<commit_before>#!/bin/sh

#. ~/src/ensembl-efg/scripts/.efg



#$* would be list of builds if none specifed will use DEFAULT build for the update DB

USER=$1
shift
PASS=$1
shift

if [ ! $PASS ]
then echo "Must provide at least a password argument"; echo "Write run script usage in .efg"; exit; fi


perl -w $EFG_SRC/scripts/update_DB_for_release.pl\
  -species homo_sapiens\
  -port 3306\
  -host ens-genomics1\
  -user $USER\
  -data_version 53_36f\
  -dbname mus_musculus_funcgen_53_37f\
  -check_displayable \
  -pass $PASS\
  -skip_meta_coord\	
  $@

#	-skip_meta_coord\ #put this at the end, as it ignores everything after this opt for some reason
<commit_msg>removed dodgy characters causing options to be missed<commit_after>#!/bin/sh

#. ~/src/ensembl-efg/scripts/.efg



#$* would be list of builds if none specifed will use DEFAULT build for the update DB

USER=$1
shift
PASS=$1
shift

if [ ! $PASS ] || [ ! $USER ]
then echo "Must provide at a user and password argument"; echo "Write run script usage in .efg"; exit; fi


perl -w $EFG_SRC/scripts/update_DB_for_release.pl\
	-species mus_musculus\
	-port 3306\
	-host ens-staging\
	-user $USER\
	-data_version 53_37f\
	-dbname mus_musculus_funcgen_53_37f\
	-check_displayable \
	-pass $PASS\
	-skip_meta_coord\
	$@


{'fraction_non_alphanumeric': 0.10884886452623337, 'fraction_numerical': 0.022709475332811275, 'mean_word_length': 3.4685314685314683, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4423582', 'n_tokens_mistral': 512, 'n_tokens_neox': 476, 'n_words': 147}