<commit_before>dataFilesLocation = ${data.files.location}

# Module atlas-base

# Experiment files location properties, used by several classes
experiment.kryo_expressions.path.template = ${data.files.location}/serialized_expression/{0}.kryo

# uk.ac.ebi.atlas.solr.admin.BioentityIndexAdmin
bioentity.properties = ${data.files.location}/bioentity_properties/
# uk.ac.ebi.atlas.solr.admin.BioentityIndex
bioentity.properties.ignore_for_gxa_index = go,interpro

# Ontology traders
# uk.ac.ebi.atlas.bioentity.interpro.InterProTrader
interpro.terms.file = ${data.files.location}/bioentity_properties/interpro/interproIDToTypeTerm.tsv
# uk.ac.ebi.atlas.bioentity.go.GoPoTermTrader
go.terms.file = ${data.files.location}/bioentity_properties/go/goIDToTerm.tsv
# uk.ac.ebi.atlas.experimentimport.efo.EFOTreeNodesTrader
efo.owl.file = ${data.files.location}/ontology/efo.owl<commit_msg>Dummy change to kick off Bamboo plan ATLASBASE<commit_after>dataFilesLocation = ${data.files.location}

# Experiment files location properties, used by several classes
experiment.kryo_expressions.path.template = ${data.files.location}/serialized_expression/{0}.kryo

# uk.ac.ebi.atlas.solr.admin.BioentityIndexAdmin
bioentity.properties = ${data.files.location}/bioentity_properties/
# uk.ac.ebi.atlas.solr.admin.BioentityIndex
bioentity.properties.ignore_for_gxa_index = go,interpro

# Ontology traders
# uk.ac.ebi.atlas.bioentity.interpro.InterProTrader
interpro.terms.file = ${data.files.location}/bioentity_properties/interpro/interproIDToTypeTerm.tsv
# uk.ac.ebi.atlas.bioentity.go.GoPoTermTrader
go.terms.file = ${data.files.location}/bioentity_properties/go/goIDToTerm.tsv
# uk.ac.ebi.atlas.experimentimport.efo.EFOTreeNodesTrader
efo.owl.file = ${data.files.location}/ontology/efo.owl
{'fraction_non_alphanumeric': 0.12415349887133183, 'fraction_numerical': 0.001128668171557562, 'mean_word_length': 6.296296296296297, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3100029', 'n_tokens_mistral': 634, 'n_tokens_neox': 617, 'n_words': 66}