<commit_before><?xml version="1.0"?>
<classes>
  <class name="org.flymine.model.genomic.CDS" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene" reverse-reference="CDSs"/>
    <reference name="protein" referenced-type="org.flymine.model.genomic.Protein"/>
  </class>
  <class name="org.flymine.model.genomic.Gene" is-interface="true">
    <collection name="UTRs" referenced-type="org.flymine.model.genomic.UTR" reverse-reference="gene" ordered="true"/>
    <collection name="CDSs" referenced-type="org.flymine.model.genomic.CDS" reverse-reference="gene" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.InsertionSite" is-interface="true">
    <attribute name="organismDbId" type="java.lang.String"/>
    <collection name="genes" referenced-type="org.flymine.model.genomic.Gene" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.MRNA" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <attribute name="organismDbId" type="java.lang.String"/>
    <reference name="fivePrimeUTR" referenced-type="org.flymine.model.genomic.FivePrimeUTR"/>
    <reference name="threePrimeUTR" referenced-type="org.flymine.model.genomic.ThreePrimeUTR"/>
    <collection name="UTRs" referenced-type="org.flymine.model.genomic.UTR" reverse-reference="MRNAs" ordered="true"/>
    <collection name="cDNAClones" referenced-type="org.flymine.model.genomic.CDNAClone" reverse-reference="MRNA" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.Transcript" is-interface="true">
    <collection name="introns" referenced-type="org.flymine.model.genomic.Intron" reverse-reference="transcripts" ordered="true"/>
    <collection name="exons" referenced-type="org.flymine.model.genomic.Exon" reverse-reference="transcripts" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.NcRNA" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
  </class>
  <class name="org.flymine.model.genomic.Exon" is-interface="true">
    <attribute name="organismDbId" type="java.lang.String"/>
    <attribute name="symbol" type="java.lang.String"/>
    <collection name="transcripts" referenced-type="org.flymine.model.genomic.Transcript" reverse-reference="exons" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.Intron" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <collection name="transcripts" referenced-type="org.flymine.model.genomic.Transcript" reverse-reference="introns" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.UTR" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene" reverse-reference="UTRs"/>
    <collection name="MRNAs" referenced-type="org.flymine.model.genomic.MRNA" reverse-reference="UTRs" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.ThreePrimeUTR" is-interface="true">
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene"/>
  </class>
  <class name="org.flymine.model.genomic.FivePrimeUTR" is-interface="true">
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene"/>
  </class>
  <class name="org.flymine.model.genomic.Enhancer" is-interface="true">
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene"/>
  </class>
  <class name="org.flymine.model.genomic.TransposableElementInsertionSite" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <attribute name="organismDbId" type="java.lang.String"/>
  </class>
  <class name="org.flymine.model.genomic.TransposableElement" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <attribute name="organismDbId" type="java.lang.String"/>
  </class>
  <class name="org.flymine.model.genomic.SequenceVariant" is-interface="true">
    <collection name="genes" referenced-type="org.flymine.model.genomic.Gene" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.ProteinBindingSite" extends="org.flymine.model.genomic.BindingSite" is-interface="true">
  </class>
  <class name="org.flymine.model.genomic.Pseudogene" extends="org.flymine.model.genomic.Gene" is-interface="true">
  </class>
  <class name="org.flymine.model.genomic.Translation" extends="org.flymine.model.genomic.Polypeptide" is-interface="true">
    <attribute name="organismDbId" type="java.lang.String"/>
    <attribute name="symbol" type="java.lang.String"/>
  </class>
  <class name="org.flymine.model.genomic.Vector" extends="org.flymine.model.genomic.BioEntity"
         is-interface="true"/>
  <class name="org.flymine.model.genomic.BAC" extends="org.flymine.model.genomic.Vector"
         is-interface="true">
  </class>
  <class name="org.flymine.model.genomic.CDNAClone" is-interface="true">
    <reference name="MRNA" referenced-type="org.flymine.model.genomic.MRNA"/>
    <reference name="EST" referenced-type="org.flymine.model.genomic.EST"/>
  </class>
  <class name="org.flymine.model.genomic.EST" is-interface="true">
    <collection name="cDNAClones" referenced-type="org.flymine.model.genomic.CDNAClone" reverse-reference="EST"/>
  </class>
  <class name="org.flymine.model.genomic.ChromosomeArm"
         extends="org.flymine.model.genomic.LocatedSequenceFeature" is-interface="true">
  </class>
  <class name="org.flymine.model.genomic.TFmodule"
         extends="org.flymine.model.genomic.RegulatoryRegion" is-interface="true">
  </class>
</classes><commit_msg>Added `ChromosomalDeletion` to chado-db model.<commit_after><?xml version="1.0"?>
<classes>
  <class name="org.flymine.model.genomic.CDS" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene" reverse-reference="CDSs"/>
    <reference name="protein" referenced-type="org.flymine.model.genomic.Protein"/>
