<commit_before>Hugo_Symbol	Entrez_Gene_Id	Center	Tumor_Sample_Barcode	Verification_Status	Validation_Status	Mutation_Status	Sequencer	Chromosome	Start_position	End_position	Variant_Classification	HGVSp_Short	MA:FImpact	MA:link.MSA	MA:link.PDB
HSPG2		broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	22078087	22078087	Missense_Mutation	D820N	neutral	mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N	
CSMD2	114784	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	34085156	34085156	Missense_Mutation	V277I	low	mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I	mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I
CLSPN	63967	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	35989584	35989584	Missense_Mutation	F628L		mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L	
RSPO1	284654	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	37867916	37867916	Missense_Mutation	R2Q	low	mutationassessor.org/?cm=msa&ty=f&p=RSPO1_HUMAN&rb=1&re=150&var=R2Q	
SMAP2	64744	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	40646957	40646957	Missense_Mutation	A95T	medium	mutationassessor.org/?cm=msa&ty=f&p=SMAP2_HUMAN&rb=13&re=127&var=A95T	mutationassessor.org/pdb.php?prot=SMAP2_HUMAN&from=13&to=127&var=A95T
HPDL	84842	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	45565857	45565857	Silent	S150S	--	--	--
ZYG11B	79699	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	53009534	53009534	Missense_Mutation	E151K	low	mutationassessor.org/?cm=msa&ty=f&p=ZY11B_HUMAN&rb=6&re=304&var=E151K	
CCBL2	56267	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	89226604	89226604	Silent	R6R	--	--	--
OAZ3	51686	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	150005900	150005900	Missense_Mutation	P27S			
HRNR	388697	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	150452666	150452666	Missense_Mutation	L2688S	low	mutationassessor.org/?cm=msa&ty=f&p=HORN_HUMAN&rb=91&re=2799&var=L2688S	
TTC24	164118	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	154819467	154819467	Missense_Mutation	G27E		mutationassessor.org/?cm=msa&ty=f&p=TTC24_HUMAN&rb=306&re=352&var=G307E	
VANGL2	57216	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	158655985	158655985	Silent	T254T	--	--	--
ASTN1	460	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	175184979	175184979	Silent	D673D	--	--	--
FAM5C	339479	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	188334737	188334737	Silent	D445D	--	--	--
G0S2	50486	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	207915844	207915844	Silent	A64A	--	--	--
RD3	343035	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	LOH	Illumina GAIIx	chr1	209719152	209719152	Missense_Mutation	P146L	low	mutationassessor.org/?cm=msa&ty=f&p=RD3_HUMAN&rb=4&re=194&var=P146L	
KCNK2	3776	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	213412146	213412146	Missense_Mutation	A274S		mutationassessor.org/?cm=msa&ty=f&p=KCNK2_HUMAN&rb=233&re=313&var=A274S	
NLRP3	114548	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	245674681	245674681	Silent	G982G	--	--	--
CALML5	51806	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	5531064	5531064	Missense_Mutation	P113L		mutationassessor.org/?cm=msa&ty=f&p=CALL5_HUMAN&rb=78&re=113&var=P113L	mutationassessor.org/pdb.php?prot=CALL5_HUMAN&from=78&to=113&var=P113L
GDF10	2662	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	48048882	48048882	Missense_Mutation	R337H	low	mutationassessor.org/?cm=msa&ty=f&p=BMP3B_HUMAN&rb=240&re=372&var=R337H	
BICC1	80114	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Wildtype	Illumina GAIIx	chr10	59943055	59943055	Missense_Mutation	E49G	low	mutationassessor.org/?cm=msa&ty=f&p=BICC1_HUMAN&rb=1&re=200&var=E49G	
