<commit_before># HMS RC modules
# 2017-06-29
#
# Check loaded modules:
# `module list`
#
# Unload everything:
# `module load null`
#
# Check available modules:
# - `module avail`
# - `module avail stats/R`
if [[ $HPC == "HMS RC O2" ]]; then
    module load \
        bcl2fastq/2.18.0.12 \
        boost/1.62.0 \
        cairo/1.14.6 \
        cmake/3.7.1 \
        fontconfig/2.12.1 \
        freetype/2.7 \
        gcc/6.2.0 \
        hdf5/1.10.1 \
        ImageMagick/6.9.1.10 \
        openblas/0.2.19 \
        python/3.6.0 \
        R/3.4.1 \
        sratoolkit/2.8.1
elif [[ $HPC == "HMS RC Orchestra" ]]; then
    module load \
        dev/boost-1.57.0 \
        dev/compiler/cmake-3.3.1 \
        dev/compiler/gcc-4.8.5 \
        dev/lapack \
        dev/leiningen/stable-feb032016 \
        dev/openblas/0.2.14 \
        dev/python/3.4.2 \
        dev/ruby/2.2.4 \
        image/imageMagick/6.9.1 \
        seq/bcl2fastq/2.17.1.14 \
        seq/cellranger/2.0.0 \
        seq/sratoolkit/2.8.1-3 \
        stats/R/3.3.1 \
        utils/cairo/1.14.2 \
        utils/fontconfig/2.11.1 \
        utils/freetype/2.6 \
        utils/hdf5/1.8.16
fi<commit_msg>Update 01_hms_rc.sh<commit_after># HMS RC modules
# 2017-06-29
#
# Check loaded modules:
# `module list`
#
# Unload everything:
# `module load null`
#
# Check available modules:
# - `module avail`
# - `module avail stats/R`
if [[ $HPC == "HMS RC O2" ]]; then
    module load \
        bcl2fastq/2.18.0.12 \
        boost/1.62.0 \
        cairo/1.14.6 \
        cmake/3.7.1 \
        fontconfig/2.12.1 \
        freetype/2.7 \
        gcc/6.2.0 \
        hdf5/1.10.1 \
        ImageMagick/6.9.1.10 \
        openblas/0.2.19 \
        python/3.6.0 \
        sratoolkit/2.8.1
elif [[ $HPC == "HMS RC Orchestra" ]]; then
    module load \
        dev/boost-1.57.0 \
        dev/compiler/cmake-3.3.1 \
        dev/compiler/gcc-4.8.5 \
        dev/lapack \
        dev/leiningen/stable-feb032016 \
        dev/openblas/0.2.14 \
        dev/python/3.4.2 \
        dev/ruby/2.2.4 \
        image/imageMagick/6.9.1 \
        seq/bcl2fastq/2.17.1.14 \
        seq/cellranger/2.0.0 \
        seq/sratoolkit/2.8.1-3 \
        stats/R/3.3.1 \
        utils/cairo/1.14.2 \
        utils/fontconfig/2.11.1 \
        utils/freetype/2.6 \
        utils/hdf5/1.8.16
fi
{'fraction_non_alphanumeric': 0.16133217993079585, 'fraction_numerical': 0.10337370242214533, 'mean_word_length': 1.3014925373134327, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 6, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '782160', 'n_tokens_mistral': 1051, 'n_tokens_neox': 986, 'n_words': 139}