<commit_before>##### Define db and objectstore resources needed for FlyMine build #####

os.query.max-time=1000000000
os.query.max-limit=20000
os.query.max-offset=100000000
os.queue-len=100

# production database #

os.production.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.production.db=db.production
os.production.model=genomic
#os.production.truncatedClasses=org.flymine.model.genomic.BioProperty
os.production.logTable=executelog
os.production.minBagTableSize=100

db.production.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.production.datasource.dataSourceName=db.production
#db.production.datasource.serverName=server_name
#db.production.datasource.databaseName=db_name
#db.production.datasource.user=flymine
#db.production.datasource.password=<PASSWORD>
db.production.datasource.maxConnections=50
db.production.driver=org.postgresql.Driver
db.production.platform=PostgreSQL

osw.production.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.production.os=os.production

#integration.production.class=org.intermine.dataloader.IntegrationWriterFirstSourceImpl
integration.production.class=org.intermine.dataloader.IntegrationWriterDataTrackingImpl
integration.production.osw=osw.production
integration.production.datatrackerMaxSize=300000
integration.production.datatrackerCommitSize=10000


##### TARGET ITEMS DATABASES #####

# ensembl anopheles target format items

db.ensembl-anoph-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-anoph-tgt-items.datasource.dataSourceName=db.ensembl-anoph-tgt-items
#db.ensembl-anoph-tgt-items.datasource.serverName=server_name
#db.ensembl-anoph-tgt-items.datasource.databaseName=db_name
#db.ensembl-anoph-tgt-items.datasource.user=user
#db.ensembl-anoph-tgt-items.datasource.password=password
db.ensembl-anoph-tgt-items.datasource.maxConnections=10
db.ensembl-anoph-tgt-items.driver=org.postgresql.Driver
db.ensembl-anoph-tgt-items.platform=PostgreSQL

os.ensembl-anoph-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-anoph-tgt-items-std.db=db.ensembl-anoph-tgt-items
os.ensembl-anoph-tgt-items-std.missingTables=InterMineObject
os.ensembl-anoph-tgt-items-std.model=fulldata
os.ensembl-anoph-tgt-items-std.minBagTableSize=10000

os.ensembl-anoph-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-anoph-tgt-items.os=os.ensembl-anoph-tgt-items-std
os.ensembl-anoph-tgt-items.model=fulldata

osw.ensembl-anoph-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-anoph-tgt-items.os=os.ensembl-anoph-tgt-items-std

os.ensembl-anoph-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.ensembl-anoph-translated-std.model=genomic
os.ensembl-anoph-translated-std.os=os.ensembl-anoph-tgt-items
os.ensembl-anoph-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.ensembl-anoph-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.ensembl-anoph-translated.model=genomic
os.ensembl-anoph-translated.os=os.ensembl-anoph-translated-std

# ensembl drosophila target format items

db.ensembl-dros-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-dros-tgt-items.datasource.dataSourceName=db.ensembl-dros-tgt-items
#db.ensembl-dros-tgt-items.datasource.serverName=server_name
#db.ensembl-dros-tgt-items.datasource.databaseName=db_name
#db.ensembl-dros-tgt-items.datasource.user=user
#db.ensembl-dros-tgt-items.datasource.password=password
db.ensembl-dros-tgt-items.datasource.maxConnections=10
db.ensembl-dros-tgt-items.driver=org.postgresql.Driver
db.ensembl-dros-tgt-items.platform=PostgreSQL

os.ensembl-dros-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-dros-tgt-items-std.db=db.ensembl-dros-tgt-items
os.ensembl-dros-tgt-items-std.missingTables=InterMineObject
os.ensembl-dros-tgt-items-std.model=fulldata
os.ensembl-dros-tgt-items-std.minBagTableSize=10000

os.ensembl-dros-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-dros-tgt-items.os=os.ensembl-dros-tgt-items-std
os.ensembl-dros-tgt-items.model=fulldata

osw.ensembl-dros-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-dros-tgt-items.os=os.ensembl-dros-tgt-items-std

os.ensembl-dros-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.ensembl-dros-translated-std.model=genomic
os.ensembl-dros-translated-std.os=os.ensembl-dros-tgt-items
os.ensembl-dros-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.ensembl-dros-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.ensembl-dros-translated.model=genomic
os.ensembl-dros-translated.os=os.ensembl-dros-translated-std

# ensembl human target format items

db.ensembl-human-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-human-tgt-items.datasource.dataSourceName=db.ensembl-human-tgt-items
#db.ensembl-human-tgt-items.datasource.serverName=server_name
#db.ensembl-human-tgt-items.datasource.databaseName=db_name
#db.ensembl-human-tgt-items.datasource.user=user
#db.ensembl-human-tgt-items.datasource.password=password
db.ensembl-human-tgt-items.datasource.maxConnections=10
db.ensembl-human-tgt-items.driver=org.postgresql.Driver
db.ensembl-human-tgt-items.platform=PostgreSQL

os.ensembl-human-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-human-tgt-items-std.db=db.ensembl-human-tgt-items
os.ensembl-human-tgt-items-std.missingTables=InterMineObject
os.ensembl-human-tgt-items-std.model=fulldata
os.ensembl-human-tgt-items-std.minBagTableSize=10000

os.ensembl-human-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-human-tgt-items.os=os.ensembl-human-tgt-items-std
os.ensembl-human-tgt-items.model=fulldata

osw.ensembl-human-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-human-tgt-items.os=os.ensembl-human-tgt-items-std

os.ensembl-human-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.ensembl-human-translated-std.model=genomic
os.ensembl-human-translated-std.os=os.ensembl-human-tgt-items
os.ensembl-human-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.ensembl-human-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.ensembl-human-translated.model=genomic
os.ensembl-human-translated.os=os.ensembl-human-translated-std


# chado target format items
db.chado-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.chado-tgt-items.datasource.dataSourceName=db.common-tgt-items
#db.chado-tgt-items.datasource.serverName=server_name
#db.chado-tgt-items.datasource.databaseName=db_name
#db.chado-tgt-items.datasource.user=user
#db.chado-tgt-items.datasource.password=password
db.chado-tgt-items.datasource.maxConnections=10
db.chado-tgt-items.driver=org.postgresql.Driver
db.chado-tgt-items.platform=PostgreSQL

os.chado-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.chado-tgt-items-std.db=db.common-tgt-items
os.chado-tgt-items-std.missingTables=InterMineObject
os.chado-tgt-items-std.model=fulldata
os.chado-tgt-items-std.minBagTableSize=10000

os.chado-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.chado-tgt-items.os=os.chado-tgt-items-std
os.chado-tgt-items.model=fulldata

osw.chado-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.chado-tgt-items.os=os.chado-tgt-items-std

os.chado-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.chado-translated-std.model=genomic
os.chado-translated-std.os=os.chado-tgt-items
os.chado-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.chado-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.chado-translated.model=genomic
os.chado-translated.os=os.chado-translated-std


# common target format items database
db.common-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.common-tgt-items.datasource.dataSourceName=db.common-tgt-items
#db.common-tgt-items.datasource.serverName=server_name
#db.common-tgt-items.datasource.databaseName=db_name
#db.common-tgt-items.datasource.user=user
#db.common-tgt-items.datasource.password=password
db.common-tgt-items.datasource.maxConnections=10
db.common-tgt-items.driver=org.postgresql.Driver
db.common-tgt-items.platform=PostgreSQL

