<commit_before>#################################################################
# Dockerfile
#
# Version:          2
# Software:         Novor
# Software Version: 1b
# Description:      real-time peptide de novo sequencing
# Website:          http://www.rapidnovor.com/
# Tags:             Proteomics
# Provides:         novor 1b
# Base Image:       biodckr/biodocker:latest
# Build Cmd:        docker build --rm -t biodckr/novor 1b/.
# Pull Cmd:         docker pull biodckr/novor
# Run Cmd:          docker run --rm  biodckr/novor novor
#################################################################

# Set the base image
FROM biodckr/biodocker:latest

################## BEGIN INSTALLATION ###########################

RUN ZIP=novor_academic_latest.zip && \
  wget https://github.com/BioDocker/software-archive/releases/download/NovoR/$ZIP -O /tmp/$ZIP && \
  unzip /tmp/$ZIP -d /home/biodocker/bin/ && \
  rm /tmp/$ZIP && \
  bash -c 'echo -e "#!/bin/bash\njava -jar /home/biodocker/bin/novor_v1b/lib/novor.jar $@" > /home/biodocker/bin/novor' && \
  chmod +x /home/biodocker/bin/novor

ENV PATH /home/biodocker/bin:$PATH

USER biodocker

WORKDIR /data/

##################### INSTALLATION END ##########################

# File Author / Maintainer
MAINTAINER <NAME> <<EMAIL>>
# Modified by <NAME>revost 01-26-2016<commit_msg>updated novor<commit_after># Base Image
FROM biocontainers/biocontainers:latest

# Metadata
LABEL base.image="biocontainers:latest"
LABEL version="2"
LABEL software="Novor"
LABEL software.version="1b"
LABEL description="real-time peptide de novo sequencing"
LABEL website="http://www.rapidnovor.com/"
LABEL documentation="http://www.rapidnovor.com/"
LABEL license="http://www.rapidnovor.com/"
LABEL tags="Proteomics"

# Maintainer
MAINTAINER <NAME> <<EMAIL>>

RUN ZIP=novor_academic_latest.zip && \
  wget https://github.com/BioDocker/software-archive/releases/download/NovoR/$ZIP -O /tmp/$ZIP && \
  unzip /tmp/$ZIP -d /home/biodocker/bin/ && \
  rm /tmp/$ZIP && \
  bash -c 'echo -e "#!/bin/bash\njava -jar /home/biodocker/bin/novor_v1b/lib/novor.jar $@" > /home/biodocker/bin/novor' && \
  chmod +x /home/biodocker/bin/novor

ENV PATH /home/biodocker/bin:$PATH

USER biodocker

WORKDIR /data/
{'fraction_non_alphanumeric': 0.22935368043087973, 'fraction_numerical': 0.00718132854578097, 'mean_word_length': 3.7526652452025586, 'pattern_counts': {'":': 0, '<': 10, '<?xml version=': 0, '>': 12, 'https://': 2, 'lorem ipsum': 0, 'www.': 4, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7277659', 'n_tokens_mistral': 820, 'n_tokens_neox': 773, 'n_words': 157}