<commit_before>{stdenv, fetchurl, cpio}:

# Note: you may want the older C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz

stdenv.mkDerivation rec {
  name = "ncbi_tools";
  ncbi_version="Dec_31_2008";
  src = fetchurl {
    url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz";
    sha256 = "1b2v0dcdqn3bysgdkj57sxmd6s0hc9wpnxssviz399g6plhxggbr";
  };

  configureFlags = "--without-debug --with-bin-release --with-dll --without-static";
  # PIC flag (position independent code for shared libraries)
  NIX_CXXFLAGS_COMPILE = if stdenv.system == "x86_64-linux" then "-fPIC" else "";
  buildInputs = [cpio];

  meta = {
    description = ''NCBI Bioinformatics toolbox (incl. BLAST)'';
    longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support'';<commit_msg>Added note on package status for 64 bits<commit_after>{stdenv, fetchurl, cpio}:

# The NCBI package only builds on 32bits - on 64bits it breaks because
# of position dependent code. Debian packagers have written replacement
# make files(!). Either we use these, or negotiate a version which can
# be pushed upstream to NCBI.
#
# Another note: you may want the older and deprecated C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz

stdenv.mkDerivation rec {
  name = "ncbi_tools";
  ncbi_version="Dec_31_2008";
  src = fetchurl {
    url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz";
    sha256 = "1b2v0dcdqn3bysgdkj57sxmd6s0hc9wpnxssviz399g6plhxggbr";
  };

  configureFlags = "--without-debug --with-bin-release --with-dll --without-static";
  # PIC flag (position independent code for shared libraries)
  NIX_CXXFLAGS_COMPILE = if stdenv.system == "x86_64-linux" then "-fPIC" else "";
  buildInputs = [cpio];

  meta = {
    description = ''NCBI Bioinformatics toolbox (incl. BLAST)'';
    longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support'';
{'fraction_non_alphanumeric': 0.1261384335154827, 'fraction_numerical': 0.04644808743169399, 'mean_word_length': 4.451612903225806, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7056162', 'n_tokens_mistral': 888, 'n_tokens_neox': 759, 'n_words': 181}