<commit_before>FROM nfcore/base
LABEL authors="<EMAIL>" \
      description="Docker image containing all requirements for the nfcore/chipseq pipeline"

COPY environment.yml /
RUN conda env create -f /environment.yml && conda clean -a
ENV PATH /opt/conda/envs/nf-core-chipseq-1.0dev/bin:$PATH<commit_msg>Add gawk to Docker container<commit_after>FROM nfcore/base
LABEL authors="<EMAIL>" \
      description="Docker image containing all requirements for the nfcore/chipseq pipeline"

## GAWK has the 'and' function, needed for run_spp.R script from phantompeakqualtools package
RUN apt-get update && apt-get install -y gawk && apt-get clean -y
RUN echo 'alias awk=gawk' >> ~/.bashrc

COPY environment.yml /
RUN conda env create -f /environment.yml && conda clean -a
ENV PATH /opt/conda/envs/nf-core-chipseq-1.0dev/bin:$PATH
{'fraction_non_alphanumeric': 0.10840438489646773, 'fraction_numerical': 0.0048721071863581, 'mean_word_length': 4.372549019607843, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 7, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5465260', 'n_tokens_mistral': 276, 'n_tokens_neox': 261, 'n_words': 84}