# ensembl orthologue target items objectstore

os.ensembl-orthologue-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-orthologue-tgt-items-std.db=db.common-tgt-items
os.ensembl-orthologue-tgt-items-std.missingTables=InterMineObject
os.ensembl-orthologue-tgt-items-std.model=fulldata
os.ensembl-orthologue-tgt-items-std.minBagTableSize=10000

os.ensembl-orthologue-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-orthologue-tgt-items.os=os.ensembl-orthologue-tgt-items-std
os.ensembl-orthologue-tgt-items.model=fulldata

osw.ensembl-orthologue-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-orthologue-tgt-items.os=os.ensembl-orthologue-tgt-items-std

os.ensembl-orthologue-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.ensembl-orthologue-translated-std.model=genomic
os.ensembl-orthologue-translated-std.os=os.ensembl-orthologue-tgt-items
os.ensembl-orthologue-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.ensembl-orthologue-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.ensembl-orthologue-translated.model=genomic
os.ensembl-orthologue-translated.os=os.ensembl-orthologue-translated-std


# inparanoid orthologue target items objectstore

os.inparanoid-orthologue-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.inparanoid-orthologue-tgt-items-std.db=db.common-tgt-items
os.inparanoid-orthologue-tgt-items-std.missingTables=InterMineObject
os.inparanoid-orthologue-tgt-items-std.model=fulldata
os.inparanoid-orthologue-tgt-items-std.minBagTableSize=10000

os.inparanoid-orthologue-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.inparanoid-orthologue-tgt-items.os=os.inparanoid-orthologue-tgt-items-std
os.inparanoid-orthologue-tgt-items.model=fulldata

osw.inparanoid-orthologue-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.inparanoid-orthologue-tgt-items.os=os.inparanoid-orthologue-tgt-items-std

os.inparanoid-orthologue-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.inparanoid-orthologue-translated-std.model=genomic
os.inparanoid-orthologue-translated-std.os=os.inparanoid-orthologue-tgt-items
os.inparanoid-orthologue-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.inparanoid-orthologue-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.inparanoid-orthologue-translated.model=genomic
os.inparanoid-orthologue-translated.os=os.inparanoid-orthologue-translated-std


# RNAi target items objectstore

os.rnai-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.rnai-tgt-items-std.db=db.common-tgt-items
os.rnai-tgt-items-std.missingTables=InterMineObject
os.rnai-tgt-items-std.model=fulldata
os.rnai-tgt-items-std.minBagTableSize=10000

osw.rnai-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.rnai-tgt-items.os=os.rnai-tgt-items-std

os.rnai-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.rnai-tgt-items.os=os.rnai-tgt-items-std
os.rnai-tgt-items.model=fulldata

os.rnai-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.rnai-translated-std.model=genomic
os.rnai-translated-std.os=os.rnai-tgt-items
os.rnai-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.rnai-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.rnai-translated.model=genomic
os.rnai-translated.os=os.rnai-translated-std


# Taxonomy target items objectstore

os.taxonomy-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.taxonomy-tgt-items-std.db=db.common-tgt-items
os.taxonomy-tgt-items-std.missingTables=InterMineObject
os.taxonomy-tgt-items-std.model=fulldata
os.taxonomy-tgt-items-std.minBagTableSize=10000


osw.taxonomy-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.taxonomy-tgt-items.os=os.taxonomy-tgt-items-std

os.taxonomy-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.taxonomy-tgt-items.os=os.taxonomy-tgt-items-std
os.taxonomy-tgt-items.model=fulldata

os.taxonomy-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.taxonomy-translated-std.model=genomic
os.taxonomy-translated-std.os=os.taxonomy-tgt-items
os.taxonomy-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.taxonomy-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.taxonomy-translated.model=genomic
os.taxonomy-translated.os=os.taxonomy-translated-std


# Phenotype target items objectstore

os.phenotype-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.phenotype-tgt-items-std.db=db.common-tgt-items
os.phenotype-tgt-items-std.missingTables=InterMineObject
os.phenotype-tgt-items-std.model=fulldata
os.phenotype-tgt-items-std.minBagTableSize=10000


osw.phenotype-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.phenotype-tgt-items.os=os.phenotype-tgt-items-std

os.phenotype-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.phenotype-tgt-items.os=os.phenotype-tgt-items-std
os.phenotype-tgt-items.model=fulldata

os.phenotype-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.phenotype-translated-std.model=genomic
os.phenotype-translated-std.os=os.phenotype-tgt-items
os.phenotype-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.phenotype-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.phenotype-translated.model=genomic
os.phenotype-translated.os=os.phenotype-translated-std

# PSI DAG target items objectstore

os.psi-dag-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.psi-dag-tgt-items-std.db=db.common-tgt-items
os.psi-dag-tgt-items-std.missingTables=InterMineObject
os.psi-dag-tgt-items-std.model=fulldata
os.psi-dag-tgt-items-std.minBagTableSize=10000

osw.psi-dag-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.psi-dag-tgt-items.os=os.psi-dag-tgt-items-std

os.psi-dag-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.psi-dag-tgt-items.os=os.psi-dag-tgt-items-std
os.psi-dag-tgt-items.model=fulldata

os.psi-dag-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.psi-dag-translated-std.model=genomic
os.psi-dag-translated-std.os=os.psi-dag-tgt-items
os.psi-dag-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.psi-dag-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.psi-dag-translated.model=genomic
os.psi-dag-translated.os=os.psi-dag-translated-std

# PSI target items objectstore

os.psi-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.psi-tgt-items-std.db=db.common-tgt-items
os.psi-tgt-items-std.missingTables=InterMineObject
os.psi-tgt-items-std.model=fulldata
os.psi-tgt-items-std.minBagTableSize=10000

osw.psi-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.psi-tgt-items.os=os.psi-tgt-items-std

os.psi-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.psi-tgt-items.os=os.psi-tgt-items-std
os.psi-tgt-items.model=fulldata

os.psi-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.psi-translated-std.model=genomic
os.psi-translated-std.os=os.psi-tgt-items
os.psi-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.psi-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.psi-translated.model=genomic
os.psi-translated.os=os.psi-translated-std

# PROTEIN STRUCTURE target items objectstore

os.protein_structure-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.protein_structure-tgt-items-std.db=db.common-tgt-items
os.protein_structure-tgt-items-std.missingTables=InterMineObject
os.protein_structure-tgt-items-std.model=fulldata
os.protein_structure-tgt-items-std.minBagTableSize=10000

osw.protein_structure-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.protein_structure-tgt-items.os=os.protein_structure-tgt-items-std

os.protein_structure-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.protein_structure-tgt-items.os=os.protein_structure-tgt-items-std
os.protein_structure-tgt-items.model=fulldata

os.protein_structure-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.protein_structure-translated-std.model=genomic
os.protein_structure-translated-std.os=os.protein_structure-tgt-items
os.protein_structure-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.protein_structure-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.protein_structure-translated.model=genomic
os.protein_structure-translated.os=os.protein_structure-translated-std


# UNIPROT target items objectstore

os.uniprot-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.uniprot-tgt-items-std.db=db.uniprot-tgt-items
os.uniprot-tgt-items-std.missingTables=InterMineObject
os.uniprot-tgt-items-std.model=fulldata
os.uniprot-tgt-items-std.minBagTableSize=10000

osw.uniprot-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.uniprot-tgt-items.os=os.uniprot-tgt-items-std

os.uniprot-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.uniprot-tgt-items.os=os.uniprot-tgt-items-std
os.uniprot-tgt-items.model=fulldata

os.uniprot-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.uniprot-translated-std.model=genomic
os.uniprot-translated-std.os=os.uniprot-tgt-items
os.uniprot-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.uniprot-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.uniprot-translated.model=genomic
os.uniprot-translated.os=os.uniprot-translated-std