STOX1	219736	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	Wildtype	Illumina GAIIx	chr10	70315066	70315066	Missense_Mutation	R503Q		mutationassessor.org/?cm=msa&ty=f&p=STOX1_HUMAN&rb=391&re=590&var=R503Q	
DLG5	9231	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	79246430	79246430	Nonsense_Mutation	Q1304*	--	--	--
KIF20B	9585	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	91488328	91488328	Silent	E1210E	--	--	--
DOCK1	1793	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	129073144	129073144	Missense_Mutation	H1282R	low	mutationassessor.org/?cm=msa&ty=f&p=DOCK1_HUMAN&rb=1111&re=1616&var=H1282R	mutationassessor.org/pdb.php?prot=DOCK1_HUMAN&from=1111&to=1616&var=H1282R
SMPD1	6609	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	6369742	6369742	Intron	R291S	low	mutationassessor.org/?cm=msa&ty=f&p=ASM_HUMAN&rb=199&re=461&var=R289S	
OR10AG1	282770	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Somatic	Illumina GAIIx	chr11	55492179	55492179	Missense_Mutation	R113C	high	mutationassessor.org/?cm=msa&ty=f&p=O10AG_HUMAN&rb=32&re=281&var=R113C	mutationassessor.org/pdb.php?prot=O10AG_HUMAN&from=32&to=281&var=R113C
PRG2	5553	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	56913314	56913314	Missense_Mutation	E37D		mutationassessor.org/?cm=msa&ty=f&p=PRG2_HUMAN&rb=1&re=79&var=E37D	
SLC43A1	8501	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	57024895	57024895	Missense_Mutation	P133L	low	mutationassessor.org/?cm=msa&ty=f&p=LAT3_HUMAN&rb=70&re=493&var=P133L	
TMEM216	51259	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Somatic	Illumina GAIIx	chr11	60921958	60921958	Nonsense_Mutation	G61G	--	--	--
ACTN3	89	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	Somatic	Illumina GAIIx	chr11	66075660	66075660	Missense_Mutation	S116R	medium	mutationassessor.org/?cm=msa&ty=f&p=ACTN3_HUMAN&rb=46&re=149&var=S116R	mutationassessor.org/pdb.php?prot=ACTN3_HUMAN&from=46&to=149&var=S116R
NOX4	50507	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	88712884	88712884	Missense_Mutation	N481D	low	mutationassessor.org/?cm=msa&ty=f&p=NOX4_HUMAN&rb=423&re=518&var=N481D	
ATM	472	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	107719197	107719197	Nonsense_Mutation	W2769*	--	--	--
OR6M1	390261	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	123181892	123181892	Missense_Mutation	D126N	neutral	mutationassessor.org/?cm=msa&ty=f&p=OR6M1_HUMAN&rb=39&re=287&var=D126N	mutationassessor.org/pdb.php?prot=OR6M1_HUMAN&from=39&to=287&var=D126N
FAM118B	79607	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	125629514	125629514	Silent	N224N	--	--	--
GALNT8	26290	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	4744900	4744900	Missense_Mutation	A563V	neutral	mutationassessor.org/?cm=msa&ty=f&p=GALT8_HUMAN&rb=496&re=622&var=A563V	
VWF	7450	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	5965012	5965012	Silent	T2293T	--	--	--
CLEC7A	64581	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	Germline	Illumina GAIIx	chr12	10162443	10162443	Missense_Mutation	T209A	neutral	mutationassessor.org/?cm=msa&ty=f&p=CLC7A_HUMAN&rb=137&re=243&var=T209A	mutationassessor.org/pdb.php?prot=CLC7A_HUMAN&from=137&to=243&var=T209A
TAS2R10	50839	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Germline	Illumina GAIIx	chr12	10869904	10869904	Missense_Mutation	G78S	medium	mutationassessor.org/?cm=msa&ty=f&p=T2R10_HUMAN&rb=1&re=296&var=G78S	
GPR19	2842	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Germline	Illumina GAIIx	chr12	12706312	12706312	Nonsense_Mutation	L113P	high	mutationassessor.org/?cm=msa&ty=f&p=GPR19_HUMAN&rb=82&re=330&var=L113P	mutationassessor.org/pdb.php?prot=GPR19_HUMAN&from=82&to=330&var=L113P
