<commit_before><?xml version="1.0" encoding="UTF-8"?>

<beans xmlns="http://www.springframework.org/schema/beans"
        xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xmlns:context="http://www.springframework.org/schema/context"
        xsi:schemaLocation="http://www.springframework.org/schema/beans
        http://www.springframework.org/schema/beans/spring-beans-3.1.xsd
        http://www.springframework.org/schema/context
        http://www.springframework.org/schema/context/spring-context-3.1.xsd"
    default-autowire="byName">
    
  <bean id="helpTagWorkflowArea" class="java.lang.String">
  	<constructor-arg><value>helpTag</value></constructor-arg>
  </bean>
  
  <bean class="edu.yu.einstein.wasp.load.UiFieldFamilyWrapper" id="helpTagUiFieldWrapper">
    <property name="baseLocale" value="en_US" />
    <property name="baseArea" value="#{helpTagWorkflowArea}" />
  </bean>


  <bean id="helpTagWorkflow" class="edu.yu.einstein.wasp.load.WorkflowLoader" depends-on="helpTagLibrarySampleSubtypeResource">
    <property name="area" value="#{helpTagWorkflowArea}" />
    <property name="domain" value="#{helpTagPluginDomain}" />
    <property name="name" value="HELP Tagging" />
    <property name="pageFlowOrder">
      <list>
		<value>/jobsubmit/modifymeta/{n}</value>
		<value>/jobsubmit/resource/mps/{n}</value>
		<value>/jobsubmit/samples/{n}</value>
		<value>/jobsubmit/cells/{n}</value>
		<value>/jobsubmit/helpTag/pair/{n}</value> 
		<value>/jobsubmit/software/aligner/{n}</value>
		<value>/jobsubmit/software/helptagPipeline/{n}</value>
		<!-- <value>/jobsubmit/verify/{n}</value> -->
		<value>/jobsubmit/submit/{n}</value>
		<value>/jobsubmit/ok</value>
      </list>
    </property>

    <property name="dependencies">
      <list>
        <value>mps</value>
        <value>aligner</value>
        <value>helptagPipeline</value>
      </list>
    </property>

    <property name="sampleSubtypes">
      <set>
        <value>helptagLibrarySample</value>
      </set>
    </property>
    
    <property name="uiFieldsFromWrapper">
      <list>
        <bean parent="helpTagUiFieldWrapper"><commit_msg>added jobFlowBatchJob property<commit_after><?xml version="1.0" encoding="UTF-8"?>

<beans xmlns="http://www.springframework.org/schema/beans"
        xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xmlns:context="http://www.springframework.org/schema/context"
        xsi:schemaLocation="http://www.springframework.org/schema/beans
        http://www.springframework.org/schema/beans/spring-beans-3.1.xsd
        http://www.springframework.org/schema/context
        http://www.springframework.org/schema/context/spring-context-3.1.xsd"
    default-autowire="byName">
    
  <bean id="helpTagWorkflowArea" class="java.lang.String">
  	<constructor-arg><value>helpTag</value></constructor-arg>
  </bean>
  
  <bean class="edu.yu.einstein.wasp.load.UiFieldFamilyWrapper" id="helpTagUiFieldWrapper">
    <property name="baseLocale" value="en_US" />
    <property name="baseArea" value="#{helpTagWorkflowArea}" />
  </bean>


  <bean id="helpTagWorkflow" class="edu.yu.einstein.wasp.load.WorkflowLoader" depends-on="helpTagLibrarySampleSubtypeResource">
    <property name="area" value="#{helpTagWorkflowArea}" />
    <property name="domain" value="#{helpTagPluginDomain}" />
    <property name="name" value="HELP Tagging" />
    <property name="pageFlowOrder">
      <list>
		<value>/jobsubmit/modifymeta/{n}</value>
		<value>/jobsubmit/resource/mps/{n}</value>
		<value>/jobsubmit/samples/{n}</value>
		<value>/jobsubmit/cells/{n}</value>
		<value>/jobsubmit/helpTag/pair/{n}</value> 
		<value>/jobsubmit/software/aligner/{n}</value>
		<value>/jobsubmit/software/helptagPipeline/{n}</value>
		<!-- <value>/jobsubmit/verify/{n}</value> -->
		<value>/jobsubmit/submit/{n}</value>
		<value>/jobsubmit/ok</value>
      </list>
    </property>
    
    <property name="jobFlowBatchJob" ref="default.waspJob.jobflow.v1"  />

    <property name="dependencies">
      <list>
        <value>mps</value>
        <value>aligner</value>
        <value>helptagPipeline</value>
      </list>
    </property>

    <property name="sampleSubtypes">
      <set>
        <value>helptagLibrarySample</value>
      </set>
    </property>
    
    <property name="uiFieldsFromWrapper">
      <list>
        <bean parent="helpTagUiFieldWrapper">
{'fraction_non_alphanumeric': 0.18002748511223088, 'fraction_numerical': 0.0057260650480989465, 'mean_word_length': 3.76226826608506, 'pattern_counts': {'":': 0, '<': 124, '<?xml version=': 2, '>': 124, 'https://': 0, 'lorem ipsum': 0, 'www.': 14, 'xml': 8}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4229399', 'n_tokens_mistral': 1470, 'n_tokens_neox': 1411, 'n_words': 154}