# GO DAG target items objectstore

os.go-dag-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.go-dag-tgt-items-std.db=db.common-tgt-items
os.go-dag-tgt-items-std.missingTables=InterMineObject
os.go-dag-tgt-items-std.model=fulldata
os.go-dag-tgt-items-std.minBagTableSize=10000

osw.go-dag-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.go-dag-tgt-items.os=os.go-dag-tgt-items-std

os.go-dag-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.go-dag-tgt-items.os=os.go-dag-tgt-items-std
os.go-dag-tgt-items.model=fulldata

os.go-dag-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.go-dag-translated-std.model=genomic
os.go-dag-translated-std.os=os.go-dag-tgt-items
os.go-dag-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.go-dag-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.go-dag-translated.model=genomic
os.go-dag-translated.os=os.go-dag-translated-std

# GO annotation target items objectstore

os.go-annotation-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.go-annotation-tgt-items-std.db=db.common-tgt-items
os.go-annotation-tgt-items-std.missingTables=InterMineObject
os.go-annotation-tgt-items-std.model=fulldata
os.go-annotation-tgt-items-std.minBagTableSize=10000

osw.go-annotation-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.go-annotation-tgt-items.os=os.go-annotation-tgt-items-std

os.go-annotation-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.go-annotation-tgt-items.os=os.go-annotation-tgt-items-std
os.go-annotation-tgt-items.model=fulldata

os.go-annotation-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.go-annotation-translated-std.model=genomic
os.go-annotation-translated-std.os=os.go-annotation-tgt-items
os.go-annotation-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.go-annotation-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.go-annotation-translated.model=genomic
os.go-annotation-translated.os=os.go-annotation-translated-std

#GFF3 target items objectstore

os.gff3-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.gff3-tgt-items-std.db=db.common-tgt-items
os.gff3-tgt-items-std.missingTables=InterMineObject
os.gff3-tgt-items-std.model=fulldata
os.gff3-tgt-items-std.minBagTableSize=10000

osw.gff3-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.gff3-tgt-items.os=os.gff3-tgt-items-std

os.gff3-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.gff3-tgt-items.os=os.gff3-tgt-items-std
os.gff3-tgt-items.model=fulldata

os.gff3-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.gff3-translated-std.model=genomic
os.gff3-translated-std.os=os.gff3-tgt-items
os.gff3-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.gff3-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.gff3-translated.model=genomic
os.gff3-translated.os=os.gff3-translated-std


# MAGE target items objectstore

os.mage-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.mage-tgt-items-std.db=db.common-tgt-items
os.mage-tgt-items-std.missingTables=InterMineObject
os.mage-tgt-items-std.model=fulldata
os.mage-tgt-items-std.minBagTableSize=10000

osw.mage-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.mage-tgt-items.os=os.mage-tgt-items-std

os.mage-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.mage-tgt-items.os=os.mage-tgt-items-std
os.mage-tgt-items.model=fulldata

os.mage-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.mage-translated-std.model=genomic
os.mage-translated-std.os=os.mage-tgt-items
os.mage-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.mage-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.mage-translated.model=genomic
os.mage-translated.os=os.mage-translated-std

# FLYREG target items objectstore

os.flyreg-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.flyreg-tgt-items-std.db=db.common-tgt-items
os.flyreg-tgt-items-std.missingTables=InterMineObject
os.flyreg-tgt-items-std.model=fulldata
os.flyreg-tgt-items-std.minBagTableSize=10000

osw.flyreg-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.flyreg-tgt-items.os=os.flyreg-tgt-items-std

os.flyreg-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.flyreg-tgt-items.os=os.flyreg-tgt-items-std
os.flyreg-tgt-items.model=fulldata

os.flyreg-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.flyreg-translated-std.model=genomic
os.flyreg-translated-std.os=os.flyreg-tgt-items
os.flyreg-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.flyreg-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.flyreg-translated.model=genomic
os.flyreg-translated.os=os.flyreg-translated-std

# TILING_PATH target items objectstore

os.tiling_path-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.tiling_path-tgt-items-std.db=db.common-tgt-items
os.tiling_path-tgt-items-std.missingTables=InterMineObject
os.tiling_path-tgt-items-std.model=fulldata
os.tiling_path-tgt-items-std.minBagTableSize=10000

osw.tiling_path-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.tiling_path-tgt-items.os=os.tiling_path-tgt-items-std

os.tiling_path-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.tiling_path-tgt-items.os=os.tiling_path-tgt-items-std
os.tiling_path-tgt-items.model=fulldata

os.tiling_path-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.tiling_path-translated-std.model=genomic
os.tiling_path-translated-std.os=os.tiling_path-tgt-items
os.tiling_path-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.tiling_path-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.tiling_path-translated.model=genomic
os.tiling_path-translated.os=os.tiling_path-translated-std

# LONG_OLIGO target items objectstore

os.long_oligo-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.long_oligo-tgt-items-std.db=db.common-tgt-items
os.long_oligo-tgt-items-std.missingTables=InterMineObject
os.long_oligo-tgt-items-std.model=fulldata
os.long_oligo-tgt-items-std.minBagTableSize=10000

osw.long_oligo-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.long_oligo-tgt-items.os=os.long_oligo-tgt-items-std

os.long_oligo-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.long_oligo-tgt-items.os=os.long_oligo-tgt-items-std
os.long_oligo-tgt-items.model=fulldata

os.long_oligo-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.long_oligo-translated-std.model=genomic
os.long_oligo-translated-std.os=os.long_oligo-tgt-items
os.long_oligo-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.long_oligo-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.long_oligo-translated.model=genomic
os.long_oligo-translated.os=os.long_oligo-translated-std

# DROSDEL target items objectstore

os.drosdel-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.drosdel-tgt-items-std.db=db.common-tgt-items
os.drosdel-tgt-items-std.missingTables=InterMineObject
os.drosdel-tgt-items-std.model=fulldata
os.drosdel-tgt-items-std.minBagTableSize=10000

osw.drosdel-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.drosdel-tgt-items.os=os.drosdel-tgt-items-std

os.drosdel-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.drosdel-tgt-items.os=os.drosdel-tgt-items-std
os.drosdel-tgt-items.model=fulldata

os.drosdel-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.drosdel-translated-std.model=genomic
os.drosdel-translated-std.os=os.drosdel-tgt-items
os.drosdel-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.drosdel-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.drosdel-translated.model=genomic
os.drosdel-translated.os=os.drosdel-translated-std


##### SOURCE ITEMS DATABASES #####

# common source format items database
db.common-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.common-src-items.datasource.dataSourceName=db.common-src-items
#db.common-src-items.datasource.serverName=server_name
#db.common-src-items.datasource.databaseName=db_name
#db.common-src-items.datasource.user=user
#db.common-src-items.datasource.password=password
db.common-src-items.datasource.maxConnections=10
db.common-src-items.driver=org.postgresql.Driver
db.common-src-items.platform=PostgreSQL


# ensembl anopheles source format items

db.ensembl-anoph-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-anoph-src-items.datasource.dataSourceName=db.ensembl-anoph-src-items
#db.ensembl-anoph-src-items.datasource.serverName=server_name
#db.ensembl-anoph-src-items.datasource.databaseName=db_name
#db.ensembl-anoph-src-items.datasource.user=user
#db.ensembl-anoph-src-items.datasource.password=password
db.ensembl-anoph-src-items.datasource.maxConnections=10
db.ensembl-anoph-src-items.driver=org.postgresql.Driver
db.ensembl-anoph-src-items.platform=PostgreSQL

os.ensembl-anoph-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-anoph-src-items-std.db=db.ensembl-anoph-src-items
os.ensembl-anoph-src-items-std.missingTables=InterMineObject
os.ensembl-anoph-src-items-std.model=fulldata
os.ensembl-anoph-src-items-std.minBagTableSize=10000

os.ensembl-anoph-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-anoph-src-items.os=os.ensembl-anoph-src-items-std
os.ensembl-anoph-src-items.model=fulldata

osw.ensembl-anoph-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-anoph-src-items.os=os.ensembl-anoph-src-items-std


