<commit_before>import logging
from itertools import chain
from cPickle import dumps
import re

import bson

import tg

from ming.base import Object
from ming.orm import mapper, session

from allura.lib import utils
from allura.lib import helpers as h
from allura.model.repo import CommitDoc, TreeDoc, TreesDoc, DiffInfoDoc
from allura.model.repo import LastCommitDoc, CommitRunDoc
from allura.model.repo import Commit
from allura.model.index import ArtifactReferenceDoc, ShortlinkDoc

log = logging.getLogger(__name__)

QSIZE=100

def refresh_repo(repo, all_commits=False, notify=True):
    all_commit_ids = commit_ids = list(repo.all_commit_ids())
    new_commit_ids = unknown_commit_ids(commit_ids)
    stats_log = h.log_action(log, 'commit')
    for ci in new_commit_ids:
        stats_log.info(
            '',
            meta=dict(
                module='scm-%s' % repo.repo_id,
                read='0'))
    if not all_commits:
        # Skip commits that are already in the DB
        commit_ids = new_commit_ids
    log.info('Refreshing %d commits on %s', len(commit_ids), repo.full_fs_path)

    # Refresh commits
    seen = set()
    for i, oid in enumerate(commit_ids):
        repo.refresh_commit_info(oid, seen, not all_commits)
        if (i+1) % 100 == 0:
            log.info('Refresh commit info %d: %s', (i+1), oid)

    refresh_commit_repos(all_commit_ids, repo)

    # Refresh child references
    for i, oid in enumerate(commit_ids):
        ci = CommitDoc.m.find(dict(_id=oid), validate=False).next()
        refresh_children(ci)
        if (i+1) % 100 == 0:
            log.info('Refresh child info %d for parents of %s', (i+1), ci._id)

    # Refresh commit runs
    rb = CommitRunBuilder(commit_ids)
    rb.run()
    rb.cleanup()

    # Refresh trees
    cache = {}
    for i, oid in enumerate(commit_ids):
        ci = CommitDoc.m.find(dict(_id=oid), validate=False).next()
        cache = refresh_commit_trees(ci, cache)
        if (i+1) % 100 == 0:
            log.info('Refresh commit trees %d: %s', (i+1), ci._id)

    # Compute diffs
    cache = {}
    for i, oid in enumerate(reversed(commit_ids)):
        ci = CommitDoc.m.find(dict(_id=oid), validate=False).next()
        compute_diffs(repo._id, cache, ci)
        if (i+1) % 100 == 0:
            log.info('Compute diffs %d: %s', (i+1), ci._id)

    log.info('Refresh complete for %s', repo.full_fs_path)

    # Send notifications
    if notify:
        send_notifications(repo, commit_ids)

def refresh_commit_trees(ci, cache):
    '''Refresh the list of trees included withn a commit'''
    if ci.tree_id is None: return
    trees_doc = TreesDoc(dict(
            _id=ci._id,
            tree_ids = list(trees(ci.tree_id, cache))))
    trees_doc.m.save(safe=False)
    new_cache = dict(
        (oid, cache[oid])
        for oid in trees_doc.tree_ids)
    return new_cache

def refresh_commit_repos(all_commit_ids, repo):
    '''Refresh the list of repositories within which a set of commits are
    contained'''
    for oids in utils.chunked_iter(all_commit_ids, QSIZE):
        for ci in CommitDoc.m.find(dict(
                _id={'$in':list(oids)},
                repo_ids={'$ne': repo._id})):
            oid = ci._id
            ci.repo_ids.append(repo._id)
            index_id = 'allura.model.repo.Commit#' + oid
            ref = ArtifactReferenceDoc(dict(
                    _id=index_id,
                    artifact_reference=dict(
                        cls=bson.Binary(dumps(Commit)),
                        project_id=repo.app.config.project_id,
                    app_config_id=repo.app.config._id,
                        artifact_id=oid),
                    references=[]))
            link0 = ShortlinkDoc(dict(
                    _id=bson.ObjectId(),
                    ref_id=index_id,
                    project_id=repo.app.config.project_id,
                    app_config_id=repo.app.config._id,
                    link=repo.shorthand_for_commit(oid)[1:-1],
                    url=repo.url_for_commit(oid)))
            # Always create a link for the full commit ID
            link1 = ShortlinkDoc(dict(
                    _id=bson.ObjectId(),
                    ref_id=index_id,
                    project_id=repo.app.config.project_id,
                    app_config_id=repo.app.config._id,
                    link=oid,
                    url=repo.url_for_commit(oid)))
            ci.m.save(safe=False, validate=False)
            ref.m.save(safe=False, validate=False)
            link0.m.save(safe=False, validate=False)
            link1.m.save(safe=False, validate=False)

