<commit_before>/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    itkMaskConnectedComponentImageFilterTest.cxx
  Language:  C++
  Date:      $Date$
  Version:   $Revision$

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#if defined(_MSC_VER)
#pragma warning ( disable : 4786 )
#endif
#include "itkConnectedComponentImageFilter.h"
#include "itkRelabelComponentImageFilter.h"
#include "itkBinaryThresholdImageFilter.h"
#include "itkImageFileReader.h"
#include "itkVTKImageIO.h"
#include "itkImageFileWriter.h"
#include "itkImageRegionIterator.h"
#include "itkFilterWatcher.h"
#include "itkImageRegionIterator.h"
#include "itkMersenneTwisterRandomVariateGenerator.h"

int itkMaskConnectedComponentImageFilterTest(int argc, char* argv[] )
{
  if( argc < 5 )
    {
    std::cerr << "Missing Parameters " << std::endl;
    std::cerr << "Usage: " << argv[0];
    std::cerr << " inputImage  outputImage threshold_low threshold_hi [fully_connected] [minimum_object_size]" << std::endl;
    return 1;
    }

  typedef   unsigned short  InternalPixelType;
  typedef   bool  MaskPixelType;
  const     unsigned int    Dimension = 2;
  
  typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
  typedef itk::Image< MaskPixelType, Dimension >  MaskImageType;
  typedef itk::Image<unsigned short,Dimension> OutputImageType;

  typedef itk::RGBPixel<unsigned char>   RGBPixelType;
  typedef itk::Image<RGBPixelType, Dimension>    RGBImageType;

  typedef itk::ImageFileReader< InternalImageType > ReaderType;
  typedef itk::ImageFileWriter<  RGBImageType  > WriterType;

  
  typedef itk::BinaryThresholdImageFilter< InternalImageType, InternalImageType > ThresholdFilterType;
  typedef itk::ConnectedComponentImageFilter< InternalImageType, OutputImageType, MaskImageType > FilterType;
  typedef itk::RelabelComponentImageFilter< OutputImageType, OutputImageType > RelabelType;

  
  ReaderType::Pointer reader = ReaderType::New();
  WriterType::Pointer writer = WriterType::New();
  ThresholdFilterType::Pointer threshold = ThresholdFilterType::New();
  FilterType::Pointer filter = FilterType::New();
  RelabelType::Pointer relabel = RelabelType::New();
  
  FilterWatcher watcher(filter);
  watcher.QuietOn();

  reader->SetFileName( argv[1] );

  InternalPixelType threshold_low, threshold_hi;
  threshold_low = atoi( argv[3]);
  threshold_hi = atoi( argv[4]);

  threshold->SetInput (reader->GetOutput());
  threshold->SetInsideValue(itk::NumericTraits<InternalPixelType>::One);
  threshold->SetOutsideValue(itk::NumericTraits<InternalPixelType>::Zero);
  threshold->SetLowerThreshold(threshold_low);
  threshold->SetUpperThreshold(threshold_hi);
  threshold->Update();
  
  // create a mask containing the upper left hand corner and
  // a chunk out of the middle
  MaskImageType::Pointer mask = MaskImageType::New();
  mask->SetRegions(threshold->GetOutput()->GetLargestPossibleRegion());
  mask->CopyInformation(threshold->GetOutput());
  mask->Allocate();
  mask->FillBuffer(itk::NumericTraits<MaskPixelType>::Zero);

  MaskImageType::RegionType maskRegion = mask->GetLargestPossibleRegion();
  MaskImageType::SizeType maskSize = maskRegion.GetSize();

  MaskImageType::RegionType region;
  MaskImageType::SizeType size;
  MaskImageType::IndexType index;
  
  // use upper left corner
  index.Fill(0);
  for (unisgned int i=0; i<MaskImageType::ImageDimension; i++)
    {
    size[i] = static_cast<unsigned long> (0.375 * maskSize[i]);
    }
  region.SetIndex (index);
  region.SetSize (size);

  itk::ImageRegionIterator<MaskImageType> mit(mask,region);
  while (!mit.IsAtEnd())<commit_msg>BUG: type.<commit_after>/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    itkMaskConnectedComponentImageFilterTest.cxx
  Language:  C++
  Date:      $Date$
  Version:   $Revision$