# ensembl drosophila source format items

db.ensembl-dros-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-dros-src-items.datasource.dataSourceName=db.ensembl-dros-src-items
#db.ensembl-dros-src-items.datasource.serverName=server_name
#db.ensembl-dros-src-items.datasource.databaseName=db_name
#db.ensembl-dros-src-items.datasource.user=user
#db.ensembl-dros-src-items.datasource.password=password
db.ensembl-dros-src-items.datasource.maxConnections=10
db.ensembl-dros-src-items.driver=org.postgresql.Driver
db.ensembl-dros-src-items.platform=PostgreSQL

os.ensembl-dros-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-dros-src-items-std.db=db.ensembl-dros-src-items
os.ensembl-dros-src-items-std.missingTables=InterMineObject
os.ensembl-dros-src-items-std.model=fulldata
os.ensembl-dros-src-items-std.minBagTableSize=10000

os.ensembl-dros-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-dros-src-items.os=os.ensembl-dros-src-items-std
os.ensembl-dros-src-items.model=fulldata

osw.ensembl-dros-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-dros-src-items.os=os.ensembl-dros-src-items-std


# ensembl human source format items

db.ensembl-human-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-human-src-items.datasource.dataSourceName=db.ensembl-human-src-items
#db.ensembl-human-src-items.datasource.serverName=server_name
#db.ensembl-human-src-items.datasource.databaseName=db_name
#db.ensembl-human-src-items.datasource.user=user
#db.ensembl-human-src-items.datasource.password=password
db.ensembl-human-src-items.datasource.maxConnections=10
db.ensembl-human-src-items.driver=org.postgresql.Driver
db.ensembl-human-src-items.platform=PostgreSQL

os.ensembl-human-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-human-src-items-std.db=db.ensembl-human-src-items
os.ensembl-human-src-items-std.missingTables=InterMineObject
os.ensembl-human-src-items-std.model=fulldata
os.ensembl-human-src-items-std.minBagTableSize=10000

os.ensembl-human-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-human-src-items.os=os.ensembl-human-src-items-std
os.ensembl-human-src-items.model=fulldata

osw.ensembl-human-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-human-src-items.os=os.ensembl-human-src-items-std

# chado source format items

db.chado-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.chado-src-items.datasource.dataSourceName=db.chado-src-items
#db.chado-src-items.datasource.serverName=server_name
#db.chado-src-items.datasource.databaseName=db_name
#db.chado-src-items.datasource.user=user
#db.chado-src-items.datasource.password=password
db.chado-src-items.datasource.maxConnections=10
db.chado-src-items.driver=org.postgresql.Driver
db.chado-src-items.platform=PostgreSQL

os.chado-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.chado-src-items-std.db=db.chado-src-items
os.chado-src-items-std.missingTables=InterMineObject
os.chado-src-items-std.model=fulldata
os.chado-src-items-std.minBagTableSize=10000

os.chado-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.chado-src-items.os=os.chado-src-items-std
os.chado-src-items.model=fulldata

osw.chado-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.chado-src-items.os=os.chado-src-items-std

# PSI source format items

os.psi-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.psi-src-items-std.db=db.common-src-items
os.psi-src-items-std.missingTables=InterMineObject
os.psi-src-items-std.model=fulldata
os.psi-src-items-std.minBagTableSize=10000

osw.psi-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.psi-src-items.os=os.psi-src-items-std

os.psi-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.psi-src-items.os=os.psi-src-items-std
os.psi-src-items.model=fulldata

# PROTEIN STRUCTURE source format items

os.protein_structure-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.protein_structure-src-items-std.db=db.common-src-items
os.protein_structure-src-items-std.missingTables=InterMineObject
os.protein_structure-src-items-std.model=fulldata
os.protein_structure-src-items-std.minBagTableSize=10000

osw.protein_structure-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.protein_structure-src-items.os=os.protein_structure-src-items-std

os.protein_structure-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.protein_structure-src-items.os=os.protein_structure-src-items-std
os.protein_structure-src-items.model=fulldata

# UNIPROT source format items

os.uniprot-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.uniprot-src-items-std.db=db.uniprot-src-items
os.uniprot-src-items-std.missingTables=InterMineObject
os.uniprot-src-items-std.model=fulldata
os.uniprot-src-items-std.minBagTableSize=10000

osw.uniprot-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.uniprot-src-items.os=os.uniprot-src-items-std

os.uniprot-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.uniprot-src-items.os=os.uniprot-src-items-std
os.uniprot-src-items.model=fulldata

# MAGE source format items

os.mage-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.mage-src-items-std.db=db.common-src-items
os.mage-src-items-std.missingTables=InterMineObject
os.mage-src-items-std.model=fulldata
os.mage-src-items-std.minBagTableSize=10000

osw.mage-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.mage-src-items.os=os.mage-src-items-std

os.mage-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.mage-src-items.os=os.mage-src-items-std
os.mage-src-items.model=fulldata


##### SOURCE DATABASES #####

# chado source database

db.chado.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.chado.datasource.dataSourceName=db.chado
#db.chado.datasource.serverName=server_name
#db.chado.datasource.databaseName=chado_db_name
#db.chado.datasource.user=user
#db.chado.datasource.password=password
db.chado.datasource.maxConnections=10
db.chado.driver=org.postgresql.Driver
db.chado.platform=PostgreSQL

# ensembl anopheles source database

db.ensembl-anopheles.datasource.class=com.mysql.jdbc.jdbc2.optional.MysqlConnectionPoolDataSource
db.ensembl-anopheles.datasource.dataSourceName=db.ensembl-anopheles
#db.ensembl-anopheles.datasource.serverName=server_name
#db.ensembl-anopheles.datasource.databaseName=anopheles_dbname
#db.ensembl-anopheles.datasource.user=user
#db.ensembl-anopheles.datasource.password=password
db.ensembl-anopheles.datasource.maxConnections=10
db.ensembl-anopheles.driver=com.mysql.jdbc.Driver
db.ensembl-anopheles.platform=MySQL

# ensembl drosophila source database

db.ensembl-drosophila.datasource.class=com.mysql.jdbc.jdbc2.optional.MysqlConnectionPoolDataSource
db.ensembl-drosophila.datasource.dataSourceName=db.ensembl-drosophila
#db.ensembl-drosophila.datasource.serverName=server_name
#db.ensembl-drosophila.datasource.databaseName=drosophila_dbname
#db.ensembl-drosophila.datasource.user=user
#db.ensembl-drosophila.datasource.password=password
db.ensembl-drosophila.datasource.maxConnections=10
db.ensembl-drosophila.driver=com.mysql.jdbc.Driver
db.ensembl-drosophila.platform=MySQL


# ensembl human source database

db.ensembl-human.datasource.class=com.mysql.jdbc.jdbc2.optional.MysqlConnectionPoolDataSource
db.ensembl-human.datasource.dataSourceName=db.ensembl-human
#db.ensembl-human.datasource.serverName=server_name
#db.ensembl-human.datasource.databaseName=human_dbname
#db.ensembl-human.datasource.user=user
#db.ensembl-human.datasource.password=password
db.ensembl-human.datasource.maxConnections=10
db.ensembl-human.driver=com.mysql.jdbc.Driver
db.ensembl-human.platform=MySQL

<commit_msg>changed uniprot back to using common items databases<commit_after>##### Define db and objectstore resources needed for FlyMine build #####

os.query.max-time=1000000000
os.query.max-limit=20000
os.query.max-offset=100000000
os.queue-len=100

