<commit_before>class RaxmlNg < Formula
  desc "RAxML Next Generation: faster, easier-to-use and more flexible"
  homepage "https://sco.h-its.org/exelixis/web/software/raxml/"
  url "https://github.com/amkozlov/raxml-ng.git",
    tag:      "1.0.0",
    revision: "308ff5cc88d0785fce1308d5953d7b6a644e8cf8"
  license "AGPL-3.0-or-later"

  bottle do
    cellar :any
    sha256 "0902dc74193390a5769d57e566c686a0dfbe0336d44273be76cc38103551b5aa" => :catalina
    sha256 "08286840feb5b0ef4a8f13717df0d62980e10fcf07c102ffd2722433087ed5b9" => :mojave
    sha256 "358ce270c0607ad2985a02ab4a26a0d87439bf134611e0e6ed82251a50bef1d8" => :high_sierra
  end

  depends_on "autoconf" => :build
  depends_on "automake" => :build
  depends_on "cmake" => :build
  depends_on "libtool" => :build
  depends_on "gmp"
  depends_on "open-mpi"

  uses_from_macos "bison" => :build
  uses_from_macos "flex" => :build

  resource "example" do
    url "https://sco.h-its.org/exelixis/resource/download/hands-on/dna.phy"
    sha256 "c2adc42823313831b97af76b3b1503b84573f10d9d0d563be5815cde0effe0c2"
  end

  def install
    args = std_cmake_args + ["-DUSE_GMP=ON"]
    mkdir "build" do
      system "cmake", "..", *args<commit_msg>raxml-ng: update 1.0.0 bottle.<commit_after>class RaxmlNg < Formula
  desc "RAxML Next Generation: faster, easier-to-use and more flexible"
  homepage "https://sco.h-its.org/exelixis/web/software/raxml/"
  url "https://github.com/amkozlov/raxml-ng.git",
    tag:      "1.0.0",
    revision: "308ff5cc88d0785fce1308d5953d7b6a644e8cf8"
  license "AGPL-3.0-or-later"

  bottle do
    cellar :any
    sha256 "0902dc74193390a5769d57e566c686a0dfbe0336d44273be76cc38103551b5aa" => :catalina
    sha256 "08286840feb5b0ef4a8f13717df0d62980e10fcf07c102ffd2722433087ed5b9" => :mojave
    sha256 "358ce270c0607ad2985a02ab4a26a0d87439bf134611e0e6ed82251a50bef1d8" => :high_sierra
    sha256 "8f3267931265c93da4ca1e582aa08196b7400771f81ba222c563f6e69d087433" => :x86_64_linux
  end

  depends_on "autoconf" => :build
  depends_on "automake" => :build
  depends_on "cmake" => :build
  depends_on "libtool" => :build
  depends_on "gmp"
  depends_on "open-mpi"

  uses_from_macos "bison" => :build
  uses_from_macos "flex" => :build

  resource "example" do
    url "https://sco.h-its.org/exelixis/resource/download/hands-on/dna.phy"
    sha256 "c2adc42823313831b97af76b3b1503b84573f10d9d0d563be5815cde0effe0c2"
  end

  def install
    args = std_cmake_args + ["-DUSE_GMP=ON"]
    mkdir "build" do
      system "cmake", "..", *args
{'fraction_non_alphanumeric': 0.11358220810166798, 'fraction_numerical': 0.19023034154090548, 'mean_word_length': 4.524122807017544, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 22, 'https://': 6, 'lorem ipsum': 0, 'www.': 0, 'xml': 7}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3580725', 'n_tokens_mistral': 1377, 'n_tokens_neox': 1138, 'n_words': 159}