<commit_before>from setuptools import setup, find_packages
from glob import glob

__author__ = 'shafferm'
__version__ = '0.1.1'


setup(
    name="dada2_qiime1",
    version=__version__,
    install_requires=['rpy2 ==2.8', 'biom-format', 'numpy', 'qiime'],
    scripts=glob("scripts/*.py"),
    packages=find_packages(),
    description="Using DADA2 with qiime 1",
    author="<NAME>",
    author_email='<EMAIL>',
    package_data={'': ['*.r', '*.R']},
    include_package_data=True,
    url="https://github.com/shafferm/dada2_qiime1/",
    download_url="https://github.com/shafferm/dada2_qiime1/tarball/%s" % __version__
)<commit_msg>Use rpy2 version available through conda (2.8.5)<commit_after>from setuptools import setup, find_packages
from glob import glob

__author__ = 'shafferm'
__version__ = '0.1.1'


setup(
    name="dada2_qiime1",
    version=__version__,
    install_requires=['rpy2 ==2.8.5', 'biom-format', 'numpy', 'qiime'],
    scripts=glob("scripts/*.py"),
    packages=find_packages(),
    description="Using DADA2 with qiime 1",
    author="<NAME>",
    author_email='<EMAIL>',
    package_data={'': ['*.r', '*.R']},
    include_package_data=True,
    url="https://github.com/shafferm/dada2_qiime1/",
    download_url="https://github.com/shafferm/dada2_qiime1/tarball/%s" % __version__
)
{'fraction_non_alphanumeric': 0.17521040550879877, 'fraction_numerical': 0.0252486610558531, 'mean_word_length': 4.589743589743589, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 7, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2025396', 'n_tokens_mistral': 498, 'n_tokens_neox': 481, 'n_words': 80}