# production database #

os.production.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.production.db=db.production
os.production.model=genomic
#os.production.truncatedClasses=org.flymine.model.genomic.BioProperty
os.production.logTable=executelog
os.production.minBagTableSize=100

db.production.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.production.datasource.dataSourceName=db.production
#db.production.datasource.serverName=server_name
#db.production.datasource.databaseName=db_name
#db.production.datasource.user=flymine
#db.production.datasource.password=<PASSWORD>
db.production.datasource.maxConnections=50
db.production.driver=org.postgresql.Driver
db.production.platform=PostgreSQL

osw.production.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.production.os=os.production

#integration.production.class=org.intermine.dataloader.IntegrationWriterFirstSourceImpl
integration.production.class=org.intermine.dataloader.IntegrationWriterDataTrackingImpl
integration.production.osw=osw.production
integration.production.datatrackerMaxSize=300000
integration.production.datatrackerCommitSize=10000


##### TARGET ITEMS DATABASES #####

# ensembl anopheles target format items

db.ensembl-anoph-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-anoph-tgt-items.datasource.dataSourceName=db.ensembl-anoph-tgt-items
#db.ensembl-anoph-tgt-items.datasource.serverName=server_name
#db.ensembl-anoph-tgt-items.datasource.databaseName=db_name
#db.ensembl-anoph-tgt-items.datasource.user=user
#db.ensembl-anoph-tgt-items.datasource.password=password
db.ensembl-anoph-tgt-items.datasource.maxConnections=10
db.ensembl-anoph-tgt-items.driver=org.postgresql.Driver
db.ensembl-anoph-tgt-items.platform=PostgreSQL

os.ensembl-anoph-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-anoph-tgt-items-std.db=db.ensembl-anoph-tgt-items
os.ensembl-anoph-tgt-items-std.missingTables=InterMineObject
os.ensembl-anoph-tgt-items-std.model=fulldata
os.ensembl-anoph-tgt-items-std.minBagTableSize=10000

os.ensembl-anoph-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-anoph-tgt-items.os=os.ensembl-anoph-tgt-items-std
os.ensembl-anoph-tgt-items.model=fulldata

osw.ensembl-anoph-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-anoph-tgt-items.os=os.ensembl-anoph-tgt-items-std

os.ensembl-anoph-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.ensembl-anoph-translated-std.model=genomic
os.ensembl-anoph-translated-std.os=os.ensembl-anoph-tgt-items
os.ensembl-anoph-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.ensembl-anoph-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.ensembl-anoph-translated.model=genomic
os.ensembl-anoph-translated.os=os.ensembl-anoph-translated-std

# ensembl drosophila target format items

db.ensembl-dros-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-dros-tgt-items.datasource.dataSourceName=db.ensembl-dros-tgt-items
#db.ensembl-dros-tgt-items.datasource.serverName=server_name
#db.ensembl-dros-tgt-items.datasource.databaseName=db_name
#db.ensembl-dros-tgt-items.datasource.user=user
#db.ensembl-dros-tgt-items.datasource.password=password
db.ensembl-dros-tgt-items.datasource.maxConnections=10
db.ensembl-dros-tgt-items.driver=org.postgresql.Driver
db.ensembl-dros-tgt-items.platform=PostgreSQL

os.ensembl-dros-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-dros-tgt-items-std.db=db.ensembl-dros-tgt-items
os.ensembl-dros-tgt-items-std.missingTables=InterMineObject
os.ensembl-dros-tgt-items-std.model=fulldata
os.ensembl-dros-tgt-items-std.minBagTableSize=10000

os.ensembl-dros-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-dros-tgt-items.os=os.ensembl-dros-tgt-items-std
os.ensembl-dros-tgt-items.model=fulldata

osw.ensembl-dros-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-dros-tgt-items.os=os.ensembl-dros-tgt-items-std

os.ensembl-dros-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.ensembl-dros-translated-std.model=genomic
os.ensembl-dros-translated-std.os=os.ensembl-dros-tgt-items
os.ensembl-dros-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.ensembl-dros-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.ensembl-dros-translated.model=genomic
os.ensembl-dros-translated.os=os.ensembl-dros-translated-std

# ensembl human target format items

db.ensembl-human-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-human-tgt-items.datasource.dataSourceName=db.ensembl-human-tgt-items
#db.ensembl-human-tgt-items.datasource.serverName=server_name
#db.ensembl-human-tgt-items.datasource.databaseName=db_name
#db.ensembl-human-tgt-items.datasource.user=user
#db.ensembl-human-tgt-items.datasource.password=password
db.ensembl-human-tgt-items.datasource.maxConnections=10
db.ensembl-human-tgt-items.driver=org.postgresql.Driver
db.ensembl-human-tgt-items.platform=PostgreSQL

os.ensembl-human-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-human-tgt-items-std.db=db.ensembl-human-tgt-items
os.ensembl-human-tgt-items-std.missingTables=InterMineObject
os.ensembl-human-tgt-items-std.model=fulldata
os.ensembl-human-tgt-items-std.minBagTableSize=10000

os.ensembl-human-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-human-tgt-items.os=os.ensembl-human-tgt-items-std
os.ensembl-human-tgt-items.model=fulldata

osw.ensembl-human-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-human-tgt-items.os=os.ensembl-human-tgt-items-std

os.ensembl-human-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.ensembl-human-translated-std.model=genomic
os.ensembl-human-translated-std.os=os.ensembl-human-tgt-items
os.ensembl-human-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.ensembl-human-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.ensembl-human-translated.model=genomic
os.ensembl-human-translated.os=os.ensembl-human-translated-std


# chado target format items
db.chado-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.chado-tgt-items.datasource.dataSourceName=db.common-tgt-items
#db.chado-tgt-items.datasource.serverName=server_name
#db.chado-tgt-items.datasource.databaseName=db_name
#db.chado-tgt-items.datasource.user=user
#db.chado-tgt-items.datasource.password=password
db.chado-tgt-items.datasource.maxConnections=10
db.chado-tgt-items.driver=org.postgresql.Driver
db.chado-tgt-items.platform=PostgreSQL

os.chado-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.chado-tgt-items-std.db=db.common-tgt-items
os.chado-tgt-items-std.missingTables=InterMineObject
os.chado-tgt-items-std.model=fulldata
os.chado-tgt-items-std.minBagTableSize=10000

os.chado-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.chado-tgt-items.os=os.chado-tgt-items-std
os.chado-tgt-items.model=fulldata

osw.chado-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.chado-tgt-items.os=os.chado-tgt-items-std

os.chado-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.chado-translated-std.model=genomic
os.chado-translated-std.os=os.chado-tgt-items
os.chado-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.chado-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.chado-translated.model=genomic
os.chado-translated.os=os.chado-translated-std


# common target format items database
db.common-tgt-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.common-tgt-items.datasource.dataSourceName=db.common-tgt-items
#db.common-tgt-items.datasource.serverName=server_name
#db.common-tgt-items.datasource.databaseName=db_name
#db.common-tgt-items.datasource.user=user
#db.common-tgt-items.datasource.password=password
db.common-tgt-items.datasource.maxConnections=10
db.common-tgt-items.driver=org.postgresql.Driver
db.common-tgt-items.platform=PostgreSQL

# ensembl orthologue target items objectstore

os.ensembl-orthologue-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-orthologue-tgt-items-std.db=db.common-tgt-items
os.ensembl-orthologue-tgt-items-std.missingTables=InterMineObject
os.ensembl-orthologue-tgt-items-std.model=fulldata
os.ensembl-orthologue-tgt-items-std.minBagTableSize=10000

os.ensembl-orthologue-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-orthologue-tgt-items.os=os.ensembl-orthologue-tgt-items-std
os.ensembl-orthologue-tgt-items.model=fulldata

osw.ensembl-orthologue-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-orthologue-tgt-items.os=os.ensembl-orthologue-tgt-items-std

os.ensembl-orthologue-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.ensembl-orthologue-translated-std.model=genomic
os.ensembl-orthologue-translated-std.os=os.ensembl-orthologue-tgt-items
os.ensembl-orthologue-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.ensembl-orthologue-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.ensembl-orthologue-translated.model=genomic
os.ensembl-orthologue-translated.os=os.ensembl-orthologue-translated-std


