<commit_before>from setuptools import setup, find_packages

setup(
      name='MetaSV',
      version='0.1-alpha',
      description='MetaSV: An accurate and integrative structural-variant caller for next generation sequencing',
      author='<NAME>',
      author_email='<EMAIL>',
      url='https://github.com/bioinform/metasv',
      packages = find_packages(),
      install_requires = ["cython", "pysam==0.7.7", "pybedtools", "pyvcf"],
      package_data = {"metasv": ["resources/*"]},
      scripts=['scripts/run_metasv.py']
      )
<commit_msg>Add another script in install and add a dependency link for pysam<commit_after>from setuptools import setup, find_packages

setup(
      name='MetaSV',
      version='0.1-alpha',
      description='MetaSV: An accurate and integrative structural-variant caller for next generation sequencing',
      author='<NAME>',
      author_email='<EMAIL>',
      url='https://github.com/bioinform/metasv',
      packages = find_packages(),
      install_requires = ["cython", "pysam==0.7.7", "pybedtools", "pyvcf"],
      package_data = {"metasv": ["resources/*"]},
      scripts=['scripts/run_metasv.py', 'scripts/svtool_to_vcf.py'],
      dependency_links = ["https://pypi.python.org/packages/source/p/pysam/pysam-0.7.7.tar.gz"]
      )

{'fraction_non_alphanumeric': 0.1563721657544957, 'fraction_numerical': 0.010164190774042221, 'mean_word_length': 3.7058823529411766, 'pattern_counts': {'":': 2, '<': 7, '<?xml version=': 0, '>': 7, 'https://': 3, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5538425', 'n_tokens_mistral': 410, 'n_tokens_neox': 406, 'n_words': 80}