<commit_before>**************************************************
FM-AD Data Set
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About the FM-AD Data Set
------------------------

The `Foundation Medicine Adult Cancer Clinical <https://gdc.cancer.gov/about-gdc/contributed-genomic-data-cancer-research/foundation-medicine/foundation-medicine>`_ data set (FM-AD) consists of 18,004 unique solid tumor samples that underwent genomic profiling on a single uniform platform as part of standard clinical care. The data set is derived from the FoundationOne® genomic profiling assay version 2 that interrogates exonic regions of 287 cancer-related genes and selected introns from 19 genes known to undergo rearrangements in human cancer. For more information please `visit <https://gdc.cancer.gov/about-gdc/contributed-genomic-data-cancer-research/foundation-medicine/foundation-medicine>`_. 

The Data Use Agreement for Foundation Medicine can be found `here <https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?view_pdf&stacc=phs001179.v1.p1>`_. 

About the FM-AD Data
--------------------

The Genomic Data Commons (GDC) currently has VCF, TSV, and MAF data available. To see the GDC data portal with Foundation Medicine as program selected please select `here <https://portal.gdc.cancer.gov/repository?facetTab=files&filters=%7B%22op%22%3A%22and%22%2C%22content%22%3A%5B%7B%22op%22%3A%22in%22%2C%22content%22%3A%7B%22field%22%3A%22cases.project.program.name%22%2C%22value%22%3A%5B%22FM%22%5D%7D%7D%5D%7D&searchTableTab=cases>`_. For help on how to find the files in the Cloud Platform, please see the IndexD Access tutorial.

VCF: 36,008 files
TSV: 84 files
MAF: 42 files

Controlled Access: 36,050
Open Access: 84 files<commit_msg>Update FM-AD_about.rst<commit_after>**************************************************
FM-AD Data Set
**************************************************

About the FM-AD Data Set
------------------------

The `Foundation Medicine Adult Cancer Clinical <https://gdc.cancer.gov/about-gdc/contributed-genomic-data-cancer-research/foundation-medicine/foundation-medicine>`_ data set (FM-AD) consists of 18,004 unique solid tumor samples that underwent genomic profiling on a single uniform platform as part of standard clinical care. The data set is derived from the FoundationOne® genomic profiling assay version 2 that interrogates exonic regions of 287 cancer-related genes and selected introns from 19 genes known to undergo rearrangements in human cancer. For more information please `visit <https://gdc.cancer.gov/about-gdc/contributed-genomic-data-cancer-research/foundation-medicine/foundation-medicine>`_. 

The Data Use Agreement for Foundation Medicine can be found `here <https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?view_pdf&stacc=phs001179.v1.p1>`_. 

About the FM-AD Data
--------------------

The Genomic Data Commons (GDC) currently has VCF, TSV, and MAF data available. To see the GDC data portal with Foundation Medicine as program selected please select `here <https://portal.gdc.cancer.gov/repository?facetTab=files&filters=%7B%22op%22%3A%22and%22%2C%22content%22%3A%5B%7B%22op%22%3A%22in%22%2C%22content%22%3A%7B%22field%22%3A%22cases.project.program.name%22%2C%22value%22%3A%5B%22FM%22%5D%7D%7D%5D%7D&searchTableTab=cases>`_. Files can be found with in the ``isb-cgc.GDC_metadata`` tables in BigQuery or using IndexD.

There are 36,008 VCF files, 84 TSV files, and 42 MAF files available with 36,050 of them that are Controlled Access and 84 files which are Open Access.
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