def refresh_children(ci):
    '''Refresh the list of children of the given commit'''
    CommitDoc.m.update_partial(
        dict(_id={'$in': ci.parent_ids}),
        {'$addToSet': dict(child_ids=ci._id)},
        multi=True)

class CommitRunBuilder(object):
    '''Class used to build up linear runs of single-parent commits'''

    def __init__(self, commit_ids):
        self.commit_ids = commit_ids
        self.run_index = {} # by commit ID
        self.runs = {}          # by run ID
        self.reasons = {}    # reasons to stop merging runs

    def run(self):
        '''Build up the runs'''
        for oids in utils.chunked_iter(self.commit_ids, QSIZE):
            oids = list(oids)
            for ci in CommitDoc.m.find(dict(_id={'$in':oids})):
                if ci._id in self.run_index: continue
                self.run_index[ci._id] = ci._id
                self.runs[ci._id] = CommitRunDoc(dict(
                        _id=ci._id,
                        parent_commit_ids=ci.parent_ids,
                        commit_ids=[ci._id],
                        commit_times=[ci.authored['date']]))
            self.merge_runs()
        log.info('%d runs', len(self.runs))
        for rid, run in sorted(self.runs.items()):
            log.info('%32s: %r', self.reasons.get(rid, 'none'), run._id)
        for run in self.runs.itervalues():
            run.m.save()
        return self.runs

    def _all_runs(self):
        '''Find all runs containing this builder's commit IDs'''
        runs = {}
        for oids in utils.chunked_iter(self.commit_ids, QSIZE):
            oids = list(oids)
            for run in CommitRunDoc.m.find(dict(commit_ids={'$in': oids})):
                runs[run._id] = run
            for run in CommitRunDoc.m.find(dict(parent_commit_ids={'$in': oids})):
                runs[run._id] = run
        seen_run_ids = set()
        runs = runs.values()
        while runs:
            run = runs.pop()
            if run._id in seen_run_ids: continue
            seen_run_ids.add(run._id)
            yield run
            for run in CommitRunDoc.m.find(
                dict(commit_ids={'$in':run.parent_commit_ids})):
                runs.append(run)

    def cleanup(self):
        '''Delete non-maximal runs and merge any new runs with existing runs'''
        runs = dict(
            (run['commit_ids'][0], run)
            for run in self._all_runs())
        for rid, run in runs.items():
            p_cis = run['parent_commit_ids']
            if len(p_cis) != 1: continue
            parent_run = runs.get(p_cis[0], None)
            if parent_run is None: continue
            run['commit_ids'] += parent_run['commit_ids']
            run['commit_times'] += parent_run['commit_times']
            run['parent_commit_ids'] = parent_run['parent_commit_ids']
            run.m.save()
            runs[p_cis[0]].m.delete()
        for run1 in self._all_runs():
            for run2 in CommitRunDoc.m.find(dict(
                    commit_ids=run1.commit_ids[0])):
                if run1._id == run2._id: continue
                log.info('... delete %r (part of %r)', run2, run1)
                run2.m.delete()

    def merge_runs(self):
        '''Find partial runs that may be merged and merge them'''
        while True:
            for run_id, run in self.runs.iteritems():
                if len(run.parent_commit_ids) != 1:
                    self.reasons[run_id] = '%d parents' % len(run.parent_commit_ids)
                    continue
                p_oid = run.parent_commit_ids[0]
                p_run_id = self.run_index.get(p_oid)
                if p_run_id is None:
                    self.reasons[run_id] = 'parent commit not found'
                    continue
                p_run = self.runs.get(p_run_id)
                if p_run is None:
                    self.reasons[run_id] = 'parent run not found'
                    continue
                if p_run.commit_ids[0] != p_oid:
                    self.reasons[run_id] = 'parent does not start with parent commit'
                    continue
                run.commit_ids += p_run.commit_ids
                run.commit_times += p_run.commit_times
                run.parent_commit_ids = p_run.parent_commit_ids
                for oid in p_run.commit_ids:
                    self.run_index[oid] = run_id
                break
            else:
                break
            del self.runs[p_run_id]

