<commit_before>class Muscle < Formula
  desc "Multiple sequence alignment program"
  homepage "http://www.drive5.com/muscle/"
  # doi "10.1093/nar/gkh340", "10.1186/1471-2105-5-113"
  # tag "bioinformatics"

  url "http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz"
  version "3.8.31"
  sha256 "43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad"
  revision 1

  bottle do
    cellar :any_skip_relocation
    sha256 "095e948e36fbdcea5dce3aa55aa7a5aa76101d41e86306b15aa15f827c70eac3" => :el_capitan
    sha256 "2b4484979ad18f9cfaff6905925424666cdbb46972000cbd87155c24b27accd7" => :yosemite
    sha256 "c020974f146e0b5f35c16e79aa64c00b2cd06ea3ecd16d5f39e26c11318a2e45" => :mavericks
  end

  def install<commit_msg>muscle: update 3.8.31_1 bottle for Linuxbrew.<commit_after>class Muscle < Formula
  desc "Multiple sequence alignment program"
  homepage "http://www.drive5.com/muscle/"
  # doi "10.1093/nar/gkh340", "10.1186/1471-2105-5-113"
  # tag "bioinformatics"

  url "http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz"
  version "3.8.31"
  sha256 "43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad"
  revision 1

  bottle do
    cellar :any_skip_relocation
    sha256 "095e948e36fbdcea5dce3aa55aa7a5aa76101d41e86306b15aa15f827c70eac3" => :el_capitan
    sha256 "2b4484979ad18f9cfaff6905925424666cdbb46972000cbd87155c24b27accd7" => :yosemite
    sha256 "c020974f146e0b5f35c16e79aa64c00b2cd06ea3ecd16d5f39e26c11318a2e45" => :mavericks
    sha256 "6bbc809f7436978ce1c7894b1bb266c77d2ccabdd9a702d991bb0bc0e798f352" => :x86_64_linux
  end

  def install
{'fraction_non_alphanumeric': 0.09203211859172329, 'fraction_numerical': 0.2989499691167387, 'mean_word_length': 5.612244897959184, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 10, 'https://': 0, 'lorem ipsum': 0, 'www.': 4, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2031541', 'n_tokens_mistral': 1005, 'n_tokens_neox': 759, 'n_words': 85}