<commit_before>{% set name = "disco" %}
{% set version = "1.0" %}
{% set md5 = "774c877e4cf31ebc73ee5ad66a4ed054" %}

package:
  name: {{ name }}
  version: {{ version }}

source:
  fn: {{ version }}.tar.gz
  url: https://github.com/abiswas-odu/Disco/archive/{{ version }}.tar.gz
  md5: {{ md5 }}

build:
  number: 0
  skip: False

requirements:
  build:
    - gcc   # [not osx]
    - llvm  # [osx]
    - openmpi
    - zlib

  run:
    - libgcc    # [not osx]
    - openmpi
    - zlib

test:
  commands:
    - runDisco.sh -h 2>&1 | grep "runDisco"
    - runDisco-MPI.sh -h  2>&1 | grep "runDisco"
    - runDisco-MPI-ALPS.sh -h 2>&1 | grep "runDisco"
    - runDisco-MPI-SLURM.sh -h 2>&1 | grep "runDisco"
    - runAssembly.sh -h 2>&1 | grep "runAssembly"
    - runAssembly-MPI.sh -h 2>&1 | grep "runAssembly"
    - runECC.sh -h 2>&1 | grep "runECC"

about:
  home: http://disco.omicsbio.org/
  license: 'GPL-3.0'
  summary: 'Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler'<commit_msg>Force openmpi version<commit_after>{% set name = "disco" %}
{% set version = "1.0" %}
{% set md5 = "774c877e4cf31ebc73ee5ad66a4ed054" %}

package:
  name: {{ name }}
  version: {{ version }}

source:
  fn: {{ version }}.tar.gz
  url: https://github.com/abiswas-odu/Disco/archive/{{ version }}.tar.gz
  md5: {{ md5 }}

build:
  number: 0
  skip: False

requirements:
  build:
    - gcc   # [not osx]
    - llvm  # [osx]
    - openmpi >=1.8
    - zlib

  run:
    - libgcc    # [not osx]
    - openmpi >=1.8
    - zlib

test:
  commands:
    - runDisco.sh -h 2>&1 | grep "runDisco"
    - runDisco-MPI.sh -h  2>&1 | grep "runDisco"
    - runDisco-MPI-ALPS.sh -h 2>&1 | grep "runDisco"
    - runDisco-MPI-SLURM.sh -h 2>&1 | grep "runDisco"
    - runAssembly.sh -h 2>&1 | grep "runAssembly"
    - runAssembly-MPI.sh -h 2>&1 | grep "runAssembly"
    - runECC.sh -h 2>&1 | grep "runECC"

about:
  home: http://disco.omicsbio.org/
  license: 'GPL-3.0'
  summary: 'Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler'
{'fraction_non_alphanumeric': 0.1695736434108527, 'fraction_numerical': 0.040697674418604654, 'mean_word_length': 2.5664939550949915, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 19, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3590404', 'n_tokens_mistral': 939, 'n_tokens_neox': 867, 'n_words': 193}