<commit_before>#!/usr/bin/env python
# vim: tabstop=8 expandtab shiftwidth=4 softtabstop=4

import sys
import os
from src.dependency_checker import primer3_core_is_installed, blastall_is_installed
from src.fasta_reader import FastaReader
from src.gff_reader import GFFReader

## DEPENDENCIES: primer3_core, blast (?)
## input: fasta containing mrna_ids and CDS 
##        gff for genome from which fasta is pulled

def main():<commit_msg>added import to capn<commit_after>#!/usr/bin/env python
# vim: tabstop=8 expandtab shiftwidth=4 softtabstop=4

import sys
import os
from src.dependency_checker import primer3_core_is_installed, blastall_is_installed
from src.fasta_reader import FastaReader
from src.gff_reader import GFFReader
from src.boulder_io_formatter import BoulderIOFormatter

## DEPENDENCIES: primer3_core, blast (?)
## input: fasta containing mrna_ids and CDS 
##        gff for genome from which fasta is pulled

def main():
{'fraction_non_alphanumeric': 0.06922257720979766, 'fraction_numerical': 0.010649627263045794, 'mean_word_length': 5.861313868613139, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2303155', 'n_tokens_mistral': 317, 'n_tokens_neox': 305, 'n_words': 92}