<commit_before>UPDATE palias SET tax_id=gs2tax_id('HUMAN') 
	WHERE porigin_id=porigin_id_lookup('Swiss-Prot'::text) AND tax_id IS NULL AND alias ~ '_HUMAN$'::text;

UPDATE palias SET tax_id=gs2tax_id('MOUSE') 
	WHERE porigin_id=porigin_id_lookup('Swiss-Prot'::text) AND tax_id IS NULL AND alias ~ '_MOUSE$'::text;

UPDATE palias SET tax_id=gs2tax_id('RAT') 
	WHERE porigin_id=porigin_id_lookup('Swiss-Prot'::text) AND tax_id IS NULL AND alias ~ '_RAT$'::text;

UPDATE palias SET tax_id=gs2tax_id('HUMAN') 
	WHERE porigin_id=porigin_id_lookup('Refseq'::text) AND descr ~ '[[]Homo sapiens[]]$'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('MOUSE') 
      WHERE porigin_id=porigin_id_lookup('Refseq'::text) AND descr ~ '[[]Mus musculus[]]$'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('RAT') 
      WHERE porigin_id=porigin_id_lookup('Refseq'::text) AND descr ~ '[[]Rattus norvegicus[]]$'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('HUMAN') 
	WHERE porigin_id=porigin_id_lookup('SPDI'::text) AND descr ~ '^Human'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('MOUSE') 
      WHERE porigin_id=porigin_id_lookup('SPDI'::text) AND descr ~ '^Mouse'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('RAT') 
      WHERE porigin_id=porigin_id_lookup('SPDI'::text) AND descr ~ '^Rat'::text AND tax_id IS NULL;
<commit_msg>added mus, MGC/Human, and MGC/Mouse assignments<commit_after>UPDATE palias SET tax_id=gs2tax_id('HUMAN') 
	WHERE porigin_id=porigin_id_lookup('Swiss-Prot'::text) AND tax_id IS NULL AND alias ~ '_HUMAN$'::text;

UPDATE palias SET tax_id=gs2tax_id('MOUSE') 
	WHERE porigin_id=porigin_id_lookup('Swiss-Prot'::text) AND tax_id IS NULL AND alias ~ '_MOUSE$'::text;

UPDATE palias SET tax_id=gs2tax_id('RAT') 
	WHERE porigin_id=porigin_id_lookup('Swiss-Prot'::text) AND tax_id IS NULL AND alias ~ '_RAT$'::text;

UPDATE palias SET tax_id=gs2tax_id('HUMAN') 
	WHERE porigin_id=porigin_id_lookup('Refseq'::text) AND descr ~ '[[]Homo sapiens[]]$'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('MOUSE') 
      WHERE porigin_id=porigin_id_lookup('Refseq'::text) AND descr ~ '[[]Mus musculus[]]$'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('RAT') 
      WHERE porigin_id=porigin_id_lookup('Refseq'::text) AND descr ~ '[[]Rattus norvegicus[]]$'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('HUMAN') 
	WHERE porigin_id=porigin_id_lookup('SPDI'::text) AND descr ~ '^Human'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('MOUSE') 
      WHERE porigin_id=porigin_id_lookup('SPDI'::text) AND descr ~ '^Mouse'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('RAT') 
      WHERE porigin_id=porigin_id_lookup('SPDI'::text) AND descr ~ '^Rat'::text AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('MOUSE') 
	WHERE porigin_id=porigin_id_lookup('mus'::text) AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('HUMAN') 
	WHERE porigin_id=porigin_id_lookup('MGC/Human'::text) AND tax_id IS NULL;

UPDATE palias SET tax_id=gs2tax_id('MOUSE') 
	WHERE porigin_id=porigin_id_lookup('MGC/Mouse'::text) AND tax_id IS NULL;

{'fraction_non_alphanumeric': 0.1368354828562441, 'fraction_numerical': 0.006605850896508336, 'mean_word_length': 6.851851851851852, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '106576', 'n_tokens_mistral': 1303, 'n_tokens_neox': 1264, 'n_words': 275}