<commit_before># Copyright EMBL-EBI 2000
# Author: <NAME>
# Creation: 11.07.2000
# Last modified SCP 12.04.2001

# configuration information
# give useful keynames to things

# if states are involved maybe good to have statenames in key.
# parameters should be avail after compile time so
# that you can make changes at runtime.

# some of these options can be specified on the command line (e.g. to
# the RuleManager script) and will override these defaults.
# it may also be possible to specify environment variables like
# ENS_<OPT> (these will be overridden by the settings below).


BEGIN {
package main;

%pipeConf = ( 
    'nfstmp.dir' => '', # working directory for err/outfiles
    'pep_file'   => '/scratch1/ensembl/mongin/pep_tmp.fa',
    'DBI.driver' => 'mysql',
    'dbhost'     => 'mysql',
    'dbname'     => '', #Database name for pipeline db
    'dbuser'     => '', #Database user for pipeline db
    'queue'      => '', #farm queue
    'batchsize'  => 1,         # no of jobs to send to LSF together
    'bindir'     => '',
    'datadir'    => '',
    'usenodes'   => '',        # farm nodes to use (default all)
    'autoupdate' => 1,         # true->update InputIdAnalysis via Job
    'runner'     => '',        # path to runner.pl, needed by Job.pm
    'cpname'     => '', #this is for crosscomparer comparadb name
    'cpuser'     => '' #and comparadb user
    );<commit_msg>Removing hardcoded pep file for manu's stuff<commit_after># Copyright EMBL-EBI 2000
# Author: <NAME>
# Creation: 11.07.2000
# Last modified SCP 12.04.2001

# configuration information
# give useful keynames to things

# if states are involved maybe good to have statenames in key.
# parameters should be avail after compile time so
# that you can make changes at runtime.

# some of these options can be specified on the command line (e.g. to
# the RuleManager script) and will override these defaults.
# it may also be possible to specify environment variables like
# ENS_<OPT> (these will be overridden by the settings below).


BEGIN {
package main;

%pipeConf = ( 
    'nfstmp.dir' => '', # working directory for err/outfiles
    'pep_file'   => '', #
    'DBI.driver' => 'mysql',
    'dbhost'     => 'mysql',
    'dbname'     => '', #Database name for pipeline db
    'dbuser'     => '', #Database user for pipeline db
    'queue'      => '', #farm queue
    'batchsize'  => 1,         # no of jobs to send to LSF together
    'bindir'     => '',
    'datadir'    => '',
    'usenodes'   => '',        # farm nodes to use (default all)
    'autoupdate' => 1,         # true->update InputIdAnalysis via Job
    'runner'     => '',        # path to runner.pl, needed by Job.pm
    'cpname'     => '', #this is for crosscomparer comparadb name
    'cpuser'     => '' #and comparadb user
    );
{'fraction_non_alphanumeric': 0.11998567335243553, 'fraction_numerical': 0.016117478510028652, 'mean_word_length': 2.7896879240162824, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 39, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '659918', 'n_tokens_mistral': 899, 'n_tokens_neox': 844, 'n_words': 321}