  </class>
  <class name="org.flymine.model.genomic.Gene" is-interface="true">
    <collection name="UTRs" referenced-type="org.flymine.model.genomic.UTR" reverse-reference="gene" ordered="true"/>
    <collection name="CDSs" referenced-type="org.flymine.model.genomic.CDS" reverse-reference="gene" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.InsertionSite" is-interface="true">
    <attribute name="organismDbId" type="java.lang.String"/>
    <collection name="genes" referenced-type="org.flymine.model.genomic.Gene" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.MRNA" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <attribute name="organismDbId" type="java.lang.String"/>
    <reference name="fivePrimeUTR" referenced-type="org.flymine.model.genomic.FivePrimeUTR"/>
    <reference name="threePrimeUTR" referenced-type="org.flymine.model.genomic.ThreePrimeUTR"/>
    <collection name="UTRs" referenced-type="org.flymine.model.genomic.UTR" reverse-reference="MRNAs" ordered="true"/>
    <collection name="cDNAClones" referenced-type="org.flymine.model.genomic.CDNAClone" reverse-reference="MRNA" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.Transcript" is-interface="true">
    <collection name="introns" referenced-type="org.flymine.model.genomic.Intron" reverse-reference="transcripts" ordered="true"/>
    <collection name="exons" referenced-type="org.flymine.model.genomic.Exon" reverse-reference="transcripts" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.NcRNA" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
  </class>
  <class name="org.flymine.model.genomic.Exon" is-interface="true">
    <attribute name="organismDbId" type="java.lang.String"/>
    <attribute name="symbol" type="java.lang.String"/>
    <collection name="transcripts" referenced-type="org.flymine.model.genomic.Transcript" reverse-reference="exons" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.Intron" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <collection name="transcripts" referenced-type="org.flymine.model.genomic.Transcript" reverse-reference="introns" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.UTR" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene" reverse-reference="UTRs"/>
    <collection name="MRNAs" referenced-type="org.flymine.model.genomic.MRNA" reverse-reference="UTRs" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.ThreePrimeUTR" is-interface="true">
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene"/>
  </class>
  <class name="org.flymine.model.genomic.FivePrimeUTR" is-interface="true">
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene"/>
  </class>
  <class name="org.flymine.model.genomic.Enhancer" is-interface="true">
    <reference name="gene" referenced-type="org.flymine.model.genomic.Gene"/>
  </class>
  <class name="org.flymine.model.genomic.TransposableElementInsertionSite" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <attribute name="organismDbId" type="java.lang.String"/>
  </class>
  <class name="org.flymine.model.genomic.TransposableElement" is-interface="true">
    <attribute name="symbol" type="java.lang.String"/>
    <attribute name="organismDbId" type="java.lang.String"/>
  </class>
  <class name="org.flymine.model.genomic.SequenceVariant" is-interface="true">
    <collection name="genes" referenced-type="org.flymine.model.genomic.Gene" ordered="true"/>
  </class>
  <class name="org.flymine.model.genomic.ProteinBindingSite" extends="org.flymine.model.genomic.BindingSite" is-interface="true">
  </class>
  <class name="org.flymine.model.genomic.Pseudogene" extends="org.flymine.model.genomic.Gene" is-interface="true">
  </class>
  <class name="org.flymine.model.genomic.Translation" extends="org.flymine.model.genomic.Polypeptide" is-interface="true">
    <attribute name="organismDbId" type="java.lang.String"/>
    <attribute name="symbol" type="java.lang.String"/>
  </class>
  <class name="org.flymine.model.genomic.Vector" extends="org.flymine.model.genomic.BioEntity"
         is-interface="true"/>
  <class name="org.flymine.model.genomic.BAC" extends="org.flymine.model.genomic.Vector"
         is-interface="true">
  </class>
  <class name="org.flymine.model.genomic.CDNAClone" is-interface="true">
    <reference name="MRNA" referenced-type="org.flymine.model.genomic.MRNA"/>
    <reference name="EST" referenced-type="org.flymine.model.genomic.EST"/>
  </class>
  <class name="org.flymine.model.genomic.EST" is-interface="true">
    <collection name="cDNAClones" referenced-type="org.flymine.model.genomic.CDNAClone" reverse-reference="EST"/>
  </class>
  <class name="org.flymine.model.genomic.ChromosomeArm"
         extends="org.flymine.model.genomic.LocatedSequenceFeature" is-interface="true">
  </class>
  <class name="org.flymine.model.genomic.TFmodule"
         extends="org.flymine.model.genomic.RegulatoryRegion" is-interface="true">
  </class>
  <class name="org.flymine.model.genomic.ChromosomalDeletion"
         extends="org.flymine.model.genomic.LocatedSequenceFeature"
         is-interface="true">
  </class>
</classes>
{'fraction_non_alphanumeric': 0.17701971732681906, 'fraction_numerical': 0.00034897923573547375, 'mean_word_length': 5.3542128603104215, 'pattern_counts': {'":': 0, '<': 179, '<?xml version=': 2, '>': 179, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '402394', 'n_tokens_mistral': 3857, 'n_tokens_neox': 3697, 'n_words': 488}