<commit_before>language: python
python:
  - "2.7"
cache:
  - pip
  

before_install:
  - git clone https://github.com/Linuxbrew/brew.git ~/.linuxbrew
  - export PATH="$HOME/.linuxbrew/bin:$PATH"
  - export MANPATH="$HOME/.linuxbrew/share/man:$MANPATH"
  - export INFOPATH="$HOME/.linuxbrew/share/info:$INFOPATH"
  - brew tap homebrew/science
  - brew install bwa samtools bcftools blast muscle

install: 
  - pip install Cython
  - pip install -r requirements.txt
  - python setup.py install

script: 
  - py.test <commit_msg>apt packages<commit_after>language: python
python:
  - "2.7"
cache:
  - pip
  

addons:
  apt:
    packages:
      - build-essential
      - curl
      - glibc

before_install:
  - git clone https://github.com/Linuxbrew/brew.git ~/.linuxbrew
  - export PATH="$HOME/.linuxbrew/bin:$PATH"
  - export MANPATH="$HOME/.linuxbrew/share/man:$MANPATH"
  - export INFOPATH="$HOME/.linuxbrew/share/info:$INFOPATH"
  - brew tap homebrew/science
  - brew install bwa samtools tabix blast muscle 

install: 
  - pip install Cython
  - pip install -r requirements.txt
  - python setup.py install


script: 
  - py.test 
{'fraction_non_alphanumeric': 0.12643678160919541, 'fraction_numerical': 0.0035366931918656055, 'mean_word_length': 2.9859154929577465, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '284031', 'n_tokens_mistral': 404, 'n_tokens_neox': 382, 'n_words': 87}