<commit_before>#!/bin/sh
set -eo pipefail -o nounset

## Get the GRCh38 Reference Genome release 95. This is the primary assembly file
wget --quiet ftp://ftp.ensembl.org/pub/release-95/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna_rm.primary_assembly.fa.gz

## Unzip the file using GNU zip. (All files are compacted with GNU Zip for storage efficiency.) (ftp://ftp.ensembl.org/pub/release-95/fasta/homo_sapiens/dna/README)
gzip -fd Homo_sapiens.GRCh38.dna_rm.primary_assembly.fa.gz

## Index the reference genome using samtools
samtools faidx Homo_sapiens.GRCh38.dna_rm.primary_assembly.fa
<commit_msg>Update grch38 reference genome recipe<commit_after>#!/bin/sh
set -eo pipefail -o nounset

## Get the GRCh38 Reference Genome release 95. This is the primary assembly file
wget --quiet ftp://ftp.ensembl.org/pub/release-95/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz

## Unzip the file using GNU zip. (All files are compacted with GNU Zip for storage efficiency.) (ftp://ftp.ensembl.org/pub/release-95/fasta/homo_sapiens/dna/README)
gzip -fd Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz

## Index the reference genome using samtools
samtools faidx Homo_sapiens.GRCh38.dna.primary_assembly.fa

{'fraction_non_alphanumeric': 0.10319410319410319, 'fraction_numerical': 0.02457002457002457, 'mean_word_length': 4.791469194312796, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5937539', 'n_tokens_mistral': 485, 'n_tokens_neox': 446, 'n_words': 106}