<commit_before>import os
import re
import ast
from setuptools import setup, find_packages


# version parsing from __init__ pulled from scikit-bio
# https://github.com/biocore/scikit-bio/blob/master/setup.py
# which is itself based off Flask's setup.py https://github.com/mitsuhiko/flask/blob/master/setup.py
_version_re = re.compile(r'__version__\s+=\s+(.*)')

with open('omicexperiment/__init__.py', 'rb') as f:
    hit = _version_re.search(f.read().decode('utf-8')).group(1)
    version = str(ast.literal_eval(hit))


here = os.path.abspath(os.path.dirname(__file__))
README = open(os.path.join(here, 'README.txt')).read()
CHANGES = open(os.path.join(here, 'CHANGES.txt')).read()

requires = [
    'numpy >= 1.10.4',
    'pandas >= 0.17.1',
    'biom-format >= 2.1.5',
    'pygal >= 2.1.1'
    ]

setup(name='omicexperiment',
      version=version,
      license='BSD',
      description='omicexperiment',
      long_description=README + '\n\n' +  CHANGES,
      classifiers=[
        "Programming Language :: Python",
        "License :: OSI Approved :: BSD License",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
        ],
      author='<NAME>',
      author_email='<EMAIL>',
      maintainer="<NAME>",
      maintainer_email="<EMAIL>",
      url='https://github.com/bassio/omicexperiment',
      keywords='bioinformatics',
      packages=find_packages(),
      include_package_data=True,
      zip_safe=False,
      test_suite='omicexperiment.tests',
      install_requires=requires,
      entry_points="""\
      """,
      )
<commit_msg>changes to setup.py<commit_after>import os
import re
import ast
from setuptools import setup, find_packages


# version parsing from __init__ pulled from scikit-bio
# https://github.com/biocore/scikit-bio/blob/master/setup.py
# which is itself based off Flask's setup.py https://github.com/mitsuhiko/flask/blob/master/setup.py
_version_re = re.compile(r'__version__\s+=\s+(.*)')

package_name = "omicexperiment"

with open('omicexperiment/__init__.py', 'rb') as f:
    hit = _version_re.search(f.read().decode('utf-8')).group(1)
    version = str(ast.literal_eval(hit))


here = os.path.abspath(os.path.dirname(__file__))
README = open(os.path.join(here, 'README.txt')).read()
CHANGES = open(os.path.join(here, 'CHANGES.txt')).read()

requires = [
    'numpy >= 1.10.4',
    'pandas >= 0.17.1',
    'biom-format >= 2.1.5',
    'pygal >= 2.1.1'
    ]

setup(name=package_name,
      packages=[package_name]
      version=version,
      license='BSD',
      description="For analysis of omic experiments.",
      long_description=README + '\n\n' +  CHANGES,
      classifiers=[
        "Programming Language :: Python",
        "License :: OSI Approved :: BSD License",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
        ],
      author='<NAME>',
      author_email='<EMAIL>',
      maintainer="<NAME>",
      maintainer_email="<EMAIL>",
      url='https://github.com/bassio/omicexperiment',
      download_url = 'https://github.com/bassio/omicexperiment/tarball/' + version,
      keywords='bioinformatics',
      packages=find_packages(),
      include_package_data=True,
      zip_safe=False,
      test_suite='omicexperiment.tests',
      install_requires=requires,
      entry_points="""\
      """,
      )

{'fraction_non_alphanumeric': 0.16190765492102066, 'fraction_numerical': 0.009720534629404616, 'mean_word_length': 3.355820105820106, 'pattern_counts': {'":': 0, '<': 11, '<?xml version=': 0, '>': 19, 'https://': 7, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 1, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6007701', 'n_tokens_mistral': 1168, 'n_tokens_neox': 1137, 'n_words': 184}