<commit_before>import os

DB_HOST = 'exac-dev'
DB_PORT = 3307 
DB_USER = 'root'

DATA_DIR_PREFIX = '/humgen/atgu1/fs03/weisburd/exac_readviz_scripts_data' 
BIN_DIR_PREFIX = os.path.join(DATA_DIR_PREFIX, 'bin') 
BAM_OUTPUT_DIR = "/broad/hptmp/exac_readviz_backend2/"


# how many samples to show per het, hom-alt or hemizygous variant in the exac browser.
MAX_SAMPLES_TO_SHOW_PER_VARIANT = 5

# in ExAC v3 the max ref allele is 325bp long, and max alt allele is 365bp long, so use 500 to be safe.
MAX_ALLELE_SIZE = 500  # nucleotides

# in the ExAC v3 info table, the longest sample id is 36 chars long
MAX_VCF_SAMPLE_ID_SIZE = 50<commit_msg>Change temp dir<commit_after>import os

DB_HOST = 'exac-dev'
DB_PORT = 3307 
DB_USER = 'root'

DATA_DIR_PREFIX = '/humgen/atgu1/fs03/weisburd/exac_readviz_scripts_data' 
BIN_DIR_PREFIX = os.path.join(DATA_DIR_PREFIX, 'bin') 
BAM_OUTPUT_DIR = "/broad/hptmp/exac_readviz_backend/"


# how many samples to show per het, hom-alt or hemizygous variant in the exac browser.
MAX_SAMPLES_TO_SHOW_PER_VARIANT = 5

# in ExAC v3 the max ref allele is 325bp long, and max alt allele is 365bp long, so use 500 to be safe.
MAX_ALLELE_SIZE = 500  # nucleotides

# in the ExAC v3 info table, the longest sample id is 36 chars long
MAX_VCF_SAMPLE_ID_SIZE = 50
{'fraction_non_alphanumeric': 0.07482462977396727, 'fraction_numerical': 0.041309431021044424, 'mean_word_length': 4.706666666666667, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '764492', 'n_tokens_mistral': 548, 'n_tokens_neox': 495, 'n_words': 149}