SLC38A2	54407	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	Somatic	Illumina GAIIx	chr12	45042571	45042571	Missense_Mutation	T433A	low	mutationassessor.org/?cm=msa&ty=f&p=S38A2_HUMAN&rb=69&re=495&var=T433A	
KRT80	144501	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	50871906	50871906	Silent	C16C	--	--	--
SP1	6667	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Somatic	Illumina GAIIx	chr12	52063536	52063536	Missense_Mutation	A513V	low	mutationassessor.org/?cm=msa&ty=f&p=SP1_HUMAN&rb=401&re=600&var=A513V	
GPR84	53831	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	53043742	53043742	Missense_Mutation	R54Q	low	mutationassessor.org/?cm=msa&ty=f&p=GPR84_HUMAN&rb=37&re=370&var=R54Q	mutationassessor.org/pdb.php?prot=GPR84_HUMAN&from=37&to=370&var=R54Q
OR6C76	390326	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	54107010	54107010	Missense_Mutation	S236P	high	mutationassessor.org/?cm=msa&ty=f&p=O6C76_HUMAN&rb=39&re=287&var=S236P	
MSRB3	foo	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	63988657	63988657	Missense_Mutation	T11S	low	mutationassessor.org/?cm=msa&ty=f&p=MSRB3_HUMAN&rb=1&re=39&var=T11S	
C12orf63	374467	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	95674368	95674368	Silent	G1039G	--	--	--
DTX1	1840	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	111999661	111999661	Silent	P103P	--	--	--
CLIP1	6249	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	121387222	121387222	Silent	Q815Q	--	--	--
DNAH10	196385	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	122969231	122969231	Missense_Mutation	R3645Q		mutationassessor.org/?cm=msa&ty=f&p=DYH10_HUMAN&rb=3590&re=3756&var=R3645Q	
TUBA3C	7278	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	18650431	18650431	Silent	I110I	--	--	--
POSTN	10631	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	37062595	37062595	Missense_Mutation	A119T	medium	mutationassessor.org/?cm=msa&ty=f&p=POSTN_HUMAN&rb=109&re=232&var=A119T	mutationassessor.org/pdb.php?prot=POSTN_HUMAN&from=109&to=232&var=A119T
NHLRC3	387921	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	38519992	38519992	Missense_Mutation	A325P	low	mutationassessor.org/?cm=msa&ty=f&p=NHLC3_HUMAN&rb=241&re=347&var=A325P	
UTP14C	9724	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	51501877	51501877	Silent	A312A	--	--	--
TBC1D4	9882	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	74834235	74834235	Silent	R336R	--	--	--
OR4M1	441670	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	19318932	19318932	Missense_Mutation	G204V	medium	mutationassessor.org/?cm=msa&ty=f&p=OR4M1_HUMAN&rb=41&re=289&var=G204V	
HEATR5A	25938	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	30926191	30926191	Missense_Mutation	R66C	low	mutationassessor.org/?cm=msa&ty=f&p=HTR5A_HUMAN&rb=243&re=791&var=R353C	
INSM2	84684	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	35074753	35074753	Missense_Mutation	G515V	low	mutationassessor.org/?cm=msa&ty=f&p=INSM2_HUMAN&rb=401&re=566&var=G515V	
SPTLC2	9517	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	77048441	77048441	Missense_Mutation	R543L		mutationassessor.org/?cm=msa&ty=f&p=SPTC2_HUMAN&rb=529&re=562&var=R543L	
C14orf102	55051	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	89826682	89826682	Missense_Mutation	Q622R	low	mutationassessor.org/?cm=msa&ty=f&p=CN102_HUMAN&rb=545&re=744&var=Q622R	
COX8C	341947	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	92883440	92883440	Missense_Mutation	A25T			
RTL1	388015	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	100417938	100417938	Missense_Mutation	V981I	low	mutationassessor.org/?cm=msa&ty=f&p=RTL1_HUMAN&rb=934&re=1133&var=V982I	
