<commit_before>class Abyss < Formula
  desc "Genome sequence assembler for short reads"
  homepage "https://www.bcgsc.ca/resources/software/abyss"
  url "https://github.com/bcgsc/abyss/releases/download/2.3.1/abyss-2.3.1.tar.gz"
  sha256 "664045e7903e9732411effc38edb9ebb1a0c1b7636c64b3a14a681f465f43677"
  license all_of: ["GPL-3.0-only", "LGPL-2.1-or-later", "MIT", "BSD-3-Clause"]
  revision 1

  livecheck do
    url :stable
    regex(/^v?(\d+(?:\.\d+)+)$/i)
  end

  bottle do
    sha256 cellar: :any, arm64_big_sur: "bb058d5f870631a365a463928f44d712bf74816d63802afb8d71ef6c25bdd70d"
    sha256 cellar: :any, big_sur:       "e89a82779e47b75a1a890512101ce337ad1115589452e4aadf4a24a4d0fc64b6"
    sha256 cellar: :any, catalina:      "9c8439788542b27321fa85a544ad66f3ede713ff4c3b358fa21af74d8b443a40"
    sha256 cellar: :any, mojave:        "4dc19d24229a313add5756947cb7a236da55c040f91eb9cab8a41d0d201ce0d5"
  end

  head do
    url "https://github.com/bcgsc/abyss.git"

    depends_on "autoconf" => :build
    depends_on "automake" => :build
    depends_on "multimarkdown" => :build
  end

  depends_on "boost" => :build
  depends_on "google-sparsehash" => :build
  depends_on "open-mpi"

  on_macos do<commit_msg>abyss: update 2.3.1_1 bottle.<commit_after>class Abyss < Formula
  desc "Genome sequence assembler for short reads"
  homepage "https://www.bcgsc.ca/resources/software/abyss"
  url "https://github.com/bcgsc/abyss/releases/download/2.3.1/abyss-2.3.1.tar.gz"
  sha256 "664045e7903e9732411effc38edb9ebb1a0c1b7636c64b3a14a681f465f43677"
  license all_of: ["GPL-3.0-only", "LGPL-2.1-or-later", "MIT", "BSD-3-Clause"]
  revision 1

  livecheck do
    url :stable
    regex(/^v?(\d+(?:\.\d+)+)$/i)
  end

  bottle do
    sha256               arm64_big_sur: "21d1cb2d31fa162cefea32db0630fc6011f8d3d0bb7ababa31f8e772820d1c7f"
    sha256 cellar: :any, big_sur:       "e56ce6b9bf533fb34bd2f87e87fb1019e3cccdcdc94d0e665e144121c95ddcad"
    sha256 cellar: :any, catalina:      "5a95037e8675013c34f4119d5a2914706ec3b99f522426878a19f27031ad4d79"
    sha256 cellar: :any, mojave:        "fc1208b6ff7dbcdc23d621076a271a40f1090cab41690ce35433c81425984494"
  end

  head do
    url "https://github.com/bcgsc/abyss.git"

    depends_on "autoconf" => :build
    depends_on "automake" => :build
    depends_on "multimarkdown" => :build
  end

  depends_on "boost" => :build
  depends_on "google-sparsehash" => :build
  depends_on "open-mpi"

  on_macos do
{'fraction_non_alphanumeric': 0.11714285714285715, 'fraction_numerical': 0.19346938775510203, 'mean_word_length': 4.248394004282655, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 13, 'https://': 6, 'lorem ipsum': 0, 'www.': 2, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7611197', 'n_tokens_mistral': 1346, 'n_tokens_neox': 1103, 'n_words': 154}