<commit_before><!DOCTYPE html>

{% load staticfiles %}

<head>
    <meta name="viewport" content="width=device-width, initial-scale=1.0">
    <!-- TODO: host this stuff locally -->
    <link href='https://fonts.googleapis.com/css?family=Lato:300,400,900' rel='stylesheet' type='text/css'>
    <link href='https://fonts.googleapis.com/css?family=Open+Sans' rel='stylesheet' type='text/css'>

    <link href="//netdna.bootstrapcdn.com/font-awesome/4.0.3/css/font-awesome.css" rel="stylesheet">
    <link href="//netdna.bootstrapcdn.com/font-awesome/3.2.1/css/font-awesome.css" rel="stylesheet">

    <link href='{% static "js/libs/tablesorter-blue-theme/style.css" %}' rel='stylesheet' rel='stylesheet' type='text/css'>

    <script type='text/javascript' src='{% static "js/libs/jquery-1.10.2.min.js" %}'></script>
    <script type='text/javascript' src='{% static "js/libs/jquery.tablesorter.min.js" %}'></script>


    <script type='text/javascript' src='//maxcdn.bootstrapcdn.com/bootstrap/3.3.5/js/bootstrap.min.js'></script>

    <title>seqr</title>

    <link rel='stylesheet' type='text/css' href='{% static "css/bootstrap.min.css" %}' />
    <link rel='stylesheet' type='text/css' href='{% static "jquery-ui-1.10.3.custom.css" %}' />
    <link rel='stylesheet' type='text/css' href='/xstatic/style.css' />
    <link rel='stylesheet' type='text/css' href='{% static "css/typeahead.js-bootstrap.css" %}' />
    <!-- link href="//maxcdn.bootstrapcdn.com/bootstrap/3.3.5/css/bootstrap.min.css" rel="stylesheet" type="text/css" -->


	{% block extrahead %}
	{% endblock %}

</head>


<body>
    <div id="main">

        <div class="modal fade" id="independent-modal" role="dialog" tabindex="-1">
            <div class="modal-dialog">
                <div class="modal-content">
                    <div class="modal-header">
                        <button type="button" class="close back-button" data-dismiss="modal" aria-hidden="true">&times;</button><br>
                    </div>
                    <div class="modal-body" id="independent-modal-content"></div>
                </div>
            </div>
        </div>
        <div id="headerbar">
            <div class="container">
                <div class="row">
                    {% if user.is_authenticated %}
                        <div class="col-sm-4" id="logo-container">
                            <a href="/"><i>seqr</i></a>
                        </div>
                        <div class="col-sm-3" id="headerbar-right-links"></div>
                        <div class="col-sm-5" id="headerbar-right-links">
                            Logged in as <strong>{{ user.profile }}</strong> | <a href="/logout">Log out</a>
                        </div>
                    {% endif %}
                </div>
            </div>
        </div>
        {% if CONSTRUCTION_TEMPLATE %}
            <div id="underconstruction">
                <div class="container">
                    {% include CONSTRUCTION_TEMPLATE %}
                </div>
            </div>
        {% endif %}
        {% if messages %}
            <div id="messages">
                <div class="container">
                    {% for message in messages %}
                        <div class="message">{{ message }}</div>
                    {% endfor %}
                </div>
            </div>
        {% endif %}
        {% if new_page_url %}
            <div class="alert alert-danger centered" role="alert" style="margin-bottom: 0;border-radius: 0;">
                This page is deprecated. Click <a class="alert-link" href="{{ new_page_url }}">here</a> for the latest version
            </div>
        {% endif %}

        {% block content %}
        {% endblock %}
    </div>

    {% if user.is_authenticated %}
        <div id="footerbar">
   	    <div class="col-sm-1"></div>
            <div class="col-sm-5" style="padding:10px">For bug reports or feature requests please submit <a href="https://github.com/macarthur-lab/seqr/issues">github issues</a></div><commit_msg>add deprecation popup to old pages<commit_after><!DOCTYPE html>

{% load staticfiles %}

<head>
    <meta name="viewport" content="width=device-width, initial-scale=1.0">
    <!-- TODO: host this stuff locally -->
    <link href='https://fonts.googleapis.com/css?family=Lato:300,400,900' rel='stylesheet' type='text/css'>
    <link href='https://fonts.googleapis.com/css?family=Open+Sans' rel='stylesheet' type='text/css'>

