<commit_before>{
    "h1": {
        "sequences": {"base": "SWITZERLAND/9772556/2013 SIAT2", "recent": 4000, "hamming_distance_threshold": 160},
        "tree_maker": {
            "week": {"garli_num_runs": 128, "garli_stoptime": 604800, "raxml_num_runs": 128, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "12days": {"garli_num_runs": 256, "garli_stoptime": 604800, "raxml_num_runs": 256, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "week64": {"garli_num_runs": 64, "garli_stoptime": 86400, "raxml_num_runs": 64, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day-12h": {"?": "11.5h, raxml: 10h, garli: 1h13m", "garli_num_runs": 8, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 1000, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]}
        }
    },
    "h3": {
        "sequences": {"base": "HAWAII/22/2012 MDCK", "recent": 4000, "hamming_distance_threshold": 160},
        "tree_maker": {
            "week": {"garli_num_runs": 128, "garli_stoptime": 604800, "raxml_num_runs": 128, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "12days": {"garli_num_runs": 256, "garli_stoptime": 604800, "raxml_num_runs": 256, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "week64": {"garli_num_runs": 64, "garli_stoptime": 86400, "raxml_num_runs": 64, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "davidb": {"garli_num_runs": 32, "garli_stoptime": 86400, "raxml_num_runs": 50, "raxml_model_optimization_precision": 0.01, "raxml_kill_rate": 0.5, "machines": ["i20", "i21"]},
            "day-27h": {"?": "just H3 completed in 27h, raxml: 26h, garli: 1h, score 39281 (/syn/eu/ac/results/whocc-tree/2018-0718-H3-1)", "garli_num_runs": 8, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 10, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day": {"?": "11.5h, raxml: 10h22m, 6garli: 1h10m", "garli_num_runs": 8, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 1000, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]}
        }
    },
    "bv": {
        "sequences": {"base": "VICTORIA/830/2013 MDCK2", "recent": 4000, "hamming_distance_threshold": 160},
        "tree_maker": {
            "week": {"garli_num_runs": 128, "garli_stoptime": 604800, "raxml_num_runs": 128, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "12days": {"garli_num_runs": 256, "garli_stoptime": 604800, "raxml_num_runs": 256, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "week64": {"garli_num_runs": 64, "garli_stoptime": 86400, "raxml_num_runs": 64, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day-30h": {"?": "raxml: 28h, garli: 2h", "garli_num_runs": 8, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 10, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]}
        }
    },
    "by": {
        "sequences": {"base": "CHRISTCHURCH/503/2013 MDCK1", "recent": 4000, "hamming_distance_threshold": 160},
        "tree_maker": {
            "week": {"garli_num_runs": 128, "garli_stoptime": 604800, "raxml_num_runs": 128, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "12days": {"garli_num_runs": 256, "garli_stoptime": 604800, "raxml_num_runs": 256, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "week64": {"garli_num_runs": 64, "garli_stoptime": 86400, "raxml_num_runs": 64, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day-15h": {"?": "just BY completed in 14.7h, raxml: 11h, garli: 3h, score: 34916 (/syn/eu/ac/results/whocc-tree/2018-0718-BY-3)", "garli_num_runs": 8, "garli_genthreshfortopoterm": 1000, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 1, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day-14h": {"?": "just BY completed in 14.5h, raxml: 9.5h, garli: 5h, score: 34912 (/syn/eu/ac/results/whocc-tree/2018-0718)", "garli_num_runs": 8, "garli_genthreshfortopoterm": 1000, "garli_stoptime": 7200, "raxml_num_runs": 8, "raxml_model_optimization_precision": 0.1, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day": {"?": "just BY completed in 23h, raxml: 5h, garli: 18h, score 34904 (/syn/eu/ac/results/whocc-tree/2018-0716)", "garli_num_runs": 8, "garli_stoptime": 86400, "raxml_num_runs": 8, "raxml_model_optimization_precision": 0.01, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]}
        }
    },
    "? previous-timing": {
        "week": {
            "2018-0814": "12 days",
            "2018-0906": " 5 days 22 hours",
            "2018-1010": " 6 days  5 hours",
            "2018-1110": " 6 days 17.5 hours",
            "2018-1210": " 6 days"
        }
    }
}
<commit_msg>old sig pages maker config<commit_after>{
    "h1": {
        "sequences": {"base": "SWITZERLAND/9772556/2013 SIAT2", "recent": 4000, "hamming_distance_threshold": 160},
        "tree_maker": {