def trees(id, cache):
    '''Recursively generate the list of trees contained within a given tree ID'''
    yield id
    entries = cache.get(id, None)
    if entries is None:
        t = TreeDoc.m.get(_id=id)
        entries = [ o.id for o in t.tree_ids ]
        cache[id] = entries
    for i in entries:
        for x in trees(i, cache):
            yield x

def unknown_commit_ids(all_commit_ids):
    '''filter out all commit ids that have already been cached'''
    result = []
    for chunk in utils.chunked_iter(all_commit_ids, QSIZE):
        chunk = list(chunk)
        q = CommitDoc.m.find(dict(_id={'$in':chunk}))
        known_commit_ids = set(ci._id for ci in q)
        result += [ oid for oid in chunk if oid not in known_commit_ids ]
    return result

def compute_diffs(repo_id, tree_cache, rhs_ci):
    '''compute simple differences between a commit and its first parent'''
    if rhs_ci.tree_id is None: return
    def _walk_tree(tree, tree_index):
        for x in tree.blob_ids: yield x.id
        for x in tree.other_ids: yield x.id
        for x in tree.tree_ids:
            yield x.id
            for xx in _walk_tree(tree_index[x.id], tree_index):
                yield xx

    rhs_tree_ids = TreesDoc.m.get(_id=rhs_ci._id).tree_ids
    if rhs_ci.parent_ids:
        lhs_ci = CommitDoc.m.get(_id=rhs_ci.parent_ids[0])
    else:
        lhs_ci = None
    if lhs_ci is not None:
        lhs_tree_ids = TreesDoc.m.get(_id=lhs_ci._id).tree_ids
    else:
        lhs_tree_ids = []
    new_tree_ids = [
        tid for tid in chain(lhs_tree_ids, rhs_tree_ids)
        if tid not in tree_cache ]
    tree_index = dict(
        (t._id, t) for t in TreeDoc.m.find(dict(_id={'$in': new_tree_ids}),validate=False))
    tree_index.update(tree_cache)
    rhs_tree_ids_set = set(rhs_tree_ids)
    tree_cache.clear()
    tree_cache.update(
        (id, t) for id,t in tree_index.iteritems() if id in rhs_tree_ids_set)
    rhs_tree = tree_index[rhs_ci.tree_id]
    if lhs_ci is None:
        lhs_tree = Object(_id=None, tree_ids=[], blob_ids=[], other_ids=[])
    else:
        lhs_tree = tree_index[lhs_ci.tree_id]
    differences = []
    commit_info = get_commit_info(rhs_ci)
    for name, lhs_id, rhs_id in _diff_trees(lhs_tree, rhs_tree, tree_index):
        differences.append(
            dict(name=name, lhs_id=lhs_id, rhs_id=rhs_id))
        # Set last commit info
        if rhs_id is not None:
            set_last_commit(repo_id, rhs_id, commit_info)
        rhs_tree = tree_index.get(rhs_id, None)
        if rhs_tree is not None:
            for oid in _walk_tree(rhs_tree, tree_index):
                set_last_commit(repo_id, oid, commit_info)
    # Set last commit data for trees without it in the RHS
    if True:
        last_commit_collection = LastCommitDoc.m.session.db[
            LastCommitDoc.m.collection_name]
        last_commits = set(
            d['object_id']
            for d in last_commit_collection.find(
                dict(object_id={'$in': rhs_tree_ids},
                     _id=re.compile("^{}:".format(repo_id))),
                { 'object_id': 1, '_id': 0 }))
        for tree_id in rhs_tree_ids:
            if tree_id not in last_commits:
                set_last_commit(repo_id, tree_id, commit_info)
   # Build the diffinfo
    di = DiffInfoDoc(dict(
            _id=rhs_ci._id,
            differences=differences))
    di.m.save()
    return tree_cache

