<commit_before>package edu.wustl.catissuecore.reportloader;

import java.util.Date;
import java.util.HashMap;
import java.util.Iterator;
import java.util.List;
import java.util.Set;

import edu.wustl.catissuecore.caties.util.CSVLogger;
import edu.wustl.catissuecore.caties.util.CaCoreAPIService;
import edu.wustl.catissuecore.caties.util.CaTIESConstants;
import edu.wustl.catissuecore.caties.util.CaTIESProperties;
import edu.wustl.catissuecore.caties.util.SiteInfoHandler;
import edu.wustl.catissuecore.caties.util.Utility;
import edu.wustl.catissuecore.domain.Participant;
import edu.wustl.catissuecore.domain.pathology.ReportLoaderQueue;
import edu.wustl.catissuecore.util.global.Constants;
import edu.wustl.common.util.global.CommonServiceLocator;
import edu.wustl.common.util.logger.Logger;

/**
 * @author sandeep_ranade
 * This class represents a thread which polls on report queue entries and
 * add report data to database. 
 * 
 */
public class ReportLoaderQueueProcessor extends Thread
{
	private transient Logger logger = Logger.getCommonLogger(ReportLoaderQueueProcessor.class);
	/**
	 * @see java.lang.Thread#run()
	 */
	public void run()
	{
		CSVLogger.configure(CaTIESConstants.LOGGER_QUEUE_PROCESSOR);
		Set participantSet=null;
		ReportLoaderQueue reportLoaderQueue=null;
		HL7Parser parser=null;
		Long startTime=null;
		Long endTime=null;
		
		String configFileName=new String(CommonServiceLocator.getInstance().getAppHome() + System.getProperty("file.separator")+"caTIES_conf"+System.getProperty("file.separator"));
		configFileName+=CaTIESProperties.getValue(CaTIESConstants.SECTION_HEADER_FILENAME);
		while(true)
		{
			try <commit_msg>CommonPackage integration:AppHome not required from CommonServiceLocator<commit_after>package edu.wustl.catissuecore.reportloader;

import java.util.Date;
import java.util.HashMap;
import java.util.Iterator;
import java.util.List;
import java.util.Set;

import edu.wustl.catissuecore.caties.util.CSVLogger;
import edu.wustl.catissuecore.caties.util.CaCoreAPIService;
import edu.wustl.catissuecore.caties.util.CaTIESConstants;
import edu.wustl.catissuecore.caties.util.CaTIESProperties;
import edu.wustl.catissuecore.caties.util.SiteInfoHandler;
import edu.wustl.catissuecore.caties.util.Utility;
import edu.wustl.catissuecore.domain.Participant;
import edu.wustl.catissuecore.domain.pathology.ReportLoaderQueue;
import edu.wustl.catissuecore.util.global.Constants;
import edu.wustl.common.util.global.CommonServiceLocator;
import edu.wustl.common.util.logger.Logger;

/**
 * @author sandeep_ranade
 * This class represents a thread which polls on report queue entries and
 * add report data to database. 
 * 
 */
public class ReportLoaderQueueProcessor extends Thread
{
	private transient Logger logger = Logger.getCommonLogger(ReportLoaderQueueProcessor.class);
	/**
	 * @see java.lang.Thread#run()
	 */
	public void run()
	{
		CSVLogger.configure(CaTIESConstants.LOGGER_QUEUE_PROCESSOR);
		Set participantSet=null;
		ReportLoaderQueue reportLoaderQueue=null;
		HL7Parser parser=null;
		Long startTime=null;
		Long endTime=null;
		
		String configFileName=new String(System.getProperty("user.dir") + System.getProperty("file.separator")+"caTIES_conf"+System.getProperty("file.separator"));
		configFileName+=CaTIESProperties.getValue(CaTIESConstants.SECTION_HEADER_FILENAME);
		while(true)
		{
			try 
{'fraction_non_alphanumeric': 0.10261748958953004, 'fraction_numerical': 0.000594883997620464, 'mean_word_length': 6.216738197424893, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2895978', 'n_tokens_mistral': 1139, 'n_tokens_neox': 1099, 'n_words': 177}