# inparanoid orthologue target items objectstore

os.inparanoid-orthologue-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.inparanoid-orthologue-tgt-items-std.db=db.common-tgt-items
os.inparanoid-orthologue-tgt-items-std.missingTables=InterMineObject
os.inparanoid-orthologue-tgt-items-std.model=fulldata
os.inparanoid-orthologue-tgt-items-std.minBagTableSize=10000

os.inparanoid-orthologue-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.inparanoid-orthologue-tgt-items.os=os.inparanoid-orthologue-tgt-items-std
os.inparanoid-orthologue-tgt-items.model=fulldata

osw.inparanoid-orthologue-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.inparanoid-orthologue-tgt-items.os=os.inparanoid-orthologue-tgt-items-std

os.inparanoid-orthologue-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.inparanoid-orthologue-translated-std.model=genomic
os.inparanoid-orthologue-translated-std.os=os.inparanoid-orthologue-tgt-items
os.inparanoid-orthologue-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.inparanoid-orthologue-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.inparanoid-orthologue-translated.model=genomic
os.inparanoid-orthologue-translated.os=os.inparanoid-orthologue-translated-std


# RNAi target items objectstore

os.rnai-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.rnai-tgt-items-std.db=db.common-tgt-items
os.rnai-tgt-items-std.missingTables=InterMineObject
os.rnai-tgt-items-std.model=fulldata
os.rnai-tgt-items-std.minBagTableSize=10000

osw.rnai-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.rnai-tgt-items.os=os.rnai-tgt-items-std

os.rnai-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.rnai-tgt-items.os=os.rnai-tgt-items-std
os.rnai-tgt-items.model=fulldata

os.rnai-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.rnai-translated-std.model=genomic
os.rnai-translated-std.os=os.rnai-tgt-items
os.rnai-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.rnai-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.rnai-translated.model=genomic
os.rnai-translated.os=os.rnai-translated-std


# Taxonomy target items objectstore

os.taxonomy-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.taxonomy-tgt-items-std.db=db.common-tgt-items
os.taxonomy-tgt-items-std.missingTables=InterMineObject
os.taxonomy-tgt-items-std.model=fulldata
os.taxonomy-tgt-items-std.minBagTableSize=10000


osw.taxonomy-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.taxonomy-tgt-items.os=os.taxonomy-tgt-items-std

os.taxonomy-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.taxonomy-tgt-items.os=os.taxonomy-tgt-items-std
os.taxonomy-tgt-items.model=fulldata

os.taxonomy-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.taxonomy-translated-std.model=genomic
os.taxonomy-translated-std.os=os.taxonomy-tgt-items
os.taxonomy-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator

os.taxonomy-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.taxonomy-translated.model=genomic
os.taxonomy-translated.os=os.taxonomy-translated-std


# Phenotype target items objectstore

os.phenotype-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.phenotype-tgt-items-std.db=db.common-tgt-items
os.phenotype-tgt-items-std.missingTables=InterMineObject
os.phenotype-tgt-items-std.model=fulldata
os.phenotype-tgt-items-std.minBagTableSize=10000


osw.phenotype-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.phenotype-tgt-items.os=os.phenotype-tgt-items-std

os.phenotype-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.phenotype-tgt-items.os=os.phenotype-tgt-items-std
os.phenotype-tgt-items.model=fulldata

os.phenotype-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.phenotype-translated-std.model=genomic
os.phenotype-translated-std.os=os.phenotype-tgt-items
os.phenotype-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.phenotype-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.phenotype-translated.model=genomic
os.phenotype-translated.os=os.phenotype-translated-std

# PSI DAG target items objectstore

os.psi-dag-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.psi-dag-tgt-items-std.db=db.common-tgt-items
os.psi-dag-tgt-items-std.missingTables=InterMineObject
os.psi-dag-tgt-items-std.model=fulldata
os.psi-dag-tgt-items-std.minBagTableSize=10000

osw.psi-dag-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.psi-dag-tgt-items.os=os.psi-dag-tgt-items-std

os.psi-dag-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.psi-dag-tgt-items.os=os.psi-dag-tgt-items-std
os.psi-dag-tgt-items.model=fulldata

os.psi-dag-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.psi-dag-translated-std.model=genomic
os.psi-dag-translated-std.os=os.psi-dag-tgt-items
os.psi-dag-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.psi-dag-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.psi-dag-translated.model=genomic
os.psi-dag-translated.os=os.psi-dag-translated-std

# PSI target items objectstore

os.psi-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.psi-tgt-items-std.db=db.common-tgt-items
os.psi-tgt-items-std.missingTables=InterMineObject
os.psi-tgt-items-std.model=fulldata
os.psi-tgt-items-std.minBagTableSize=10000

osw.psi-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.psi-tgt-items.os=os.psi-tgt-items-std

os.psi-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.psi-tgt-items.os=os.psi-tgt-items-std
os.psi-tgt-items.model=fulldata

os.psi-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.psi-translated-std.model=genomic
os.psi-translated-std.os=os.psi-tgt-items
os.psi-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.psi-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.psi-translated.model=genomic
os.psi-translated.os=os.psi-translated-std

# PROTEIN STRUCTURE target items objectstore

os.protein_structure-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.protein_structure-tgt-items-std.db=db.common-tgt-items
os.protein_structure-tgt-items-std.missingTables=InterMineObject
os.protein_structure-tgt-items-std.model=fulldata
os.protein_structure-tgt-items-std.minBagTableSize=10000

osw.protein_structure-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.protein_structure-tgt-items.os=os.protein_structure-tgt-items-std

os.protein_structure-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.protein_structure-tgt-items.os=os.protein_structure-tgt-items-std
os.protein_structure-tgt-items.model=fulldata

os.protein_structure-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.protein_structure-translated-std.model=genomic
os.protein_structure-translated-std.os=os.protein_structure-tgt-items
os.protein_structure-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.protein_structure-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.protein_structure-translated.model=genomic
os.protein_structure-translated.os=os.protein_structure-translated-std


# UNIPROT target items objectstore

os.uniprot-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.uniprot-tgt-items-std.db=db.common-tgt-items
os.uniprot-tgt-items-std.missingTables=InterMineObject
os.uniprot-tgt-items-std.model=fulldata
os.uniprot-tgt-items-std.minBagTableSize=10000

osw.uniprot-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.uniprot-tgt-items.os=os.uniprot-tgt-items-std

os.uniprot-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.uniprot-tgt-items.os=os.uniprot-tgt-items-std
os.uniprot-tgt-items.model=fulldata

os.uniprot-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.uniprot-translated-std.model=genomic
os.uniprot-translated-std.os=os.uniprot-tgt-items
os.uniprot-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.uniprot-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.uniprot-translated.model=genomic
os.uniprot-translated.os=os.uniprot-translated-std

# GO DAG target items objectstore

os.go-dag-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.go-dag-tgt-items-std.db=db.common-tgt-items
os.go-dag-tgt-items-std.missingTables=InterMineObject
os.go-dag-tgt-items-std.model=fulldata
os.go-dag-tgt-items-std.minBagTableSize=10000

osw.go-dag-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.go-dag-tgt-items.os=os.go-dag-tgt-items-std

os.go-dag-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.go-dag-tgt-items.os=os.go-dag-tgt-items-std
os.go-dag-tgt-items.model=fulldata

os.go-dag-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.go-dag-translated-std.model=genomic
os.go-dag-translated-std.os=os.go-dag-tgt-items
os.go-dag-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.go-dag-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.go-dag-translated.model=genomic
os.go-dag-translated.os=os.go-dag-translated-std