def send_notifications(repo, commit_ids):
    '''Create appropriate notification and feed objects for a refresh'''
    from allura.model import Feed, Notification
    commit_msgs = []
    base_url = tg.config.get('base_url', 'sourceforge.net')
    for oids in utils.chunked_iter(commit_ids, QSIZE):
        chunk = list(oids)
        index = dict(
            (doc._id, doc)
            for doc in Commit.query.find(dict(_id={'$in':chunk})))
        for oid in chunk:
            ci = index[oid]
            href = repo.url_for_commit(oid)
            summary = _summarize(ci.message)
            Feed.post(
                repo, title='New commit',
                description='%s<br><a href="%s">View Changes</a>' % (
                    summary, href),
                author_link=ci.author_url,
                author_name=ci.authored.name)
            branches = repo.symbolics_for_commit(ci)[0]
            commit_msgs.append('%s: %s by %s %s%s' % (
                    ",".join(b for b in branches),
                    summary, ci.authored.name, base_url, ci.url()))
    if commit_msgs:
        if len(commit_msgs) > 1:
            subject = '%d new commits to %s %s' % (
                len(commit_msgs), repo.app.project.name, repo.app.config.options.mount_label)
            text='\n\n'.join(commit_msgs)
        else:
            subject = '%s committed to %s %s: %s' % (
                ci.authored.name,
                repo.app.project.name,
                repo.app.config.options.mount_label,
                summary)
            branches = repo.symbolics_for_commit(ci)[0]
            text = "%s: %s %s%s" % (",".join(b for b in branches),
                               ci.message,
                               base_url, ci.url())

        Notification.post(
            artifact=repo,
            topic='metadata',
            subject=subject,
            text=text)

def _summarize(message):
    if not message: return ''
    summary = []
    for line in message.splitlines():
        line = line.rstrip()
        if line: summary.append(line)
        else: break
    return ' '.join(summary)

def _diff_trees(lhs, rhs, index, *path):
    def _fq(name):
        return '/'.join(reversed(
                (name,) + path))
    # Diff the trees
    rhs_tree_ids = dict(
        (o.name, o.id)
        for o in rhs.tree_ids)
    for o in lhs.tree_ids:
        rhs_id = rhs_tree_ids.pop(o.name, None)
        if rhs_id == o.id:
            continue # no change
        elif rhs_id is None:
            yield (_fq(o.name), o.id, None)
        else:
            for difference in _diff_trees(
                index[o.id], index[rhs_id], index,
                o.name, *path):
                yield difference
    for name, id in rhs_tree_ids.items():
        yield (_fq(name), None, id)
    # DIff the blobs
    rhs_blob_ids = dict(
        (o.name, o.id)
        for o in rhs.blob_ids)
    for o in lhs.blob_ids:
        rhs_id = rhs_blob_ids.pop(o.name, None)
        if rhs_id == o.id:
            continue # no change
        elif rhs_id is None:
            yield (_fq(o.name), o.id, None)
        else:
            yield (_fq(o.name), o.id, rhs_id)
    for name, id in rhs_blob_ids.items():
        yield (_fq(name), None, id)

def get_commit_info(commit):
    if not isinstance(commit, Commit):
        commit = mapper(Commit).create(commit, dict(instrument=False))
    session(commit).expunge(commit)
    return dict(
        id=commit._id,
        author=commit.authored.name,
        author_email=commit.authored.email,
        date=commit.authored.date,
        author_url=commit.author_url,
        shortlink=commit.shorthand_id(),
        summary=commit.summary
        )

def set_last_commit(repo_id, oid, commit_info):
    lc = LastCommitDoc(dict(
            _id='%s:%s' % (repo_id, oid),
            object_id=oid,
            commit_info=commit_info))
    lc.m.save(safe=False, upsert=True)
    return lc
<commit_msg>[#4523] Make sure LastCommitDocs get set properly for forks.<commit_after>import logging
from itertools import chain
from cPickle import dumps
import re

import bson

import tg

from ming.base import Object
from ming.orm import mapper, session

from allura.lib import utils
from allura.lib import helpers as h
from allura.model.repo import CommitDoc, TreeDoc, TreesDoc, DiffInfoDoc
from allura.model.repo import LastCommitDoc, CommitRunDoc
from allura.model.repo import Commit
from allura.model.index import ArtifactReferenceDoc, ShortlinkDoc

log = logging.getLogger(__name__)