    <link href="//netdna.bootstrapcdn.com/font-awesome/4.0.3/css/font-awesome.css" rel="stylesheet">
    <link href="//netdna.bootstrapcdn.com/font-awesome/3.2.1/css/font-awesome.css" rel="stylesheet">

    <link href='{% static "js/libs/tablesorter-blue-theme/style.css" %}' rel='stylesheet' rel='stylesheet' type='text/css'>

    <script type='text/javascript' src='{% static "js/libs/jquery-1.10.2.min.js" %}'></script>
    <script type='text/javascript' src='{% static "js/libs/jquery.tablesorter.min.js" %}'></script>


    <script type='text/javascript' src='//maxcdn.bootstrapcdn.com/bootstrap/3.3.5/js/bootstrap.min.js'></script>

    <title>seqr</title>

    <link rel='stylesheet' type='text/css' href='{% static "css/bootstrap.min.css" %}' />
    <link rel='stylesheet' type='text/css' href='{% static "jquery-ui-1.10.3.custom.css" %}' />
    <link rel='stylesheet' type='text/css' href='/xstatic/style.css' />
    <link rel='stylesheet' type='text/css' href='{% static "css/typeahead.js-bootstrap.css" %}' />
    <!-- link href="//maxcdn.bootstrapcdn.com/bootstrap/3.3.5/css/bootstrap.min.css" rel="stylesheet" type="text/css" -->

    <script>
        $(document).ready(
          function() {
            $('#deprecated-modal').modal('show')
          }
        );
    </script>


	{% block extrahead %}
	{% endblock %}

</head>


<body>
    <div id="main">

        <div class="modal fade" id="deprecated-modal" role="dialog" tabindex="-1">
            <div class="modal-dialog">
                <div class="modal-content panel-danger">
                    <div class="modal-header panel-heading">
                        <h2 style="display: inline-block; border: none;">This page is deprecated, and will be removed on December 1, 2019.</h2>
                        <button type="button" class="close back-button" data-dismiss="modal" aria-hidden="true">&times;</button><br>
                    </div>
                    <div class="modal-body" id="deprecated-modal-content">
                        {% if new_page_url %}
                            Click <b><a style="color: #b94a48;" href="{{ new_page_url }}">here</a></b> to access the current version of this page.
                        {% endif %}
                        If there is content you still need on this page, please contact the seqr team.
                    </div>
                </div>
            </div>
        </div>
        <div id="headerbar">
            <div class="container">
                <div class="row">
                    {% if user.is_authenticated %}
                        <div class="col-sm-4" id="logo-container">
                            <a href="/"><i>seqr</i></a>
                        </div>
                        <div class="col-sm-3" id="headerbar-right-links"></div>
                        <div class="col-sm-5" id="headerbar-right-links">
                            Logged in as <strong>{{ user.profile }}</strong> | <a href="/logout">Log out</a>
                        </div>
                    {% endif %}
                </div>
            </div>
        </div>
        {% if CONSTRUCTION_TEMPLATE %}
            <div id="underconstruction">
                <div class="container">
                    {% include CONSTRUCTION_TEMPLATE %}
                </div>
            </div>
        {% endif %}
        {% if messages %}
            <div id="messages">
                <div class="container">
                    {% for message in messages %}
                        <div class="message">{{ message }}</div>
                    {% endfor %}
                </div>
            </div>
        {% endif %}
        {% block content %}
        {% endblock %}
    </div>

    {% if user.is_authenticated %}
        <div id="footerbar">
   	    <div class="col-sm-1"></div>
            <div class="col-sm-5" style="padding:10px">For bug reports or feature requests please submit <a href="https://github.com/macarthur-lab/seqr/issues">github issues</a></div>
{'fraction_non_alphanumeric': 0.1772931974401517, 'fraction_numerical': 0.010784546100971794, 'mean_word_length': 1.9631320224719102, 'pattern_counts': {'":': 0, '<': 167, '<?xml version=': 0, '>': 167, 'https://': 6, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1668256', 'n_tokens_mistral': 2684, 'n_tokens_neox': 2444, 'n_words': 477}