<commit_before>[Workflow],,,,,,,,,,,,,,
Id:,bika_analysis_workflow,,,,,,,,,,,,,
Title:,Bika Analysis Workflow,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Initial state:,sample_registered,,,,,,,,,,,,,
Type:,Workflow,,,,,,,,,,,,,
State variable:,review_state,,,,,,,,,,,,,
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,attachment_due,,,,,,,,,,,,,
Title:,Attachment Outstanding,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"attach, retract",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,not_requested,,,,,,,,,,,,,
Title:,Not requested,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,verify,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,Y,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,Y,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,published,,,,,,,,,,,,,
Title:,Published,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,publish,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,Y,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,retracted,,,,,,,,,,,,,
Title:,Retracted,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,Y,Y,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,sample_due,,,,,,,,,,,,,
Title:,Sample Due,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"import, receive, submit",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,Y,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,N,N,Y,N,N,N,N,N,Y,Y,N,Y,N,N
BIKA: Edit Results,Y,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Receive Sample,Y,N,Y,N,N,N,N,N,Y,Y,N,N,N,N
BIKA: View Results,Y,N,Y,N,N,N,N,N,Y,Y,N,Y,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,sample_received,,,,,,,,,,,,,
Title:,Received,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,submit,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,Y,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,Y,N,N,N,N,Y,N,Y,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,sample_registered,,,,,,,,,,,,,
Title:,Registered,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"sampling_workflow, no_sampling_workflow",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,sampled,,,,,,,,,,,,,
Title:,Sampled,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"auto_preservation_required, auto_no_preservation_required, to_be_preserved, sample_due",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,to_be_preserved,,,,,,,,,,,,,
Title:,To Be Preserved,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,preserve,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,Y,Y,N,N,N,N
BIKA: Edit Field Results,N,N,Y,N,N,N,N,N,Y,Y,N,Y,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Manage Invoices,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Preserve Sample,N,N,Y,N,N,N,N,N,N,Y,Y,N,N,N
BIKA: Results not requested,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Sample Sample,N,N,N,N,N,N,N,N,N,N,N,N,N,N
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,to_be_sampled,,,,,,,,,,,,,
Title:,To Be Sampled,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,sample,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,Y,N,N,N,N,Y,Y,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Sample Sample,N,N,Y,N,N,N,N,N,N,Y,N,Y,N,N
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,to_be_verified,,,,,,,,,,,,,
Title:,To be verified,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"verify, retract, revert",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,Y,Y,Y
Review portal content,N,N,Y,N,N,N,N,Y,Y,Y,N,N,N,N
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,verified,,,,,,,,,,,,,
Title:,Verified,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,publish,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,Y,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[Transition],,,,,,,,,,,,,,
Id:,attach,,,,,,,,,,,,,
Title:,Add attachment,,,,,,,,,,,,,
Description:,Add attachment,,,,,,,,,,,,,
Target state:,to_be_verified,,,,,,,,,,,,,
URL:,workflow_action?workflow_action=submit,,,,,,,,,,,,,<commit_msg>Update analysis/'Review portal content' permission to reflect all roles who have 'view results'.<commit_after>[Workflow],,,,,,,,,,,,,,
Id:,bika_analysis_workflow,,,,,,,,,,,,,
Title:,Bika Analysis Workflow,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Initial state:,sample_registered,,,,,,,,,,,,,
Type:,Workflow,,,,,,,,,,,,,
State variable:,review_state,,,,,,,,,,,,,
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,attachment_due,,,,,,,,,,,,,
Title:,Attachment Outstanding,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"attach, retract",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,not_requested,,,,,,,,,,,,,
Title:,Not requested,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,verify,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,Y,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,Y,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,published,,,,,,,,,,,,,
Title:,Published,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,publish,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,Y,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,retracted,,,,,,,,,,,,,
Title:,Retracted,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,Y,Y,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,sample_due,,,,,,,,,,,,,
Title:,Sample Due,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"import, receive, submit",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,Y,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,N,N,Y,N,N,N,N,N,Y,Y,N,Y,N,N
BIKA: Edit Results,Y,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Receive Sample,Y,N,Y,N,N,N,N,N,Y,Y,N,N,N,N
BIKA: View Results,Y,N,Y,N,N,N,N,N,Y,Y,N,Y,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,sample_received,,,,,,,,,,,,,
Title:,Received,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,submit,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,Y,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,Y,N,N,N,N,Y,N,Y,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,sample_registered,,,,,,,,,,,,,
Title:,Registered,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"sampling_workflow, no_sampling_workflow",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,sampled,,,,,,,,,,,,,
Title:,Sampled,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"auto_preservation_required, auto_no_preservation_required, to_be_preserved, sample_due",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,to_be_preserved,,,,,,,,,,,,,
Title:,To Be Preserved,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,preserve,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,Y,Y,N,N,N,N
BIKA: Edit Field Results,N,N,Y,N,N,N,N,N,Y,Y,N,Y,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Manage Invoices,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Preserve Sample,N,N,Y,N,N,N,N,N,N,Y,Y,N,N,N
BIKA: Results not requested,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Sample Sample,N,N,N,N,N,N,N,N,N,N,N,N,N,N
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,to_be_sampled,,,,,,,,,,,,,
Title:,To Be Sampled,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,sample,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,Y,N,N,N,N,Y,Y,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Sample Sample,N,N,Y,N,N,N,N,N,N,Y,N,Y,N,N
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,to_be_verified,,,,,,,,,,,,,
Title:,To be verified,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,"verify, retract, revert",,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,Y,N,N,N,N,N,N,Y,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,N,N,N,N,Y,Y,Y,N,Y,Y,Y
Review portal content,N,N,Y,N,N,N,N,Y,Y,Y,N,Y,Y,Y
,,,,,,,,,,,,,,
[State],,,,,,,,,,,,,,
Id:,verified,,,,,,,,,,,,,
Title:,Verified,,,,,,,,,,,,,
Description:,,,,,,,,,,,,,,
Transitions,publish,,,,,,,,,,,,,
Permissions,Acquire,Anonymous,Manager,Owner,Reader,Editor,Contributor,Analyst,LabClerk,LabManager,Preserver,Sampler,Verifier,RegulatoryInspector
BIKA: Cancel and reinstate,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Field Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: Edit Results,N,N,N,N,N,N,N,N,N,N,N,N,N,N
BIKA: View Results,N,N,Y,Y,N,N,N,Y,Y,Y,N,N,N,Y
,,,,,,,,,,,,,,
[Transition],,,,,,,,,,,,,,
Id:,attach,,,,,,,,,,,,,
Title:,Add attachment,,,,,,,,,,,,,
Description:,Add attachment,,,,,,,,,,,,,
Target state:,to_be_verified,,,,,,,,,,,,,
URL:,workflow_action?workflow_action=submit,,,,,,,,,,,,,
{'fraction_non_alphanumeric': 0.3233722243131351, 'fraction_numerical': 0.0, 'mean_word_length': 22.267950963222418, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6440053', 'n_tokens_mistral': 5512, 'n_tokens_neox': 5283, 'n_words': 543}