<commit_before>package:
  name: locarna
  version: "1.9.1"

about:
  home: http://www.bioinf.uni-freiburg.de/Software/LocARNA/
  license: GPL
  license_file: COPYING
  summary: Multiple alignment of RNAs

build:
  number: 1

source:
  fn: locarna-1.9.1.tar.gz
  url: "https://github.com/s-will/LocARNA/releases/download/v1.9.1/locarna-1.9.1.tar.gz"
  sha256: d5c51282ff2f33e9fc90d6b3d85e807d1a2503272c4401d1bdce77f546178b45

requirements:
  build: 
    - viennarna ==2.3.3
    - llvm # [osx]
    - gcc # [linux]
  run: 
    - viennarna ==2.3.3
    - perl-threaded
    - libgcc # [linux]

test:
  commands:
    - mlocarna --version  
    - locarna --version
    - locarna_p --version
    - sparse --version
    - exparna_p --version
    - echo -e ">D10744\nGGAAAAUUGAUCAUCGGCAAGAUAAGUUAUUUACUAAAUAAUAGGAUUUAAUAACCUGGUGAGUUCGAAUCUCACAUUUUCCG" | locarna_rnafold_pp --in-loop --stacking --noLP -p0.5 |head -n3
<commit_msg>rebuild with latest perl version<commit_after>package:
  name: locarna
  version: "1.9.1"

about:
  home: http://www.bioinf.uni-freiburg.de/Software/LocARNA/
  license: GPL
  license_file: COPYING
  summary: Multiple alignment of RNAs

build:
  number: 2

source:
  fn: locarna-1.9.1.tar.gz
  url: "https://github.com/s-will/LocARNA/releases/download/v1.9.1/locarna-1.9.1.tar.gz"
  sha256: d5c51282ff2f33e9fc90d6b3d85e807d1a2503272c4401d1bdce77f546178b45

requirements:
  build: 
    - viennarna ==2.3.3
    - llvm # [osx]
    - gcc # [linux]
  run: 
    - viennarna ==2.3.3
    - perl
    - libgcc # [linux]

test:
  commands:
    - mlocarna --version  
    - locarna --version
    - locarna_p --version
    - sparse --version
    - exparna_p --version
    - echo -e ">D10744\nGGAAAAUUGAUCAUCGGCAAGAUAAGUUAUUUACUAAAUAAUAGGAUUUAAUAACCUGGUGAGUUCGAAUCUCACAUUUUCCG" | locarna_rnafold_pp --in-loop --stacking --noLP -p0.5 |head -n3

{'fraction_non_alphanumeric': 0.12730227518959913, 'fraction_numerical': 0.0780065005417118, 'mean_word_length': 2.913135593220339, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 5, 'https://': 2, 'lorem ipsum': 0, 'www.': 2, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2101056', 'n_tokens_mistral': 900, 'n_tokens_neox': 807, 'n_words': 130}