# GO annotation target items objectstore

os.go-annotation-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.go-annotation-tgt-items-std.db=db.common-tgt-items
os.go-annotation-tgt-items-std.missingTables=InterMineObject
os.go-annotation-tgt-items-std.model=fulldata
os.go-annotation-tgt-items-std.minBagTableSize=10000

osw.go-annotation-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.go-annotation-tgt-items.os=os.go-annotation-tgt-items-std

os.go-annotation-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.go-annotation-tgt-items.os=os.go-annotation-tgt-items-std
os.go-annotation-tgt-items.model=fulldata

os.go-annotation-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.go-annotation-translated-std.model=genomic
os.go-annotation-translated-std.os=os.go-annotation-tgt-items
os.go-annotation-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.go-annotation-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.go-annotation-translated.model=genomic
os.go-annotation-translated.os=os.go-annotation-translated-std

#GFF3 target items objectstore

os.gff3-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.gff3-tgt-items-std.db=db.common-tgt-items
os.gff3-tgt-items-std.missingTables=InterMineObject
os.gff3-tgt-items-std.model=fulldata
os.gff3-tgt-items-std.minBagTableSize=10000

osw.gff3-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.gff3-tgt-items.os=os.gff3-tgt-items-std

os.gff3-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.gff3-tgt-items.os=os.gff3-tgt-items-std
os.gff3-tgt-items.model=fulldata

os.gff3-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.gff3-translated-std.model=genomic
os.gff3-translated-std.os=os.gff3-tgt-items
os.gff3-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.gff3-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.gff3-translated.model=genomic
os.gff3-translated.os=os.gff3-translated-std


# MAGE target items objectstore

os.mage-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.mage-tgt-items-std.db=db.common-tgt-items
os.mage-tgt-items-std.missingTables=InterMineObject
os.mage-tgt-items-std.model=fulldata
os.mage-tgt-items-std.minBagTableSize=10000

osw.mage-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.mage-tgt-items.os=os.mage-tgt-items-std

os.mage-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.mage-tgt-items.os=os.mage-tgt-items-std
os.mage-tgt-items.model=fulldata

os.mage-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.mage-translated-std.model=genomic
os.mage-translated-std.os=os.mage-tgt-items
os.mage-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.mage-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.mage-translated.model=genomic
os.mage-translated.os=os.mage-translated-std

# FLYREG target items objectstore

os.flyreg-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.flyreg-tgt-items-std.db=db.common-tgt-items
os.flyreg-tgt-items-std.missingTables=InterMineObject
os.flyreg-tgt-items-std.model=fulldata
os.flyreg-tgt-items-std.minBagTableSize=10000

osw.flyreg-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.flyreg-tgt-items.os=os.flyreg-tgt-items-std

os.flyreg-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.flyreg-tgt-items.os=os.flyreg-tgt-items-std
os.flyreg-tgt-items.model=fulldata

os.flyreg-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.flyreg-translated-std.model=genomic
os.flyreg-translated-std.os=os.flyreg-tgt-items
os.flyreg-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.flyreg-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.flyreg-translated.model=genomic
os.flyreg-translated.os=os.flyreg-translated-std

# TILING_PATH target items objectstore

os.tiling_path-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.tiling_path-tgt-items-std.db=db.common-tgt-items
os.tiling_path-tgt-items-std.missingTables=InterMineObject
os.tiling_path-tgt-items-std.model=fulldata
os.tiling_path-tgt-items-std.minBagTableSize=10000

osw.tiling_path-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.tiling_path-tgt-items.os=os.tiling_path-tgt-items-std

os.tiling_path-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.tiling_path-tgt-items.os=os.tiling_path-tgt-items-std
os.tiling_path-tgt-items.model=fulldata

os.tiling_path-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.tiling_path-translated-std.model=genomic
os.tiling_path-translated-std.os=os.tiling_path-tgt-items
os.tiling_path-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.tiling_path-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.tiling_path-translated.model=genomic
os.tiling_path-translated.os=os.tiling_path-translated-std

# LONG_OLIGO target items objectstore

os.long_oligo-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.long_oligo-tgt-items-std.db=db.common-tgt-items
os.long_oligo-tgt-items-std.missingTables=InterMineObject
os.long_oligo-tgt-items-std.model=fulldata
os.long_oligo-tgt-items-std.minBagTableSize=10000

osw.long_oligo-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.long_oligo-tgt-items.os=os.long_oligo-tgt-items-std

os.long_oligo-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.long_oligo-tgt-items.os=os.long_oligo-tgt-items-std
os.long_oligo-tgt-items.model=fulldata

os.long_oligo-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.long_oligo-translated-std.model=genomic
os.long_oligo-translated-std.os=os.long_oligo-tgt-items
os.long_oligo-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.long_oligo-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.long_oligo-translated.model=genomic
os.long_oligo-translated.os=os.long_oligo-translated-std

# DROSDEL target items objectstore

os.drosdel-tgt-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.drosdel-tgt-items-std.db=db.common-tgt-items
os.drosdel-tgt-items-std.missingTables=InterMineObject
os.drosdel-tgt-items-std.model=fulldata
os.drosdel-tgt-items-std.minBagTableSize=10000

osw.drosdel-tgt-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.drosdel-tgt-items.os=os.drosdel-tgt-items-std

os.drosdel-tgt-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.drosdel-tgt-items.os=os.drosdel-tgt-items-std
os.drosdel-tgt-items.model=fulldata

os.drosdel-translated-std.class=org.intermine.objectstore.translating.ObjectStoreTranslatingImpl
os.drosdel-translated-std.model=genomic
os.drosdel-translated-std.os=os.drosdel-tgt-items
os.drosdel-translated-std.translatorClass=org.intermine.dataconversion.ItemToObjectTranslator
os.drosdel-translated.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsForTranslatorImpl
os.drosdel-translated.model=genomic
os.drosdel-translated.os=os.drosdel-translated-std


##### SOURCE ITEMS DATABASES #####

# common source format items database
db.common-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.common-src-items.datasource.dataSourceName=db.common-src-items
#db.common-src-items.datasource.serverName=server_name
#db.common-src-items.datasource.databaseName=db_name
#db.common-src-items.datasource.user=user
#db.common-src-items.datasource.password=password
db.common-src-items.datasource.maxConnections=10
db.common-src-items.driver=org.postgresql.Driver
db.common-src-items.platform=PostgreSQL


# ensembl anopheles source format items

db.ensembl-anoph-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-anoph-src-items.datasource.dataSourceName=db.ensembl-anoph-src-items
#db.ensembl-anoph-src-items.datasource.serverName=server_name
#db.ensembl-anoph-src-items.datasource.databaseName=db_name
#db.ensembl-anoph-src-items.datasource.user=user
#db.ensembl-anoph-src-items.datasource.password=password
db.ensembl-anoph-src-items.datasource.maxConnections=10
db.ensembl-anoph-src-items.driver=org.postgresql.Driver
db.ensembl-anoph-src-items.platform=PostgreSQL

os.ensembl-anoph-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-anoph-src-items-std.db=db.ensembl-anoph-src-items
os.ensembl-anoph-src-items-std.missingTables=InterMineObject
os.ensembl-anoph-src-items-std.model=fulldata
os.ensembl-anoph-src-items-std.minBagTableSize=10000

os.ensembl-anoph-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-anoph-src-items.os=os.ensembl-anoph-src-items-std
os.ensembl-anoph-src-items.model=fulldata

osw.ensembl-anoph-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-anoph-src-items.os=os.ensembl-anoph-src-items-std


