<commit_before># PeP (Enzymatic) Numerical P System simulator written in Python 3 (with branch for Python 2).

The structure and functioning of this simulator is described in:

<NAME>, <NAME> - Design, development, and evaluation of a numerical P systems simulator, under review, 2017

## Command line usage
python3 pep.py INPUT_FILE_NAME.pep [OPTIONS]

where OPTIONS can be:

* `--step`: require the user to press enter after befor running the next simulation step;
* `-n NUMBER`: stop the simulation after `n` simulation steps;
* `--csv`: write a .csv document at the end of the simulation that contains the values of each variable at each simulation step;
* `--debug`: increase verbosity by showing DEBUG messages are required;
* `--error`: reduce verbosity by showing only ERROR messages

If [colorlog](https://pypi.python.org/pypi/colorlog) is installed, then messages will be coloured according to the level of importance.

# Authors
<NAME>, <NAME>,

Department of Automatic Control And Systems Engineering,

Politehnica University of Bucharest<commit_msg>small corrections to the readme file<commit_after># PeP (Enzymatic) Numerical P System simulator written in Python 3 (with branch for Python 2).

## Command line usage
python3 pep.py INPUT_FILE_NAME.pep [OPTIONS]

where OPTIONS can be:

* `--step`: require the user to press enter after befor running the next simulation step;
* `-n NUMBER`: stop the simulation after `n` simulation steps;
* `--csv`: write a .csv document at the end of the simulation that contains the values of each variable at each simulation step;
* `--debug`: increase verbosity by showing DEBUG messages
* `--error`: reduce verbosity by showing only ERROR messages

If [colorlog](https://pypi.python.org/pypi/colorlog) is installed, then messages will be coloured according to the level of importance.

# Authors
<NAME>, <NAME>,

Department of Automatic Control And Systems Engineering,

Politehnica University of Bucharest
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