            "week": {"garli_num_runs": 128, "garli_stoptime": 604800, "raxml_num_runs": 128, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "12days": {"garli_num_runs": 256, "garli_stoptime": 604800, "raxml_num_runs": 256, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "week64": {"garli_num_runs": 64, "garli_stoptime": 86400, "raxml_num_runs": 64, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day-12h": {"?": "11.5h, raxml: 10h, garli: 1h13m", "garli_num_runs": 8, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 1000, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]}
        }
    },
    "h3": {
        "sequences": {"base": "HAWAII/22/2012 MDCK", "recent": 4000, "hamming_distance_threshold": 160},
        "tree_maker": {
            "week": {"garli_num_runs": 128, "garli_stoptime": 604800, "raxml_num_runs": 128, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "12days": {"garli_num_runs": 256, "garli_stoptime": 604800, "raxml_num_runs": 256, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "week64": {"garli_num_runs": 64, "garli_stoptime": 86400, "raxml_num_runs": 64, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "davidb": {"garli_num_runs": 32, "garli_stoptime": 86400, "raxml_num_runs": 50, "raxml_model_optimization_precision": 0.01, "raxml_kill_rate": 0.5, "machines": ["i20", "i21"]},
            "day-27h": {"?": "just H3 completed in 27h, raxml: 26h, garli: 1h, score 39281 (/syn/eu/ac/results/whocc-tree/2018-0718-H3-1)", "garli_num_runs": 8, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 10, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day": {"?": "11.5h, raxml: 10h22m, 6garli: 1h10m", "garli_num_runs": 8, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 1000, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day-all-machines": {"?": "", "garli_num_runs": 100, "garli_stoptime": 1800, "raxml_num_runs": 200, "raxml_model_optimization_precision": 1000, "raxml_kill_rate": 0.5, "machines": ["i18", "i19", "i20", "i21", "o16", "o17"]}
        }
    },
    "bv": {
        "sequences": {"base": "VICTORIA/830/2013 MDCK2", "recent": 4000, "hamming_distance_threshold": 160},
        "tree_maker": {
            "week": {"garli_num_runs": 128, "garli_stoptime": 604800, "raxml_num_runs": 128, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "12days": {"garli_num_runs": 256, "garli_stoptime": 604800, "raxml_num_runs": 256, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "week64": {"garli_num_runs": 64, "garli_stoptime": 86400, "raxml_num_runs": 64, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day-30h": {"?": "raxml: 28h, garli: 2h", "garli_num_runs": 8, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 10, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]}
        }
    },
    "by": {
        "sequences": {"base": "CHRISTCHURCH/503/2013 MDCK1", "recent": 4000, "hamming_distance_threshold": 160},
        "tree_maker": {
            "week": {"garli_num_runs": 128, "garli_stoptime": 604800, "raxml_num_runs": 128, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "12days": {"garli_num_runs": 256, "garli_stoptime": 604800, "raxml_num_runs": 256, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "week64": {"garli_num_runs": 64, "garli_stoptime": 86400, "raxml_num_runs": 64, "raxml_model_optimization_precision": 0.001, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day-15h": {"?": "just BY completed in 14.7h, raxml: 11h, garli: 3h, score: 34916 (/syn/eu/ac/results/whocc-tree/2018-0718-BY-3)", "garli_num_runs": 8, "garli_genthreshfortopoterm": 1000, "garli_stoptime": 3600, "raxml_num_runs": 8, "raxml_model_optimization_precision": 1, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day-14h": {"?": "just BY completed in 14.5h, raxml: 9.5h, garli: 5h, score: 34912 (/syn/eu/ac/results/whocc-tree/2018-0718)", "garli_num_runs": 8, "garli_genthreshfortopoterm": 1000, "garli_stoptime": 7200, "raxml_num_runs": 8, "raxml_model_optimization_precision": 0.1, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]},
            "day": {"?": "just BY completed in 23h, raxml: 5h, garli: 18h, score 34904 (/syn/eu/ac/results/whocc-tree/2018-0716)", "garli_num_runs": 8, "garli_stoptime": 86400, "raxml_num_runs": 8, "raxml_model_optimization_precision": 0.01, "raxml_kill_rate": 0.5, "machines": ["o16", "o17"]}
        }
    },
    "? previous-timing": {
        "week": {
            "2018-0814": "12 days",
            "2018-0906": " 5 days 22 hours",
            "2018-1010": " 6 days  5 hours",
            "2018-1110": " 6 days 17.5 hours",
            "2018-1210": " 6 days"
        }
    }
}

{'fraction_non_alphanumeric': 0.20065430752453653, 'fraction_numerical': 0.11577608142493638, 'mean_word_length': 4.437252964426878, 'pattern_counts': {'":': 368, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 137}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '958609', 'n_tokens_mistral': 5504, 'n_tokens_neox': 4504, 'n_words': 842}