<commit_before>class Skewer < Formula
  desc "Fast and accurate NGS adapter trimmer"
  homepage "http://sourceforge.net/projects/skewer/"
  # tag "bioinformatics"
  # doi "10.1186/1471-2105-15-182"

  url "https://github.com/relipmoc/skewer.git",
    :revision => "e8e05fc506e94f964d671c7f0349585baf8d286c"
  version "0.1.126"

  bottle do
    cellar :any_skip_relocation
    sha256 "8d7c6e923b77aa9afb8c1334fa531dc34ecb77a00ebd5a0b7c0a5f499c1ddaf2" => :el_capitan
    sha256 "a1396d4d7a617f8abd23b08e1d8ac0d9a995fa1872a556a6dff184513020a4dc" => :yosemite
    sha256 "4f7f544bb0ec00a4ab303a4022cfa1c454034bc5b2be7f5613e3cc553e69d596" => :mavericks
    sha256 "3d7443bd5e0356d3d1ec6e3185f818e5cedd3cf0d2e3e2444e16e1c22326f269" => :x86_64_linux
  end

  def install
    system "make", "CXXFLAGS=-O2 -c"
    bin.install "skewer"
    doc.install "README.md", "LICENSE"
  end

  test do
    assert_match "Nextera", shell_output("skewer --help 2>&1", 1)
  end
end
<commit_msg>skewer: Update homepage and url and add head<commit_after>class Skewer < Formula
  desc "Fast and accurate NGS adapter trimmer"
  homepage "https://github.com/relipmoc/skewer"
  url "https://github.com/relipmoc/skewer/archive/0.1.126.tar.gz"
  sha256 "3430fdddcdbea0f5c852b330f99f8773b57f9053bc3ace9f89367e836c2a1332"
  head "https://github.com/relipmoc/skewer.git"
  # doi "10.1186/1471-2105-15-182"
  # tag "bioinformatics"

  bottle do
    cellar :any_skip_relocation
    sha256 "8d7c6e923b77aa9afb8c1334fa531dc34ecb77a00ebd5a0b7c0a5f499c1ddaf2" => :el_capitan
    sha256 "a1396d4d7a617f8abd23b08e1d8ac0d9a995fa1872a556a6dff184513020a4dc" => :yosemite
    sha256 "4f7f544bb0ec00a4ab303a4022cfa1c454034bc5b2be7f5613e3cc553e69d596" => :mavericks
    sha256 "3d7443bd5e0356d3d1ec6e3185f818e5cedd3cf0d2e3e2444e16e1c22326f269" => :x86_64_linux
  end

  def install
    system "make", "CXXFLAGS=-O2 -c"
    bin.install "skewer"
    doc.install "README.md", "LICENSE"
  end

  test do
    assert_match "USAGE", shell_output("#{bin}/skewer --help 2>&1", 1)
  end
end

{'fraction_non_alphanumeric': 0.09940944881889764, 'fraction_numerical': 0.22539370078740156, 'mean_word_length': 4.997050147492625, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 14, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7333832', 'n_tokens_mistral': 1169, 'n_tokens_neox': 952, 'n_words': 129}