<commit_before># AraTiny, Test Knetminer Instance

This project and its submodules contains an instance of Knetminer, working on a tiny version of the Arabidopsis 
dataset (the same as the one used for [Docker](../docker)).

The project has the double function of running automated integration tests (currently inside [aratiny-ws](aratiny-ws))
and to run a sample instance manually from your computer, [using simple commands](manual-test), so that you can try
Knetminer and see the effect of new changes on your local (development) copy.

## Summary

* [How to run manually](#how-to-run-manually)
  * [Requirements:](#requirements)
  * [Downloading this project](#downloading-this-project)
  * [Running aratiny\-ws (i\.e\., the Knetminer API)](#running-aratiny-ws-ie-the-knetminer-api)
  * [Running the client (i\.e\., the User interface)](#running-the-client-ie-the-user-interface)
  * [Running in 'Neo4j' mode](#running-in-neo4j-mode)
* [Using the aratinty project for Cypher\-based semantic motif queries\.](#using-the-aratinty-project-for-cypher-based-semantic-motif-queries)
  * [Rules for valid semantic motif queries](#rules-for-valid-semantic-motif-queries)
* [Troubleshooting](#troubleshooting)

*(summary created via [gh-md-toc](https://github.com/ekalinin/github-markdown-toc.go))*


## How to run manually


### Requirements:
<commit_msg>Minor change to the aratiny's README.<commit_after># AraTiny, Test Knetminer Instance

This project and its submodules define an instance of Knetminer, working on a tiny sample of the Arabidopsis 
dataset (the same as the one used for [Docker](../docker)).

The project has the double function of running automated integration tests (currently inside [aratiny-ws](aratiny-ws))
and running a Knetminer sample instance manually from your computer, [using simple commands](manual-test), so that you 
can try Knetminer and see the effect of new changes on your local (development) copy.

## Summary

* [How to run manually](#how-to-run-manually)
  * [Requirements:](#requirements)
  * [Downloading this project](#downloading-this-project)
  * [Running aratiny\-ws (i\.e\., the Knetminer API)](#running-aratiny-ws-ie-the-knetminer-api)
  * [Running the client (i\.e\., the User interface)](#running-the-client-ie-the-user-interface)
  * [Running in 'Neo4j' mode](#running-in-neo4j-mode)
* [Using the aratinty project for Cypher\-based semantic motif queries\.](#using-the-aratinty-project-for-cypher-based-semantic-motif-queries)
  * [Rules for valid semantic motif queries](#rules-for-valid-semantic-motif-queries)
* [Troubleshooting](#troubleshooting)

*(summary created via [gh-md-toc](https://github.com/ekalinin/github-markdown-toc.go))*


## How to run manually


### Requirements:

{'fraction_non_alphanumeric': 0.12660080497621662, 'fraction_numerical': 0.0014635931211123307, 'mean_word_length': 4.892241379310345, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 4, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2800348', 'n_tokens_mistral': 920, 'n_tokens_neox': 844, 'n_words': 261}