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AllosMod is a protocol to set up and run simulations based on a modeled energy landscape that you create. Carefully
designed energy landscapes allow efficient molecular dynamics sampling at constant temperatures, thereby providing
ergodic sampling of conformational space (such as for modeling of allostery). The protocol generates a shell script
suitable for running on a Linux compute cluster.

Web interfaces to the protocol are also available:<commit_msg>Rename master branch to main<commit_after>[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3234956.svg)](https://doi.org/10.5281/zenodo.3234956)
[![docs](https://readthedocs.org/projects/allosmod/badge/)](https://allosmod.readthedocs.org/)
[![Build Status](https://github.com/salilab/allosmod/workflows/build/badge.svg?branch=main)](https://github.com/salilab/allosmod/actions?query=workflow%3Abuild)
[![codecov](https://codecov.io/gh/salilab/allosmod-lib/branch/main/graph/badge.svg)](https://codecov.io/gh/salilab/allosmod-lib)

AllosMod is a protocol to set up and run simulations based on a modeled energy landscape that you create. Carefully
designed energy landscapes allow efficient molecular dynamics sampling at constant temperatures, thereby providing
ergodic sampling of conformational space (such as for modeling of allostery). The protocol generates a shell script
suitable for running on a Linux compute cluster.

Web interfaces to the protocol are also available:
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