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/
#if defined(_MSC_VER)
#pragma warning ( disable : 4786 )
#endif
#include "itkConnectedComponentImageFilter.h"
#include "itkRelabelComponentImageFilter.h"
#include "itkBinaryThresholdImageFilter.h"
#include "itkImageFileReader.h"
#include "itkVTKImageIO.h"
#include "itkImageFileWriter.h"
#include "itkImageRegionIterator.h"
#include "itkFilterWatcher.h"
#include "itkImageRegionIterator.h"
#include "itkMersenneTwisterRandomVariateGenerator.h"

int itkMaskConnectedComponentImageFilterTest(int argc, char* argv[] )
{
  if( argc < 5 )
    {
    std::cerr << "Missing Parameters " << std::endl;
    std::cerr << "Usage: " << argv[0];
    std::cerr << " inputImage  outputImage threshold_low threshold_hi [fully_connected] [minimum_object_size]" << std::endl;
    return 1;
    }

  typedef   unsigned short  InternalPixelType;
  typedef   bool  MaskPixelType;
  const     unsigned int    Dimension = 2;
  
  typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
  typedef itk::Image< MaskPixelType, Dimension >  MaskImageType;
  typedef itk::Image<unsigned short,Dimension> OutputImageType;

  typedef itk::RGBPixel<unsigned char>   RGBPixelType;
  typedef itk::Image<RGBPixelType, Dimension>    RGBImageType;

  typedef itk::ImageFileReader< InternalImageType > ReaderType;
  typedef itk::ImageFileWriter<  RGBImageType  > WriterType;

  
  typedef itk::BinaryThresholdImageFilter< InternalImageType, InternalImageType > ThresholdFilterType;
  typedef itk::ConnectedComponentImageFilter< InternalImageType, OutputImageType, MaskImageType > FilterType;
  typedef itk::RelabelComponentImageFilter< OutputImageType, OutputImageType > RelabelType;

  
  ReaderType::Pointer reader = ReaderType::New();
  WriterType::Pointer writer = WriterType::New();
  ThresholdFilterType::Pointer threshold = ThresholdFilterType::New();
  FilterType::Pointer filter = FilterType::New();
  RelabelType::Pointer relabel = RelabelType::New();
  
  FilterWatcher watcher(filter);
  watcher.QuietOn();

  reader->SetFileName( argv[1] );

  InternalPixelType threshold_low, threshold_hi;
  threshold_low = atoi( argv[3]);
  threshold_hi = atoi( argv[4]);

  threshold->SetInput (reader->GetOutput());
  threshold->SetInsideValue(itk::NumericTraits<InternalPixelType>::One);
  threshold->SetOutsideValue(itk::NumericTraits<InternalPixelType>::Zero);
  threshold->SetLowerThreshold(threshold_low);
  threshold->SetUpperThreshold(threshold_hi);
  threshold->Update();
  
  // create a mask containing the upper left hand corner and
  // a chunk out of the middle
  MaskImageType::Pointer mask = MaskImageType::New();
  mask->SetRegions(threshold->GetOutput()->GetLargestPossibleRegion());
  mask->CopyInformation(threshold->GetOutput());
  mask->Allocate();
  mask->FillBuffer(itk::NumericTraits<MaskPixelType>::Zero);

  MaskImageType::RegionType maskRegion = mask->GetLargestPossibleRegion();
  MaskImageType::SizeType maskSize = maskRegion.GetSize();

  MaskImageType::RegionType region;
  MaskImageType::SizeType size;
  MaskImageType::IndexType index;
  
  // use upper left corner
  index.Fill(0);
  for (unsigned int i=0; i<MaskImageType::ImageDimension; i++)
    {
    size[i] = static_cast<unsigned long> (0.375 * maskSize[i]);
    }
  region.SetIndex (index);
  region.SetSize (size);

  itk::ImageRegionIterator<MaskImageType> mit(mask,region);
  while (!mit.IsAtEnd())
{'fraction_non_alphanumeric': 0.14329454990814453, 'fraction_numerical': 0.004164115125535823, 'mean_word_length': 5.799333888426311, 'pattern_counts': {'":': 0, '<': 61, '<?xml version=': 0, '>': 65, 'https://': 0, 'lorem ipsum': 0, 'www.': 2, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4741504', 'n_tokens_mistral': 2446, 'n_tokens_neox': 2349, 'n_words': 522}