QSIZE=100

def refresh_repo(repo, all_commits=False, notify=True):
    all_commit_ids = commit_ids = list(repo.all_commit_ids())
    new_commit_ids = unknown_commit_ids(commit_ids)
    stats_log = h.log_action(log, 'commit')
    for ci in new_commit_ids:
        stats_log.info(
            '',
            meta=dict(
                module='scm-%s' % repo.repo_id,
                read='0'))
    if not all_commits:
        # Skip commits that are already in the DB
        commit_ids = new_commit_ids
    log.info('Refreshing %d commits on %s', len(commit_ids), repo.full_fs_path)

    # Refresh commits
    seen = set()
    for i, oid in enumerate(commit_ids):
        repo.refresh_commit_info(oid, seen, not all_commits)
        if (i+1) % 100 == 0:
            log.info('Refresh commit info %d: %s', (i+1), oid)

    refresh_commit_repos(all_commit_ids, repo)

    # Refresh child references
    for i, oid in enumerate(commit_ids):
        ci = CommitDoc.m.find(dict(_id=oid), validate=False).next()
        refresh_children(ci)
        if (i+1) % 100 == 0:
            log.info('Refresh child info %d for parents of %s', (i+1), ci._id)

    # Refresh commit runs
    rb = CommitRunBuilder(commit_ids)
    rb.run()
    rb.cleanup()

    # Refresh trees
    cache = {}
    for i, oid in enumerate(commit_ids):
        ci = CommitDoc.m.find(dict(_id=oid), validate=False).next()
        cache = refresh_commit_trees(ci, cache)
        if (i+1) % 100 == 0:
            log.info('Refresh commit trees %d: %s', (i+1), ci._id)

    # Compute diffs
    cache = {}
    # Have to compute_diffs() for all commits to ensure that LastCommitDocs
    # are set properly for forked repos. For SVN, compute_diffs() will return
    # immediately, so no real work is done.
    for i, oid in enumerate(reversed(all_commit_ids)):
        ci = CommitDoc.m.find(dict(_id=oid), validate=False).next()
        compute_diffs(repo._id, cache, ci)
        if (i+1) % 100 == 0:
            log.info('Compute diffs %d: %s', (i+1), ci._id)

    log.info('Refresh complete for %s', repo.full_fs_path)

    # Send notifications
    if notify:
        send_notifications(repo, commit_ids)

def refresh_commit_trees(ci, cache):
    '''Refresh the list of trees included withn a commit'''
    if ci.tree_id is None: return
    trees_doc = TreesDoc(dict(
            _id=ci._id,
            tree_ids = list(trees(ci.tree_id, cache))))
    trees_doc.m.save(safe=False)
    new_cache = dict(
        (oid, cache[oid])
        for oid in trees_doc.tree_ids)
    return new_cache

def refresh_commit_repos(all_commit_ids, repo):
    '''Refresh the list of repositories within which a set of commits are
    contained'''
    for oids in utils.chunked_iter(all_commit_ids, QSIZE):
        for ci in CommitDoc.m.find(dict(
                _id={'$in':list(oids)},
                repo_ids={'$ne': repo._id})):
            oid = ci._id
            ci.repo_ids.append(repo._id)
            index_id = 'allura.model.repo.Commit#' + oid
            ref = ArtifactReferenceDoc(dict(
                    _id=index_id,
                    artifact_reference=dict(
                        cls=bson.Binary(dumps(Commit)),
                        project_id=repo.app.config.project_id,
                    app_config_id=repo.app.config._id,
                        artifact_id=oid),
                    references=[]))
            link0 = ShortlinkDoc(dict(
                    _id=bson.ObjectId(),
                    ref_id=index_id,
                    project_id=repo.app.config.project_id,
                    app_config_id=repo.app.config._id,
                    link=repo.shorthand_for_commit(oid)[1:-1],
                    url=repo.url_for_commit(oid)))
            # Always create a link for the full commit ID
            link1 = ShortlinkDoc(dict(
                    _id=bson.ObjectId(),
                    ref_id=index_id,
                    project_id=repo.app.config.project_id,
                    app_config_id=repo.app.config._id,
                    link=oid,
                    url=repo.url_for_commit(oid)))
            ci.m.save(safe=False, validate=False)
            ref.m.save(safe=False, validate=False)
            link0.m.save(safe=False, validate=False)
            link1.m.save(safe=False, validate=False)

