<commit_before>{% set version = "3.4.3" %}

package:
  name: hicexplorer
  version: '{{ version }}'

source:
  url: https://github.com/deeptools/HiCExplorer/archive/{{ version }}.tar.gz
  sha256: 5f2755cc09971c4e9d59740f3637a362e12690cd2dae29b2b58b12bc6ca8eb23

build:
  number: 1
  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
  noarch: python

requirements:
  host:
    - python >=3.5
    - pip
  run:
    - python >=3.5
    - numpy >=1.18
    - scipy >=1.3
    - matplotlib-base ==3.1.*
    - pysam
    - intervaltree
    - biopython
    - pytables
    - pybigwig
    - pandas ==0.25.*
    - jinja2
    - cooler >=0.8.5
    - future
    - unidecode
    - hicmatrix >=12
    - pygenometracks >=3.0
    - hic2cool >=0.8.2
    - fit_nbinom >=1.1
    - krbalancing >=0.0.5
    - psutil
    - pybedtools >=0.8
    - tqdm >=4.20

test:
  imports:
    - hicexplorer
  commands:
    - hicFindRestSite --version
    - hicAggregateContacts --version
    - hicBuildMatrix --version
    - hicCorrectMatrix --version
    - hicCorrelate --version
    - hicDetectLoops --version
    - hicFindTADs --version
    - hicMergeMatrixBins --version
    - hicPlotMatrix --version
    - hicPlotDistVsCounts --version
    - hicPlotTADs --version
    - hicSumMatrices --version
    - hicInfo --version
    - hicConvertFormat --version
    - hicAdjustMatrix --version
    - hicNormalize --version
    - hicAverageRegions --version
    - hicPlotAverageRegions --version
    - hicMergeLoops --version
    - hicValidateLocations --version
    - hicCompartmentalization --version
    - chicQualityControl --version
    - chicViewpointBackgroundModel --version
    - chicViewpoint --version
    - chicSignificantInteractions --version
    - chicAggregateStatistic --version
    - chicDifferentialTest --version
    - chicPlotViewpoint --version
    - hicPlotSVL --version
    - hicQuickQC --version

about:
  home: https://github.com/deeptools/HiCExplorer
  license: GPL3
  summary: Set of programs to process, analyze and visualize Hi-C and capture Hi-C data

extra:
  identifiers:
    - doi:10.1093/nar/gky504
    - doi:10.1093/nar/gkaa220<commit_msg>Update hicexplorer to 3.5 (#23123)<commit_after>{% set version = "3.5" %}

package:
  name: hicexplorer
  version: '{{ version }}'

source:
  url: https://github.com/deeptools/HiCExplorer/archive/{{ version }}.tar.gz
  sha256: dc741ac16713da70da5e5cbc0b341bbca9f5900a7beefff9743c1bbbef103ffc

build:
  number: 0
  script: "{{ PYTHON }} -m pip install . --no-deps -vv"
  noarch: python

requirements:
  host:
    - python >=3.5
    - pip
  run:
    - python >=3.5
    - numpy >=1.18
    - scipy >=1.3
    - matplotlib-base >=3.1.*
    - ipykernel >=5.3.0
    - pysam
    - intervaltree
    - biopython
    - pytables
    - pybigwig
    - pandas >=0.25.*
    - jinja2
    - cooler >=0.8.5
    - future
    - unidecode
    - hicmatrix >=13
    - cooler
    - pygenometracks >=3.2
    - hic2cool >=0.8.3
    - fit_nbinom >=1.1
    - krbalancing >=0.0.5
    - psutil
    - pybedtools >=0.8
    - tqdm >=4.20
    - hyperopt >=0.2.4
    - python-graphviz >=0.14

test:
  imports:
    - hicexplorer
  commands:
    - hicFindRestSite --version
    - hicAggregateContacts --version
    - hicBuildMatrix --version
    - hicCorrectMatrix --version
    - hicCorrelate --version
    - hicDetectLoops --version
    - hicFindTADs --version
    - hicMergeMatrixBins --version
    - hicPlotMatrix --version
    - hicPlotDistVsCounts --version
    - hicPlotTADs --version
    - hicSumMatrices --version
    - hicInfo --version
    - hicConvertFormat --version
    - hicAdjustMatrix --version
    - hicNormalize --version
    - hicAverageRegions --version
    - hicPlotAverageRegions --version
    - hicMergeLoops --version
    - hicValidateLocations --version
    - hicCompartmentalization --version
    - chicQualityControl --version
    - chicViewpointBackgroundModel --version
    - chicViewpoint --version
    - chicSignificantInteractions --version
    - chicAggregateStatistic --version
    - chicDifferentialTest --version
    - chicPlotViewpoint --version
    - hicPlotSVL --version
    - hicQuickQC --version
    - hicCompareMatrices --version
    - hicPCA --version
    - hicTransform --version
    - hicPlotViewpoint --version
    - hicHyperoptDetectLoops --version
    - hicHyperoptDetectLoopsHiCCUPS --version
    - hicDifferentialTAD --version
 
about:
  home: https://github.com/deeptools/HiCExplorer
  license: GPL3
  summary: Set of programs to process, analyze and visualize Hi-C and capture Hi-C data

extra:
  identifiers:
    - doi:10.1093/nar/gky504
    - doi:10.1093/nar/gkaa220
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