<commit_before>language: python
python:
  - "2.7"
virtualenv:
  system_site_packages: true
before_install:
  - sudo apt-get install python-numpy python-scipy python-matplotlib
install:
  - pip install sympy networkx ghalton pygraphviz
  - wget http://mmbios.org/index.php/bionetgen-2-2-5-stable/bionetgen-2-2-5-stable-zip?format=raw -O BioNetGen-2.2.5-stable.zip
  - unzip BioNetGen-2.2.5-stable.zip
  - sudo ln -s `pwd`/BioNetGen-2.2.5-stable /usr/local/share/BioNetGen
  - wget http://downloads.sourceforge.net/project/stochkit/StochKit2/StochKit2.0.11/StochKit2.0.11.tgz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fstochkit%2Ffiles%2F&ts=1434079825&use_mirror=iweb
  - curl --silent -L "http://downloads.sourceforge.net/project/stochkit/StochKit2/StochKit2.0.11/StochKit2.0.11.tgz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fstochkit%2Ffiles%2F&ts=1434079825&use_mirror=iweb" | tar xz
  - StochKit2.0.11/install.sh
  - git clone https://github.com/JohnAbel/gillespy.git
  - sudo STOCHKIT_HOME=$HOME/StochKit2.0.11/ python setup.py install
script: nosetests
notifications:
  slack: lopezlab:6RrEQYyVeSjYJKLWTovcqiM1<commit_msg>Travis: Change directory needed for gillespy installation<commit_after>language: python
python:
  - "2.7"
virtualenv:
  system_site_packages: true
before_install:
  - sudo apt-get install python-numpy python-scipy python-matplotlib
install:
  - pip install sympy networkx ghalton pygraphviz
  - wget http://mmbios.org/index.php/bionetgen-2-2-5-stable/bionetgen-2-2-5-stable-zip?format=raw -O BioNetGen-2.2.5-stable.zip
  - unzip BioNetGen-2.2.5-stable.zip
  - sudo ln -s `pwd`/BioNetGen-2.2.5-stable /usr/local/share/BioNetGen
  - wget http://downloads.sourceforge.net/project/stochkit/StochKit2/StochKit2.0.11/StochKit2.0.11.tgz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fstochkit%2Ffiles%2F&ts=1434079825&use_mirror=iweb
  - curl --silent -L "http://downloads.sourceforge.net/project/stochkit/StochKit2/StochKit2.0.11/StochKit2.0.11.tgz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fstochkit%2Ffiles%2F&ts=1434079825&use_mirror=iweb" | tar xz
  - StochKit2.0.11/install.sh
  - git clone https://github.com/JohnAbel/gillespy.git
  - cd gillespy && sudo STOCHKIT_HOME=$HOME/StochKit2.0.11/ python setup.py install && cd ..
script: nosetests
notifications:
  slack: lopezlab:6RrEQYyVeSjYJKLWTovcqiM1
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{'dir': 'git-commits-cleaned', 'id': '4569403', 'n_tokens_mistral': 1083, 'n_tokens_neox': 1005, 'n_words': 116}