<commit_before>import glob
import sys
import os

import sphinx_bootstrap_theme

import skbio

# NOTE: parts of this file were taken from scipy's doc/source/conf.py. See
# scikit-bio/licenses/scipy.txt for scipy's license.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
sys.path.insert(0, os.path.abspath('../sphinxext/numpydoc'))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
needs_sphinx = '1.1'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.pngmath',
    'numpydoc',
    'sphinx.ext.coverage',
    'sphinx.ext.doctest',
    'sphinx.ext.autosummary'
]

# Determine if the matplotlib has a recent enough version of the
# plot_directive.<commit_msg>DOC: Replace pngtex with mathjax.<commit_after>import glob
import sys
import os

import sphinx_bootstrap_theme

import skbio

# NOTE: parts of this file were taken from scipy's doc/source/conf.py. See
# scikit-bio/licenses/scipy.txt for scipy's license.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
sys.path.insert(0, os.path.abspath('../sphinxext/numpydoc'))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
needs_sphinx = '1.1'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.mathjax',
    'numpydoc',
    'sphinx.ext.coverage',
    'sphinx.ext.doctest',
    'sphinx.ext.autosummary'
]

# Determine if the matplotlib has a recent enough version of the
# plot_directive.
{'fraction_non_alphanumeric': 0.1347708894878706, 'fraction_numerical': 0.0026954177897574125, 'mean_word_length': 3.2826923076923076, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5242257', 'n_tokens_mistral': 716, 'n_tokens_neox': 686, 'n_words': 241}