<commit_before># Microbiome Summer School 2017

## Introduction to Mass Spectrometry Preprocessing and Machine Learning

### Table of Contents
1. [Introduction]()
2. [Basics]()
    1. [Getting Started]()
    2. [Objectives]()
3. [Section 1: Applying Virtual Lock Masses and Alignment]()
    1. [Loading the spectra]()
    2. [Applying the Virtual Lock Mass Algorithm]()
    3. [Applying Alignment]()
4. [Section 2: Applying Machine Learning Algorithms]()
    1. [Experimental Protocol]()
    2. [Cross-validation]()
    3. [Assessing the accuracy]()
5. [Conclusion]()


---

### Contact
This tutorial was created for presentation at the 2017 Microbiome Summer School (Québec City, Canada).

For any questions or comments, please contact [<NAME>](mailto:<EMAIL>) or [<NAME>](mailto:<EMAIL>).<commit_msg>Added general links<commit_after># Microbiome Summer School 2017

## Introduction to Mass Spectrometry Preprocessing and Machine Learning

### Table of Contents
1. [Introduction](sections/introduction/)
2. [Basics](sections/basics)
    1. [Getting Started]()
    2. [Objectives]()
3. [Section 1: Applying Virtual Lock Masses and Alignment](sections/vlm_align/)
    1. [Loading the spectra]()
    2. [Applying the Virtual Lock Mass Algorithm]()
    3. [Applying Alignment]()
4. [Section 2: Applying Machine Learning Algorithms](sections/machine_learning/)
    1. [Experimental Protocol]()
    2. [Cross-validation]()
    3. [Assessing the accuracy]()
5. [Conclusion](sections/conclusion/)


---

### Contact
This tutorial was created for presentation at the 2017 Microbiome Summer School (Québec City, Canada).

For any questions or comments, please contact [<NAME>](mailto:<EMAIL>) or [<NAME>](mailto:<EMAIL>aval.ca).
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