def refresh_children(ci):
    '''Refresh the list of children of the given commit'''
    CommitDoc.m.update_partial(
        dict(_id={'$in': ci.parent_ids}),
        {'$addToSet': dict(child_ids=ci._id)},
        multi=True)

class CommitRunBuilder(object):
    '''Class used to build up linear runs of single-parent commits'''

    def __init__(self, commit_ids):
        self.commit_ids = commit_ids
        self.run_index = {} # by commit ID
        self.runs = {}          # by run ID
        self.reasons = {}    # reasons to stop merging runs

    def run(self):
        '''Build up the runs'''
        for oids in utils.chunked_iter(self.commit_ids, QSIZE):
            oids = list(oids)
            for ci in CommitDoc.m.find(dict(_id={'$in':oids})):
                if ci._id in self.run_index: continue
                self.run_index[ci._id] = ci._id
                self.runs[ci._id] = CommitRunDoc(dict(
                        _id=ci._id,
                        parent_commit_ids=ci.parent_ids,
                        commit_ids=[ci._id],
                        commit_times=[ci.authored['date']]))
            self.merge_runs()
        log.info('%d runs', len(self.runs))
        for rid, run in sorted(self.runs.items()):
            log.info('%32s: %r', self.reasons.get(rid, 'none'), run._id)
        for run in self.runs.itervalues():
            run.m.save()
        return self.runs

    def _all_runs(self):
        '''Find all runs containing this builder's commit IDs'''
        runs = {}
        for oids in utils.chunked_iter(self.commit_ids, QSIZE):
            oids = list(oids)
            for run in CommitRunDoc.m.find(dict(commit_ids={'$in': oids})):
                runs[run._id] = run
            for run in CommitRunDoc.m.find(dict(parent_commit_ids={'$in': oids})):
                runs[run._id] = run
        seen_run_ids = set()
        runs = runs.values()
        while runs:
            run = runs.pop()
            if run._id in seen_run_ids: continue
            seen_run_ids.add(run._id)
            yield run
            for run in CommitRunDoc.m.find(
                dict(commit_ids={'$in':run.parent_commit_ids})):
                runs.append(run)

    def cleanup(self):
        '''Delete non-maximal runs and merge any new runs with existing runs'''
        runs = dict(
            (run['commit_ids'][0], run)
            for run in self._all_runs())
        for rid, run in runs.items():
            p_cis = run['parent_commit_ids']
            if len(p_cis) != 1: continue
            parent_run = runs.get(p_cis[0], None)
            if parent_run is None: continue
            run['commit_ids'] += parent_run['commit_ids']
            run['commit_times'] += parent_run['commit_times']
            run['parent_commit_ids'] = parent_run['parent_commit_ids']
            run.m.save()
            runs[p_cis[0]].m.delete()
        for run1 in self._all_runs():
            for run2 in CommitRunDoc.m.find(dict(
                    commit_ids=run1.commit_ids[0])):
                if run1._id == run2._id: continue
                log.info('... delete %r (part of %r)', run2, run1)
                run2.m.delete()

    def merge_runs(self):
        '''Find partial runs that may be merged and merge them'''
        while True:
            for run_id, run in self.runs.iteritems():
                if len(run.parent_commit_ids) != 1:
                    self.reasons[run_id] = '%d parents' % len(run.parent_commit_ids)
                    continue
                p_oid = run.parent_commit_ids[0]
                p_run_id = self.run_index.get(p_oid)
                if p_run_id is None:
                    self.reasons[run_id] = 'parent commit not found'
                    continue
                p_run = self.runs.get(p_run_id)
                if p_run is None:
                    self.reasons[run_id] = 'parent run not found'
                    continue
                if p_run.commit_ids[0] != p_oid:
                    self.reasons[run_id] = 'parent does not start with parent commit'
                    continue
                run.commit_ids += p_run.commit_ids
                run.commit_times += p_run.commit_times
                run.parent_commit_ids = p_run.parent_commit_ids
                for oid in p_run.commit_ids:
                    self.run_index[oid] = run_id
                break
            else:
                break
            del self.runs[p_run_id]

