<commit_before>
from setuptools import setup, find_packages

setup(name="ricopili_bioinformatics",
      version="0.1",
      description="Prototype for snakemake-based Ricopili postimputation pipeline.",
      url="https://github.com/vtrubets/ricopili_bioinformatics",
      author="<NAME>",
      author_email='',
      license="MIT",
      packages=["ricopili_bioinformatics"],
      install_requires=["snakemake"],
      scripts=["src/snakemake/postimputation"],
      package_data={"ricopili_bioinformatics": ["src/snakemake/config.yaml"],
                    "ricopili_bioinformatics": ["src/snakemake/broad_uger_config.yaml"],
                    "ricopili_bioinformatics": ["resources/magma_linux/magma"],
                    "ricopili_bioinformatics": ["resources/magma_linux/reference_data/NCBI37.3.gene.loc"],
                    "ricopili_bioinformatics": ["src/snakemake/Snakefile"]},
      zip_safe=False)<commit_msg>Refer to data resources as living under separate packages. The directory structure doesn't match setuptools very well.<commit_after>
from setuptools import setup, find_packages

setup(name="ricopili_bioinformatics",
      version="0.1",
      description="Prototype for snakemake-based Ricopili postimputation pipeline.",
      url="https://github.com/vtrubets/ricopili_bioinformatics",
      author="<NAME>",
      author_email='',
      license="MIT",
      packages=["ricopili_bioinformatics", "resources", "src"],
      install_requires=["snakemake"],
      scripts=["src/snakemake/postimputation"],
      package_data={"src": ["snakemake/config.yaml"],
                    "src": ["snakemake/broad_uger_config.yaml"],
                    "resources": ["magma_linux/magma"],
                    "resources": ["resources/magma_linux/reference_data/NCBI37.3.gene.loc"],
                    "src": ["snakemake/Snakefile"]},
      zip_safe=False)
{'fraction_non_alphanumeric': 0.13585508790623335, 'fraction_numerical': 0.005327650506126798, 'mean_word_length': 3.418823529411765, 'pattern_counts': {'":': 10, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3119195', 'n_tokens_mistral': 594, 'n_tokens_neox': 553, 'n_words': 81}