<commit_before># not installable via pip
roadrunner
antimony
phrasedml
sbml2matlab

# installable via pip
python-libsbml
python-libsedml
ipywidgets
bioservices
matplotlib
numpy
pygraphviz
ipython
jinja2
pandas

# for testing
nose

# packed with Tellurium, but not required for tellurium
#   tePlugins
#   pySBOL
#   py-control ?
#   simplesbml

# the following python standard library models are used (no install necessary)
#   os, sys, re, zipfile, time, collections, httplib,
#   tempfile, warnings, StringIO
<commit_msg>update requirements.txt - packages now avail. via pip<commit_after># installable via pip
libroadrunner
rrplugins
tesbml
tesedml
tecombine
antimony
phrasedml
sbml2matlab
ipywidgets
bioservices
matplotlib
numpy
pygraphviz
ipython
jinja2
pandas

# for testing
nose

# packed with Tellurium, but not required for tellurium
#   tePlugins
#   pySBOL
#   py-control ?
#   simplesbml

# the following python standard library models are used (no install necessary)
#   os, sys, re, zipfile, time, collections, httplib,
#   tempfile, warnings, StringIO

{'fraction_non_alphanumeric': 0.05628517823639775, 'fraction_numerical': 0.00375234521575985, 'mean_word_length': 4.895027624309392, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5476236', 'n_tokens_mistral': 372, 'n_tokens_neox': 364, 'n_words': 120}