<commit_before><%@ include file="/common/taglibs.jsp"%>

<html>
<head>
<title><fmt:message key="mainMenu.title" /></title>
</head>
<body>
<content tag="heading">
<fmt:message key="mainMenu.heading" />
</content>

<fmt:message key="mainMenu.message" />

<div class="separator" />

<ul class="glassList">
    <li><!--    Paul, uncomment to use webflow implementation    
		<a href="<c:url value="/flowController.htm?_flowId=arrayDesign.Search"/>"><fmt:message key="menu.flow.ArrayDesignSearch"/></a>
--> <a href="<c:url value="/arrayDesigns.htm"/>"><fmt:message
        key="menu.flow.ArrayDesignSearch" /></a></li>
    <li><!-- <a href="<c:url value="/ExperimentList.html"/>">Show Expression Experiments</a>-->
    <a href="<c:url value="/expressionExperiments.htm"/>">Show
    Expression Experiments</a></li>
    <li><a href="<c:url value="/candidateGeneList.htm"/>"><fmt:message
        key="menu.CandidateGeneList" /></li>
    <li><a
        href="<c:url value="/flowController.htm?_flowId=pubMed.Search"/>"><fmt:message
        key="menu.flow.PubMedSearch" /></a></li>
    <li><a href="<c:url value="/bibRef/searchBibRef.html"/>">Search
    Gemma for PubMed Id</a></li>
    <li><a href="<c:url value="/editProfile.html"/>"><fmt:message
        key="menu.user" /></a></li>
    <li><a href="<c:url value="/selectFile.html"/>"><fmt:message
        key="menu.selectFile" /></a></li>
</ul>
</body>
</html><commit_msg>linked mainMenu to the fileUpload flow<commit_after><%@ include file="/common/taglibs.jsp"%>

<html>
<head>
<title><fmt:message key="mainMenu.title" /></title>
</head>
<body>
<content tag="heading">
<fmt:message key="mainMenu.heading" />
</content>

<fmt:message key="mainMenu.message" />

<div class="separator" />

<ul class="glassList">
    <li><!--    Paul, uncomment to use webflow implementation    
		<a href="<c:url value="/flowController.htm?_flowId=arrayDesign.Search"/>"><fmt:message key="menu.flow.ArrayDesignSearch"/></a>
--> <a href="<c:url value="/arrayDesigns.htm"/>"><fmt:message
        key="menu.flow.ArrayDesignSearch" /></a></li>
    <li><!-- <a href="<c:url value="/ExperimentList.html"/>">Show Expression Experiments</a>-->
    <a href="<c:url value="/expressionExperiments.htm"/>">Show
    Expression Experiments</a></li>
    <li><a href="<c:url value="/candidateGeneList.htm"/>"><fmt:message
        key="menu.CandidateGeneList" /></li>
    <li><a
        href="<c:url value="/flowController.htm?_flowId=pubMed.Search"/>"><fmt:message
        key="menu.flow.PubMedSearch" /></a></li>
    <li><a href="<c:url value="/bibRef/searchBibRef.html"/>">Search
    Gemma for PubMed Id</a></li>
    <li><a href="<c:url value="/editProfile.html"/>"><fmt:message
        key="menu.user" /></a></li>
    <li><a href="<c:url value="/flowController.htm?_flowId=fileUploader"/>"><fmt:message
        key="menu.selectFile" /></a></li>
</ul>
</body>
</html>
{'fraction_non_alphanumeric': 0.23549843695727682, 'fraction_numerical': 0.0, 'mean_word_length': 4.353159851301116, 'pattern_counts': {'":': 0, '<': 133, '<?xml version=': 0, '>': 133, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4768832', 'n_tokens_mistral': 1015, 'n_tokens_neox': 977, 'n_words': 160}