<commit_before># Users, admins: DO NOT CHANGE THIS FILE! 
# These are the combinations of GENETIC_ALTERATION_TYPE, DATATYPE and STABLE_ID that will
# be allowed by the validator. Changing this file is not recommended by end users as parts of the 
# cBioPortal code currently depend on some of these stable IDs to be exactly as they are specified
# here. The validator will check if the users used the right combinations and can also warn them
# when specific important combinations were found to be missing in their study directory. 
GENETIC_ALTERATION_TYPE	DATATYPE	STABLE_ID
COPY_NUMBER_ALTERATION	DISCRETE	cna
COPY_NUMBER_ALTERATION	DISCRETE	cna_rae
COPY_NUMBER_ALTERATION	DISCRETE	cna_consensus
COPY_NUMBER_ALTERATION	DISCRETE	gistic
COPY_NUMBER_ALTERATION	CONTINUOUS	linear_CNA
COPY_NUMBER_ALTERATION	LOG2-VALUE	log2CNA
MUTATION_EXTENDED	MAF	mutations
MRNA_EXPRESSION	CONTINUOUS	mrna_U133
MRNA_EXPRESSION	Z-SCORE	mrna_U133_Zscores
MRNA_EXPRESSION	Z-SCORE	rna_seq_mrna_median_Zscores
MRNA_EXPRESSION	Z-SCORE	mrna_median_Zscores
MRNA_EXPRESSION	CONTINUOUS	rna_seq_mrna
MRNA_EXPRESSION	CONTINUOUS	rna_seq_v2_mrna
MRNA_EXPRESSION	Z-SCORE	rna_seq_v2_mrna_median_Zscores
MRNA_EXPRESSION	CONTINUOUS	mirna
MRNA_EXPRESSION	Z-SCORE	mirna_median_Zscores
MRNA_EXPRESSION	Z-SCORE	mrna_merged_median_Zscores
MRNA_EXPRESSION	CONTINUOUS	mrna
MRNA_EXPRESSION	DISCRETE	mrna_outliers
MRNA_EXPRESSION	Z-SCORE	mrna_zbynorm
MRNA_EXPRESSION	CONTINUOUS	rna_seq_mrna_capture
MRNA_EXPRESSION	Z-SCORE	rna_seq_mrna_capture_Zscores
METHYLATION	CONTINUOUS	methylation_hm27
METHYLATION	CONTINUOUS	methylation_hm450
FUSION	FUSION	fusion
PROTEIN_LEVEL	LOG2-VALUE	rppa
PROTEIN_LEVEL	Z-SCORE	rppa_Zscores
PROTEIN_LEVEL	CONTINUOUS	protein_quantification
PROTEIN_LEVEL	Z-SCORE	protein_quantification_zscores
GENESET_SCORE	GSVA-SCORE	gsva_scores
GENESET_SCORE	P-VALUE	gsva_pvalues
GENERIC_ASSAY	LIMIT-VALUE	*
STRUCTURAL_VARIANT	SV	structural_variants
<commit_msg>Automated master to release-3.1.0 merge<commit_after># Users, admins: DO NOT CHANGE THIS FILE! 
# These are the combinations of GENETIC_ALTERATION_TYPE, DATATYPE and STABLE_ID that will
# be allowed by the validator. Changing this file is not recommended by end users as parts of the 
# cBioPortal code currently depend on some of these stable IDs to be exactly as they are specified
# here. The validator will check if the users used the right combinations and can also warn them
# when specific important combinations were found to be missing in their study directory. 
GENETIC_ALTERATION_TYPE	DATATYPE	STABLE_ID
COPY_NUMBER_ALTERATION	DISCRETE	cna
COPY_NUMBER_ALTERATION	DISCRETE	cna_rae
COPY_NUMBER_ALTERATION	DISCRETE	cna_consensus
COPY_NUMBER_ALTERATION	DISCRETE	gistic
COPY_NUMBER_ALTERATION	CONTINUOUS	linear_CNA
COPY_NUMBER_ALTERATION	LOG2-VALUE	log2CNA
MUTATION_EXTENDED	MAF	mutations
MRNA_EXPRESSION	CONTINUOUS	mrna_U133
MRNA_EXPRESSION	Z-SCORE	mrna_U133_Zscores
MRNA_EXPRESSION	Z-SCORE	rna_seq_mrna_median_Zscores
MRNA_EXPRESSION	Z-SCORE	mrna_median_Zscores
MRNA_EXPRESSION	CONTINUOUS	rna_seq_mrna
MRNA_EXPRESSION	CONTINUOUS	rna_seq_v2_mrna
MRNA_EXPRESSION	Z-SCORE	rna_seq_v2_mrna_median_Zscores
MRNA_EXPRESSION	CONTINUOUS	mirna
MRNA_EXPRESSION	Z-SCORE	mirna_median_Zscores
MRNA_EXPRESSION	Z-SCORE	mrna_merged_median_Zscores
MRNA_EXPRESSION	CONTINUOUS	mrna
MRNA_EXPRESSION	DISCRETE	mrna_outliers
MRNA_EXPRESSION	Z-SCORE	mrna_zbynorm
MRNA_EXPRESSION	CONTINUOUS	rna_seq_mrna_capture
MRNA_EXPRESSION	CONTINUOUS	mrna_seq_cpm
MRNA_EXPRESSION	CONTINUOUS	mrna_seq_tpm
MRNA_EXPRESSION	Z-SCORE	rna_seq_mrna_capture_Zscores
METHYLATION	CONTINUOUS	methylation_hm27
METHYLATION	CONTINUOUS	methylation_hm450
FUSION	FUSION	fusion
PROTEIN_LEVEL	LOG2-VALUE	rppa
PROTEIN_LEVEL	Z-SCORE	rppa_Zscores
PROTEIN_LEVEL	CONTINUOUS	protein_quantification
PROTEIN_LEVEL	Z-SCORE	protein_quantification_zscores
GENESET_SCORE	GSVA-SCORE	gsva_scores
GENESET_SCORE	P-VALUE	gsva_pvalues
GENERIC_ASSAY	LIMIT-VALUE	*
STRUCTURAL_VARIANT	SV	structural_variants

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