
#include "ChamferDistanceTransform.h"
#include "itkCastImageFilter.h"
#include "Potential-SegmentationRegistration-Pairwise.h"
#include "MRF-FAST-PD.h"
namespace itk{
    template<class TImage, 
             class TLabelMapper,
             class TUnaryRegistrationPotential, 
             class TUnarySegmentationPotential,
             class TPairwiseSegmentationPotential,
             class TPairwiseRegistrationPotential          >
    class HierarchicalJRSImageToImageFilter: public itk::ImageToImageFilter<TImage,TImage>{
    public:
        typedef HierarchicalJRSImageToImageFilter Self;
        typedef ImageToImageFilter< TImage, TImage > Superclass;
        typedef SmartPointer< Self >        Pointer;
    
        /** Method for creation through the object factory. */
        itkNewMacro(Self);
        /** Run-time type information (and related methods). */
        itkTypeMacro(HierarchicalJRSImageToImageFilter, ImageToImageFilter);
    
        typedef TImage ImageType;
        static const int D=ImageType::ImageDimension;
        typedef typename  ImageType::PixelType PixelType;
        typedef typename  ImageType::Pointer ImagePointerType;
        typedef typename  ImageType::ConstPointer ConstImagePointerType;
        typedef typename ImageType::IndexType IndexType;<commit_msg>SRS: corrected JRS filter<commit_after>#include "Log.h"
/*less
 * HierarchicalSRSImageToImageFilter.h
 *
 *  Created on: Apr 12, 2011
 *      Author: gasst
 */

#ifndef HIERARCHICALSRSIMAGETOIMAGEFILTER_H_
#define HIERARCHICALSRSIMAGETOIMAGEFILTER_H_
#include "SRSConfig.h"
#include "itkImageRegionIteratorWithIndex.h"
#include "itkImageRegionConstIterator.h"
#include "ImageUtils.h"
#include "itkImage.h"
#include "itkVectorImage.h"
#include <itkNumericTraitsVectorPixel.h>
#include <sstream>
#include "itkHistogramMatchingImageFilter.h"
#include "Graph.h"
#include "BaseLabel.h"

#ifdef WITH_TRWS
#include "MRF-TRW-S.h"
#endif
#ifdef WITH_GCO
#include "MRF-GCO.h"
#endif
#ifdef WITH_OPENGM
#include "MRF-opengm.h"
#endif
#ifdef WITH_GC
#include "MRF-GC.h"
#endif
#include <itkNearestNeighborInterpolateImageFunction.h>
#include <itkLinearInterpolateImageFunction.h>
#include <itkVectorResampleImageFilter.h>
#include "itkResampleImageFilter.h"
#include "itkAffineTransform.h"
#include "itkLinearInterpolateImageFunction.h"
#include "itkVectorLinearInterpolateImageFunction.h"
#include "itkNearestNeighborInterpolateImageFunction.h"
#include "itkImageIterator.h"
#include "itkImageConstIteratorWithIndex.h"
#include "itkImageIteratorWithIndex.h"
#include "itkImageConstIterator.h"
#include "FilterUtils.hpp"
#include <itkImageAdaptor.h>
#include <itkAddPixelAccessor.h>
#include "itkDisplacementFieldCompositionFilter.h"
#include "itkBSplineInterpolateImageFunction.h"
#include "itkVectorImage.h"
#include "itkConstNeighborhoodIterator.h"
#include <itkVectorResampleImageFilter.h>
#include <itkResampleImageFilter.h>
#include "itkLinearInterpolateImageFunction.h"
#include "itkBSplineInterpolateImageFunction.h"
#include "itkNearestNeighborInterpolateImageFunction.h"
#include "itkVectorNearestNeighborInterpolateImageFunction.h"
#include "itkBSplineResampleImageFunction.h"
#include "itkRescaleIntensityImageFilter.h"
#include "itkSignedMaurerDistanceMapImageFilter.h"
#include <itkImageToImageFilter.h>
#include <itkBSplineDeformableTransform.h>
#include "itkImageRegionConstIteratorWithIndex.h"
#include <google/heap-profiler.h>
#include "ChamferDistanceTransform.h"
#include "itkCastImageFilter.h"
#include "Potential-SegmentationRegistration-Pairwise.h"


namespace SRS{
    template<class TImage, 
             class TLabelMapper,
             class TUnaryRegistrationPotential, 
             class TUnarySegmentationPotential,
             class TPairwiseSegmentationPotential,
             class TPairwiseRegistrationPotential          >
    class HierarchicalJRSImageToImageFilter: public itk::ImageToImageFilter<TImage,TImage>{
    public:
        typedef HierarchicalJRSImageToImageFilter Self;
        typedef ImageToImageFilter< TImage, TImage > Superclass;
        typedef itk::SmartPointer< Self >        Pointer;
    
        /** Method for creation through the object factory. */
        itkNewMacro(Self);
        /** Run-time type information (and related methods). */
        itkTypeMacro(HierarchicalJRSImageToImageFilter, ImageToImageFilter);
    
        typedef TImage ImageType;
        static const int D=ImageType::ImageDimension;
        typedef typename  ImageType::PixelType PixelType;
        typedef typename  ImageType::Pointer ImagePointerType;
        typedef typename  ImageType::ConstPointer ConstImagePointerType;
        typedef typename ImageType::IndexType IndexType;
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