<commit_before># Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class Structure(MakefilePackage):
    """Structure is a free software package for using multi-locus genotype
       data to investigate population structure."""

    homepage = "https://web.stanford.edu/group/pritchardlab/structure.html"
    url      = "https://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz"

    version('2.3.4', sha256='f2b72b9189a514f53e921bbdc1aa3dbaca7ac34a8467af1f972c7e4fc9c0bb37')

    depends_on('jdk', type=('build', 'run'))

    def url_for_version(self, version):
        url = "http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v{0}/structure_kernel_source.tar.gz"
        return url.format(version)

    def install(self, spec, prefix):<commit_msg>structure: fixing build errors with gcc10+ removing unused dep (#28097)<commit_after># Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class Structure(MakefilePackage):
    """Structure is a free software package for using multi-locus genotype
       data to investigate population structure."""

    homepage = "https://web.stanford.edu/group/pritchardlab/structure.html"
    url      = "https://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz"

    version('2.3.4', sha256='f2b72b9189a514f53e921bbdc1aa3dbaca7ac34a8467af1f972c7e4fc9c0bb37')

    def url_for_version(self, version):
        url = "http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v{0}/structure_kernel_source.tar.gz"
        return url.format(version)

    @when('%gcc@10:')
    def edit(self, spec, prefix):
        filter_file(r'(CFLAGS =.*$)', '\\1 -fcommon', 'Makefile')

    def install(self, spec, prefix):
{'fraction_non_alphanumeric': 0.11726384364820847, 'fraction_numerical': 0.05490926012098651, 'mean_word_length': 4.443037974683544, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3867168', 'n_tokens_mistral': 762, 'n_tokens_neox': 693, 'n_words': 142}