<commit_before>"""
Brie - Bayesian regression for isoform estimate
See: http://brie-rna.sourceforge.net
"""

# Always prefer setuptools over distutils
from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import open
from os import path

here = path.abspath(path.dirname(__file__))

# Set __version__ for the project.
exec(open("./brie/version.py").read())

# Get the long description from the relevant file
with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
    long_description = f.read()

reqs = ['numpy>=1.9.0', 'pysam>=0.9.0']

setup(
    name='brie',

    # Versions should comply with PEP440.  For a discussion on single-sourcing
    # the version across setup.py and the project code, see
    # https://packaging.python.org/en/latest/single_source_version.html
    version=__version__,

    description='BRIE: Bayesian regression for isoform estimate',
    long_description=long_description,

    # The project's main homepage.
    url='http://brie-rna.sourceforge.net',

    # Author details
    author='<NAME>',
    author_email='<EMAIL>',

    # Choose your license
    license='Apache-2.0',

    # What does your project relate to?
    keywords=['splicing isoform estimate', 'Bayesian regression',
              'single cell RNA-seq', 'Markov chain Monte Carlo'],

    # You can just specify the packages manually here if your project is
    # simple. Or you can use find_packages().
    packages=find_packages(),

    entry_points={
        'console_scripts': [
            'brie = brie.brie:main',
            'brie-diff = brie.brie_diff:main',
        ],
    },

    python_requires='>=3.5',

    # List run-time dependencies here.  These will be installed by pip when
    # your project is installed. For an analysis of "install_requires" vs pip's
    # requirements files see:
    # https://packaging.python.org/en/latest/requirements.html
<commit_msg>turn off requirement of python >= 3.5<commit_after>"""
Brie - Bayesian regression for isoform estimate
See: http://brie-rna.sourceforge.net
"""

# Always prefer setuptools over distutils
from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import open
from os import path

here = path.abspath(path.dirname(__file__))

# Set __version__ for the project.
exec(open("./brie/version.py").read())

# Get the long description from the relevant file
with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
    long_description = f.read()

reqs = ['numpy>=1.9.0', 'pysam>=0.9.0']

setup(
    name='brie',

    # Versions should comply with PEP440.  For a discussion on single-sourcing
    # the version across setup.py and the project code, see
    # https://packaging.python.org/en/latest/single_source_version.html
    version=__version__,

    description='BRIE: Bayesian regression for isoform estimate',
    long_description=long_description,

    # The project's main homepage.
    url='http://brie-rna.sourceforge.net',

    # Author details
    author='<NAME>',
    author_email='<EMAIL>',

    # Choose your license
    license='Apache-2.0',

    # What does your project relate to?
    keywords=['splicing isoform estimate', 'Bayesian regression',
              'single cell RNA-seq', 'Markov chain Monte Carlo'],

    # You can just specify the packages manually here if your project is
    # simple. Or you can use find_packages().
    packages=find_packages(),

    entry_points={
        'console_scripts': [
            'brie = brie.brie:main',
            'brie-diff = brie.brie_diff:main',
        ],
    },

    # python_requires='>=3.5',

    # List run-time dependencies here.  These will be installed by pip when
    # your project is installed. For an analysis of "install_requires" vs pip's
    # requirements files see:
    # https://packaging.python.org/en/latest/requirements.html

{'fraction_non_alphanumeric': 0.11456713322965267, 'fraction_numerical': 0.007776049766718507, 'mean_word_length': 3.36045197740113, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 14, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1229553', 'n_tokens_mistral': 1201, 'n_tokens_neox': 1139, 'n_words': 349}