<commit_before>#!/bin/ksh

# GO - Gene Ontology
wget "http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology.1_2.obo"

# SO - Sequence Ontology
wget "http://song.cvs.sourceforge.net/viewvc/*checkout*/song/ontology/so.obo"


# $Id$<commit_msg>Also get OBO files used by Gramene.<commit_after>#!/bin/ksh

# GO    - Gene Ontology
wget -O GO.obo "http://www.geneontology.org/ontology/obo_format_1_2/gene_ontology.1_2.obo"

# SO    - Sequence Ontology
wget -O SO.obo "http://song.cvs.sourceforge.net/viewvc/*checkout*/song/ontology/so.obo"

# ----------------------------------------------------------------------
# Ontologies used in the Gramene project

# PO    - Plant Ontology
wget -O PO.obo "http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/OBO_format/po_anatomy.obo?view=co"

# GRO   - Plant Growth Stage Ontology
wget -O GRO.obo "http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/temporal_gramene.obo?view=co"

# TO    - Plant Traits Ontology
wget -O TO.obo "http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/traits/trait.obo?view=co"

# GR_tax    - Gramene Taxonomy Ontology
wget -O GR_tax.obo "http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/collaborators_ontology/gramene/taxonomy/GR_tax-ontology.obo?view=co"

# EO    - Plant Envionment Ontology
wget -O EO.obo "http://obo.cvs.sourceforge.net/viewvc/obo/obo/ontology/phenotype/environment/environment_ontology.obo"

# $Id$
{'fraction_non_alphanumeric': 0.18090787716955942, 'fraction_numerical': 0.0053404539385847796, 'mean_word_length': 3.4088235294117646, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 2, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3623724', 'n_tokens_mistral': 626, 'n_tokens_neox': 582, 'n_words': 79}