<commit_before>#!/usr/bin/env python
from setuptools import setup, find_packages
import os
import sys

sys.path.insert(0,'TASSELpy')
#import release
#import TASSELpy
sys.path.pop(0)
#version = TASSELpy.__version__
packages = ['TASSELpy',
            'TASSELpy.java',
            'TASSELpy.java.lang',
            'TASSELpy.java.lang.reflect',
            'TASSELpy.java.util',
            'TASSELpy.data',
            'TASSELpy.lib',
            'TASSELpy.net',
            'TASSELpy.net.maizegenetics',
            'TASSELpy.net.maizegenetics.analysis.distance',
            'TASSELpy.net.maizegenetics.analysis.popgen',
            'TASSELpy.net.maizegenetics.dna.map',
            'TASSELpy.net.maizegenetics.dna.snp',
            'TASSELpy.net.maizegenetics.dna.snp.depth',
            #'TASSELpy.net.maizegenetics.dna.snp.genotypecall',
            'TASSELpy.net.maizegenetics.dna.snp.score',
            'TASSELpy.net.maizegenetics.dna.tag',
            'TASSELpy.net.maizegenetics.matrixalgebra',
            'TASSELpy.net.maizegenetics.matrixalgebra.decomposition',
            'TASSELpy.net.maizegenetics.matrixalgebra.Matrix',
            'TASSELpy.net.maizegenetics.stats',
            'TASSELpy.net.maizegenetics.stats.statistics',
            'TASSELpy.net.maizegenetics.taxa',
            'TASSELpy.net.maizegenetics.taxa.distance',
            'TASSELpy.net.maizegenetics.trait',
            'TASSELpy.net.maizegenetics.util',
            'TASSELpy.utils',
            'TASSELpy.test',
            'TASSELpy.test.java',
            'TASSELpy.test.java.lang',
            'TASSELpy.test.java.util',
            'TASSELpy.test.net',
            'TASSELpy.test.net.maizegenetics',
            'TASSELpy.test.net.maizegenetics.analysis.distance',
            'TASSELpy.test.net.maizegenetics.analysis.popgen',
            'TASSELpy.test.net.maizegenetics.dna.snp',
            'TASSELpy.test.net.maizegenetics.dna.tag',
            'TASSELpy.test.net.maizegenetics.matrixalgebra',
            'TASSELpy.test.net.maizegenetics.matrixalgebra.Matrix',
            'TASSELpy.test.net.maizegenetics.matrixalgebra.decomposition',
            'TASSELpy.test.net.maizegenetics.stats',<commit_msg>Update setup.py to get a couple directories included<commit_after>#!/usr/bin/env python
from setuptools import setup, find_packages
import os
import sys

sys.path.insert(0,'TASSELpy')
#import release
#import TASSELpy
sys.path.pop(0)
#version = TASSELpy.__version__
packages = ['TASSELpy',
            'TASSELpy.java',
            'TASSELpy.java.lang',
            'TASSELpy.java.lang.reflect',
            'TASSELpy.java.util',
            'TASSELpy.data',
            'TASSELpy.lib',
            'TASSELpy.net',
            'TASSELpy.net.maizegenetics',
            'TASSELpy.net.maizegenetics.analysis',
            'TASSELpy.net.maizegenetics.analysis.distance',
            'TASSELpy.net.maizegenetics.analysis.popgen',
            'TASSELpy.net.maizegenetics.dna',
            'TASSELpy.net.maizegenetics.dna.map',
            'TASSELpy.net.maizegenetics.dna.snp',
            'TASSELpy.net.maizegenetics.dna.snp.depth',
            #'TASSELpy.net.maizegenetics.dna.snp.genotypecall',
            'TASSELpy.net.maizegenetics.dna.snp.score',
            'TASSELpy.net.maizegenetics.dna.tag',
            'TASSELpy.net.maizegenetics.matrixalgebra',
            'TASSELpy.net.maizegenetics.matrixalgebra.decomposition',
            'TASSELpy.net.maizegenetics.matrixalgebra.Matrix',
            'TASSELpy.net.maizegenetics.stats',
            'TASSELpy.net.maizegenetics.stats.statistics',
            'TASSELpy.net.maizegenetics.taxa',
            'TASSELpy.net.maizegenetics.taxa.distance',
            'TASSELpy.net.maizegenetics.trait',
            'TASSELpy.net.maizegenetics.util',
            'TASSELpy.utils',
            'TASSELpy.test',
            'TASSELpy.test.java',
            'TASSELpy.test.java.lang',
            'TASSELpy.test.java.util',
            'TASSELpy.test.net',
            'TASSELpy.test.net.maizegenetics',
            'TASSELpy.test.net.maizegenetics.analysis',
            'TASSELpy.test.net.maizegenetics.analysis.distance',
            'TASSELpy.test.net.maizegenetics.analysis.popgen',
            'TASSELpy.test.net.maizegnetics.dna',
            'TASSELpy.test.net.maizegenetics.dna.snp',
            'TASSELpy.test.net.maizegenetics.dna.tag',
            'TASSELpy.test.net.maizegenetics.matrixalgebra',
            'TASSELpy.test.net.maizegenetics.matrixalgebra.Matrix',
            'TASSELpy.test.net.maizegenetics.matrixalgebra.decomposition',
            'TASSELpy.test.net.maizegenetics.stats',
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{'dir': 'git-commits-cleaned', 'id': '1704342', 'n_tokens_mistral': 1668, 'n_tokens_neox': 1652, 'n_words': 132}