<commit_before>[![Build Status](https://travis-ci.org/ajnebro/pyMSAScoring.svg?branch=master)](https://travis-ci.org/ajnebro/pyMSAScoring)

## PyMSA: Scoring Multiple Sequence Alignments with Python

PyMSA is an open source software tool aimed at providing a number of scores for
multiple sequence alignment (MSA) problems. This project is a development of the students of the
third course students of the degree on Bioinformatics of the E.T.S. de Ingeniería Informática 
of the University of Málaga.

## Requirements
PyMSA has been developed with Python 3.6.0 :: [Anaconda](https://www.continuum.io) 4.3.0 (x86_64)

## Score
The scores that are currently available  are:
* Sum of pairs
* Star
* Minimum entropy
* Percentage of non-gaps code


## Downloading
To download PyMSA just clone the Git repository hosted in GitHub:
```
git clone https://github.com/ajnebro/pyMSAScoring.git
```

## Authors
* <NAME> - Project Manager
* <NAME> - Developer of the Star score
* <NAME> - Developer of the Star code
* <NAME> - Developer of the Sum of Pairs score
* <NAME> - Developer of the Sum of Pairs score
* <NAME> - Developer of the Entropy score
* <NAME> - Developer of the Entropy score
* <NAME> - Developer of the of Non-Gaps score
* <NAME> - Technology support

## License
This project is licensed under the terms of the GNU - see the [LICENSE](https://github.com/ajnebro/pyMSAScoring/blob/master/LICENSE) file for details.<commit_msg>README update<commit_after>[![Build Status](https://travis-ci.org/ajnebro/pyMSAScoring.svg?branch=master)](https://travis-ci.org/ajnebro/pyMSAScoring)

## PyMSA: Scoring Multiple Sequence Alignments with Python

PyMSA is an open source software tool aimed at providing a number of scores for
multiple sequence alignment (MSA) problems. This project is a development of the students of the
third course students of the degree on Bioinformatics of the E.T.S. de Ingeniería Informática 
of the University of Málaga.

## Requirements
PyMSA has been developed with Python 3.6.0 :: [Anaconda](https://www.continuum.io) 4.3.0 (x86_64)

## Score
The scores that are currently available  are:
* Sum of pairs
* Star
* Minimum entropy
* Percentage of non-gaps code


## Downloading
To download PyMSA just clone the Git repository hosted in GitHub:
```
git clone https://github.com/ajnebro/pyMSAScoring.git
```
```
python setup.py install
```
Alternatively, you can install with pip:
```
pip install pyMSAScoring
```

## Authors
* <NAME> - Project Manager
* <NAME> - Developer of the Star score
* <NAME> - Developer of the Star code
* <NAME> - Developer of the Sum of Pairs score
* <NAME> - Developer of the Sum of Pairs score
* <NAME> - Developer of the Entropy score
* <NAME> - Developer of the Entropy score
* <NAME> - Developer of the of Non-Gaps score
* <NAME> - Technology support

## License
This project is licensed under the terms of the MIT - see the [LICENSE](https://github.com/ajnebro/pyMSAScoring/blob/master/LICENSE) file for details.
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