def trees(id, cache):
    '''Recursively generate the list of trees contained within a given tree ID'''
    yield id
    entries = cache.get(id, None)
    if entries is None:
        t = TreeDoc.m.get(_id=id)
        entries = [ o.id for o in t.tree_ids ]
        cache[id] = entries
    for i in entries:
        for x in trees(i, cache):
            yield x

def unknown_commit_ids(all_commit_ids):
    '''filter out all commit ids that have already been cached'''
    result = []
    for chunk in utils.chunked_iter(all_commit_ids, QSIZE):
        chunk = list(chunk)
        q = CommitDoc.m.find(dict(_id={'$in':chunk}))
        known_commit_ids = set(ci._id for ci in q)
        result += [ oid for oid in chunk if oid not in known_commit_ids ]
    return result

def compute_diffs(repo_id, tree_cache, rhs_ci):
    '''compute simple differences between a commit and its first parent'''
    if rhs_ci.tree_id is None: return
    def _walk_tree(tree, tree_index):
        for x in tree.blob_ids: yield x.id
        for x in tree.other_ids: yield x.id
        for x in tree.tree_ids:
            yield x.id
            for xx in _walk_tree(tree_index[x.id], tree_index):
                yield xx

    rhs_tree_ids = TreesDoc.m.get(_id=rhs_ci._id).tree_ids
    if rhs_ci.parent_ids:
        lhs_ci = CommitDoc.m.get(_id=rhs_ci.parent_ids[0])
    else:
        lhs_ci = None
    if lhs_ci is not None:
        lhs_tree_ids = TreesDoc.m.get(_id=lhs_ci._id).tree_ids
    else:
        lhs_tree_ids = []
    new_tree_ids = [
        tid for tid in chain(lhs_tree_ids, rhs_tree_ids)
        if tid not in tree_cache ]
    tree_index = dict(
        (t._id, t) for t in TreeDoc.m.find(dict(_id={'$in': new_tree_ids}),validate=False))
    tree_index.update(tree_cache)
    rhs_tree_ids_set = set(rhs_tree_ids)
    tree_cache.clear()
    tree_cache.update(
        (id, t) for id,t in tree_index.iteritems() if id in rhs_tree_ids_set)
    rhs_tree = tree_index[rhs_ci.tree_id]
    if lhs_ci is None:
        lhs_tree = Object(_id=None, tree_ids=[], blob_ids=[], other_ids=[])
    else:
        lhs_tree = tree_index[lhs_ci.tree_id]
    differences = []
    commit_info = get_commit_info(rhs_ci)
    for name, lhs_id, rhs_id in _diff_trees(lhs_tree, rhs_tree, tree_index):
        differences.append(
            dict(name=name, lhs_id=lhs_id, rhs_id=rhs_id))
        # Set last commit info
        if rhs_id is not None:
            set_last_commit(repo_id, rhs_id, commit_info)
        rhs_tree = tree_index.get(rhs_id, None)
        if rhs_tree is not None:
            for oid in _walk_tree(rhs_tree, tree_index):
                set_last_commit(repo_id, oid, commit_info)
    # Set last commit data for trees without it in the RHS
    if True:
        last_commit_collection = LastCommitDoc.m.session.db[
            LastCommitDoc.m.collection_name]
        last_commits = set(
            d['object_id']
            for d in last_commit_collection.find(
                dict(object_id={'$in': rhs_tree_ids},
                     _id=re.compile("^{}:".format(repo_id))),
                { 'object_id': 1, '_id': 0 }))
        for tree_id in rhs_tree_ids:
            if tree_id not in last_commits:
                set_last_commit(repo_id, tree_id, commit_info)
   # Build the diffinfo
    di = DiffInfoDoc(dict(
            _id=rhs_ci._id,
            differences=differences))
    di.m.save()
    return tree_cache

