<commit_before># ChIP-exo flavor
#
# VERSION       0.1

FROM quay.io/bgruening/galaxy:master

MAINTAINER <NAME>, <EMAIL>

ENV GALAXY_CONFIG_BRAND="ChIP-exo" \
    GALAXY_CONFIG_ENABLE_BETA_TOOL_COMMAND_ISOLATION=True \
    GALAXY_CONFIG_CONDA_AUTO_INSTALL=True \
    GALAXY_CONFIG_CONDA_AUTO_INIT=True

RUN add-tool-shed --url 'https://toolshed.g2.bx.psu.edu' --name 'Main Tool Shed'
RUN apt-get -qq update && apt-get install --no-install-recommends -y openjdk-7-jdk

# Install ChIP-exo tools
ADD chipexo_tools.yml $GALAXY_ROOT/tools.yaml
RUN install-tools $GALAXY_ROOT/tools.yaml<commit_msg>Another attempt to fix<commit_after># ChIP-exo flavor
#
# VERSION       0.1

FROM quay.io/bgruening/galaxy:master

MAINTAINER <NAME>, <EMAIL>

ENV GALAXY_CONFIG_BRAND="ChIP-exo" \
    GALAXY_CONFIG_ENABLE_BETA_TOOL_COMMAND_ISOLATION=True

RUN add-tool-shed --url 'https://toolshed.g2.bx.psu.edu' --name 'Main Tool Shed'
RUN apt-get -qq update && apt-get install --no-install-recommends -y openjdk-7-jdk

# Install ChIP-exo tools
ADD chipexo_tools.yml $GALAXY_ROOT/tools.yaml
RUN install-tools $GALAXY_ROOT/tools.yaml
{'fraction_non_alphanumeric': 0.11552346570397112, 'fraction_numerical': 0.007220216606498195, 'mean_word_length': 4.383495145631068, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 7, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1711753', 'n_tokens_mistral': 472, 'n_tokens_neox': 453, 'n_words': 82}