# ensembl drosophila source format items

db.ensembl-dros-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-dros-src-items.datasource.dataSourceName=db.ensembl-dros-src-items
#db.ensembl-dros-src-items.datasource.serverName=server_name
#db.ensembl-dros-src-items.datasource.databaseName=db_name
#db.ensembl-dros-src-items.datasource.user=user
#db.ensembl-dros-src-items.datasource.password=password
db.ensembl-dros-src-items.datasource.maxConnections=10
db.ensembl-dros-src-items.driver=org.postgresql.Driver
db.ensembl-dros-src-items.platform=PostgreSQL

os.ensembl-dros-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-dros-src-items-std.db=db.ensembl-dros-src-items
os.ensembl-dros-src-items-std.missingTables=InterMineObject
os.ensembl-dros-src-items-std.model=fulldata
os.ensembl-dros-src-items-std.minBagTableSize=10000

os.ensembl-dros-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-dros-src-items.os=os.ensembl-dros-src-items-std
os.ensembl-dros-src-items.model=fulldata

osw.ensembl-dros-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-dros-src-items.os=os.ensembl-dros-src-items-std


# ensembl human source format items

db.ensembl-human-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.ensembl-human-src-items.datasource.dataSourceName=db.ensembl-human-src-items
#db.ensembl-human-src-items.datasource.serverName=server_name
#db.ensembl-human-src-items.datasource.databaseName=db_name
#db.ensembl-human-src-items.datasource.user=user
#db.ensembl-human-src-items.datasource.password=password
db.ensembl-human-src-items.datasource.maxConnections=10
db.ensembl-human-src-items.driver=org.postgresql.Driver
db.ensembl-human-src-items.platform=PostgreSQL

os.ensembl-human-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.ensembl-human-src-items-std.db=db.ensembl-human-src-items
os.ensembl-human-src-items-std.missingTables=InterMineObject
os.ensembl-human-src-items-std.model=fulldata
os.ensembl-human-src-items-std.minBagTableSize=10000

os.ensembl-human-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.ensembl-human-src-items.os=os.ensembl-human-src-items-std
os.ensembl-human-src-items.model=fulldata

osw.ensembl-human-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.ensembl-human-src-items.os=os.ensembl-human-src-items-std

# chado source format items

db.chado-src-items.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.chado-src-items.datasource.dataSourceName=db.chado-src-items
#db.chado-src-items.datasource.serverName=server_name
#db.chado-src-items.datasource.databaseName=db_name
#db.chado-src-items.datasource.user=user
#db.chado-src-items.datasource.password=password
db.chado-src-items.datasource.maxConnections=10
db.chado-src-items.driver=org.postgresql.Driver
db.chado-src-items.platform=PostgreSQL

os.chado-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.chado-src-items-std.db=db.chado-src-items
os.chado-src-items-std.missingTables=InterMineObject
os.chado-src-items-std.model=fulldata
os.chado-src-items-std.minBagTableSize=10000

os.chado-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.chado-src-items.os=os.chado-src-items-std
os.chado-src-items.model=fulldata

osw.chado-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.chado-src-items.os=os.chado-src-items-std

# PSI source format items

os.psi-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.psi-src-items-std.db=db.common-src-items
os.psi-src-items-std.missingTables=InterMineObject
os.psi-src-items-std.model=fulldata
os.psi-src-items-std.minBagTableSize=10000

osw.psi-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.psi-src-items.os=os.psi-src-items-std

os.psi-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.psi-src-items.os=os.psi-src-items-std
os.psi-src-items.model=fulldata

# PROTEIN STRUCTURE source format items

os.protein_structure-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.protein_structure-src-items-std.db=db.common-src-items
os.protein_structure-src-items-std.missingTables=InterMineObject
os.protein_structure-src-items-std.model=fulldata
os.protein_structure-src-items-std.minBagTableSize=10000

osw.protein_structure-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.protein_structure-src-items.os=os.protein_structure-src-items-std

os.protein_structure-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.protein_structure-src-items.os=os.protein_structure-src-items-std
os.protein_structure-src-items.model=fulldata

# UNIPROT source format items

os.uniprot-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.uniprot-src-items-std.db=db.common-src-items
os.uniprot-src-items-std.missingTables=InterMineObject
os.uniprot-src-items-std.model=fulldata
os.uniprot-src-items-std.minBagTableSize=10000

osw.uniprot-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.uniprot-src-items.os=os.uniprot-src-items-std

os.uniprot-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.uniprot-src-items.os=os.uniprot-src-items-std
os.uniprot-src-items.model=fulldata

# MAGE source format items

os.mage-src-items-std.class=org.intermine.objectstore.intermine.ObjectStoreInterMineImpl
os.mage-src-items-std.db=db.common-src-items
os.mage-src-items-std.missingTables=InterMineObject
os.mage-src-items-std.model=fulldata
os.mage-src-items-std.minBagTableSize=10000

osw.mage-src-items.class=org.intermine.objectstore.intermine.ObjectStoreWriterInterMineImpl
osw.mage-src-items.os=os.mage-src-items-std

os.mage-src-items.class=org.intermine.objectstore.fastcollections.ObjectStoreFastCollectionsImpl
os.mage-src-items.os=os.mage-src-items-std
os.mage-src-items.model=fulldata


##### SOURCE DATABASES #####

# chado source database

db.chado.datasource.class=org.postgresql.jdbc3.Jdbc3PoolingDataSource
db.chado.datasource.dataSourceName=db.chado
#db.chado.datasource.serverName=server_name
#db.chado.datasource.databaseName=chado_db_name
#db.chado.datasource.user=user
#db.chado.datasource.password=password
db.chado.datasource.maxConnections=10
db.chado.driver=org.postgresql.Driver
db.chado.platform=PostgreSQL

# ensembl anopheles source database

db.ensembl-anopheles.datasource.class=com.mysql.jdbc.jdbc2.optional.MysqlConnectionPoolDataSource
db.ensembl-anopheles.datasource.dataSourceName=db.ensembl-anopheles
#db.ensembl-anopheles.datasource.serverName=server_name
#db.ensembl-anopheles.datasource.databaseName=anopheles_dbname
#db.ensembl-anopheles.datasource.user=user
#db.ensembl-anopheles.datasource.password=password
db.ensembl-anopheles.datasource.maxConnections=10
db.ensembl-anopheles.driver=com.mysql.jdbc.Driver
db.ensembl-anopheles.platform=MySQL

# ensembl drosophila source database

db.ensembl-drosophila.datasource.class=com.mysql.jdbc.jdbc2.optional.MysqlConnectionPoolDataSource
db.ensembl-drosophila.datasource.dataSourceName=db.ensembl-drosophila
#db.ensembl-drosophila.datasource.serverName=server_name
#db.ensembl-drosophila.datasource.databaseName=drosophila_dbname
#db.ensembl-drosophila.datasource.user=user
#db.ensembl-drosophila.datasource.password=password
db.ensembl-drosophila.datasource.maxConnections=10
db.ensembl-drosophila.driver=com.mysql.jdbc.Driver
db.ensembl-drosophila.platform=MySQL


# ensembl human source database

db.ensembl-human.datasource.class=com.mysql.jdbc.jdbc2.optional.MysqlConnectionPoolDataSource
db.ensembl-human.datasource.dataSourceName=db.ensembl-human
#db.ensembl-human.datasource.serverName=server_name
#db.ensembl-human.datasource.databaseName=human_dbname
#db.ensembl-human.datasource.user=user
#db.ensembl-human.datasource.password=password
db.ensembl-human.datasource.maxConnections=10
db.ensembl-human.driver=com.mysql.jdbc.Driver
db.ensembl-human.platform=MySQL


{'fraction_non_alphanumeric': 0.11769202349254074, 'fraction_numerical': 0.00675219446320054, 'mean_word_length': 7.035831285831286, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 4, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2491554', 'n_tokens_mistral': 30405, 'n_tokens_neox': 29134, 'n_words': 1533}