<commit_before># configuration file that determines which fields are set in the kegg converted
#
# <ORGANISM ABBR>.taxonId
# <ORGANISM ABBR>.identifier = which gene field to set
# if identifier is not set, primaryIdentifier will be used
#
# NOTE: this is only a configuration file.  to actually load organisms, add them to the KEGG entry in project.xml
# See http://www.genome.jp/kegg/catalog/org_list.html for list of organism abbreviations


# melanogaster
dme.taxonId = 7227
dme.identifier = primaryIdentifier

# human
hsa.taxonId = 9606
hsa.identifier = secondaryIdentifier

# mouse
mmu.taxonId = 10090
mmu.identifier = ncbiGeneNumber

# rat
rno.taxonId = 10116

# yeast
sce.taxonId = 4932

# zebrafish
dre.taxonId = 7955

# worm
cel.taxonId = 6239<commit_msg>put mouse ID in primary identifier. currently this is the NCBI gene identifier, needs to be MGI id instead<commit_after># configuration file that determines which fields are set in the kegg converted
#
# <ORGANISM ABBR>.taxonId
# <ORGANISM ABBR>.identifier = which gene field to set
# if identifier is not set, primaryIdentifier will be used
#
# NOTE: this is only a configuration file.  to actually load organisms, add them to the KEGG entry in project.xml
# See http://www.genome.jp/kegg/catalog/org_list.html for list of organism abbreviations


# melanogaster
dme.taxonId = 7227
dme.identifier = primaryIdentifier

# human
hsa.taxonId = 9606
hsa.identifier = secondaryIdentifier

# mouse
mmu.taxonId = 10090
mmu.identifier = primaryIdentifier

# rat
rno.taxonId = 10116

# yeast
sce.taxonId = 4932

# zebrafish
dre.taxonId = 7955

# worm
cel.taxonId = 6239
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