def send_notifications(repo, commit_ids):
    '''Create appropriate notification and feed objects for a refresh'''
    from allura.model import Feed, Notification
    commit_msgs = []
    base_url = tg.config.get('base_url', 'sourceforge.net')
    for oids in utils.chunked_iter(commit_ids, QSIZE):
        chunk = list(oids)
        index = dict(
            (doc._id, doc)
            for doc in Commit.query.find(dict(_id={'$in':chunk})))
        for oid in chunk:
            ci = index[oid]
            href = repo.url_for_commit(oid)
            summary = _summarize(ci.message)
            Feed.post(
                repo, title='New commit',
                description='%s<br><a href="%s">View Changes</a>' % (
                    summary, href),
                author_link=ci.author_url,
                author_name=ci.authored.name)
            branches = repo.symbolics_for_commit(ci)[0]
            commit_msgs.append('%s: %s by %s %s%s' % (
                    ",".join(b for b in branches),
                    summary, ci.authored.name, base_url, ci.url()))
    if commit_msgs:
        if len(commit_msgs) > 1:
            subject = '%d new commits to %s %s' % (
                len(commit_msgs), repo.app.project.name, repo.app.config.options.mount_label)
            text='\n\n'.join(commit_msgs)
        else:
            subject = '%s committed to %s %s: %s' % (
                ci.authored.name,
                repo.app.project.name,
                repo.app.config.options.mount_label,
                summary)
            branches = repo.symbolics_for_commit(ci)[0]
            text = "%s: %s %s%s" % (",".join(b for b in branches),
                               ci.message,
                               base_url, ci.url())

        Notification.post(
            artifact=repo,
            topic='metadata',
            subject=subject,
            text=text)

def _summarize(message):
    if not message: return ''
    summary = []
    for line in message.splitlines():
        line = line.rstrip()
        if line: summary.append(line)
        else: break
    return ' '.join(summary)

def _diff_trees(lhs, rhs, index, *path):
    def _fq(name):
        return '/'.join(reversed(
                (name,) + path))
    # Diff the trees
    rhs_tree_ids = dict(
        (o.name, o.id)
        for o in rhs.tree_ids)
    for o in lhs.tree_ids:
        rhs_id = rhs_tree_ids.pop(o.name, None)
        if rhs_id == o.id:
            continue # no change
        elif rhs_id is None:
            yield (_fq(o.name), o.id, None)
        else:
            for difference in _diff_trees(
                index[o.id], index[rhs_id], index,
                o.name, *path):
                yield difference
    for name, id in rhs_tree_ids.items():
        yield (_fq(name), None, id)
    # DIff the blobs
    rhs_blob_ids = dict(
        (o.name, o.id)
        for o in rhs.blob_ids)
    for o in lhs.blob_ids:
        rhs_id = rhs_blob_ids.pop(o.name, None)
        if rhs_id == o.id:
            continue # no change
        elif rhs_id is None:
            yield (_fq(o.name), o.id, None)
        else:
            yield (_fq(o.name), o.id, rhs_id)
    for name, id in rhs_blob_ids.items():
        yield (_fq(name), None, id)

def get_commit_info(commit):
    if not isinstance(commit, Commit):
        commit = mapper(Commit).create(commit, dict(instrument=False))
    session(commit).expunge(commit)
    return dict(
        id=commit._id,
        author=commit.authored.name,
        author_email=commit.authored.email,
        date=commit.authored.date,
        author_url=commit.author_url,
        shortlink=commit.shorthand_id(),
        summary=commit.summary
        )

def set_last_commit(repo_id, oid, commit_info):
    lc = LastCommitDoc(dict(
            _id='%s:%s' % (repo_id, oid),
            object_id=oid,
            commit_info=commit_info))
    lc.m.save(safe=False, upsert=True)
    return lc

{'fraction_non_alphanumeric': 0.10961346671099156, 'fraction_numerical': 0.003626582852307413, 'mean_word_length': 1.9520920688732268, 'pattern_counts': {'":': 0, '<': 9, '<?xml version=': 0, '>': 11, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2472828', 'n_tokens_mistral': 10671, 'n_tokens_neox': 10419, 'n_words': 2464}