AHNAK2	113146	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	104483308	104483308	Silent	A3175A	--	--	--
MAGEL2	54551	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	21441891	21441891	Missense_Mutation	G698R		mutationassessor.org/?cm=msa&ty=f&p=Q2M1Q7_HUMAN&rb=1&re=200&var=G40R	
SCG3	29106	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	49762877	49762877	Silent	I117I	--	--	--
UNC13C	440279	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	52095297	52095297	Missense_Mutation	R969C		mutationassessor.org/?cm=msa&ty=f&p=UN13C_HUMAN&rb=801&re=1000&var=R969C	
NTRK3	4916	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	86479593	86479593	Missense_Mutation	R316H		mutationassessor.org/?cm=msa&ty=f&p=NTRK3_HUMAN&rb=309&re=382&var=R316H	mutationassessor.org/pdb.php?prot=NTRK3_HUMAN&from=309&to=382&var=R316H
LASS3	204219	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	98842359	98842359	Missense_Mutation	T109M		mutationassessor.org/?cm=msa&ty=f&p=LASS3_HUMAN&rb=71&re=126&var=T109M	mutationassessor.org/pdb.php?prot=LASS3_HUMAN&from=71&to=126&var=T109M
SBK1	388228	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	28239033	28239033	Missense_Mutation	R189C	low	mutationassessor.org/?cm=msa&ty=f&p=SBK1_HUMAN&rb=53&re=315&var=R189C	mutationassessor.org/pdb.php?prot=SBK1_HUMAN&from=53&to=315&var=R189C
ZNF423	23090	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	48227850	48227850	Missense_Mutation	R905Q	low	mutationassessor.org/?cm=msa&ty=f&p=ZN423_HUMAN&rb=761&re=960&var=R905Q	mutationassessor.org/pdb.php?prot=ZN423_HUMAN&from=761&to=960&var=R905Q
GPR97	222487	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	56271941	56271941	Silent	T264T	--	--	--
CDH8	1006	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	60409002	60409002	Missense_Mutation	E387Q	high	mutationassessor.org/?cm=msa&ty=f&p=CADH8_HUMAN&rb=277&re=391&var=E387Q	
CDH8	1006	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	60412422	60412422	Missense_Mutation	S311L	low	mutationassessor.org/?cm=msa&ty=f&p=CADH8_HUMAN&rb=281&re=383&var=S311L	mutationassessor.org/pdb.php?prot=CADH8_HUMAN&from=281&to=383&var=S311L
KCTD19	146212	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	65883102	65883102	Silent	T786T	--	--	--
COX4I1	1327	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	84396941	84396941	Missense_Mutation	A115T	medium	mutationassessor.org/?cm=msa&ty=f&p=COX41_HUMAN&rb=26&re=169&var=A115T	mutationassessor.org/pdb.php?prot=COX41_HUMAN&from=26&to=169&var=A115T
ANKRD11	29123	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	87874034	87874034	Silent	P2139P	--	--	--
C17orf97	400566	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	263542	263542	Missense_Mutation	R198W	low	mutationassessor.org/?cm=msa&ty=f&p=CQ097_HUMAN&rb=1&re=200&var=R198W	
PROCA1	147011	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	24054918	24054918	Missense_Mutation	E266K	low	mutationassessor.org/?cm=msa&ty=f&p=PRCA1_HUMAN&rb=138&re=337&var=E294K	
LPO	4025	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	53698597	53698597	Missense_Mutation	R535H	medium	mutationassessor.org/?cm=msa&ty=f&p=PERL_HUMAN&rb=138&re=684&var=R535H	mutationassessor.org/pdb.php?prot=PERL_HUMAN&from=138&to=684&var=R535H
RAD51C	5889	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	54156429	54156429	Missense_Mutation	R312W	high	mutationassessor.org/?cm=msa&ty=f&p=RA51C_HUMAN&rb=78&re=350&var=R312W	mutationassessor.org/pdb.php?prot=RA51C_HUMAN&from=78&to=350&var=R312W
KCNH6	81033	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	58966962	58966962	Silent	I434I	--	--	--
SDK2	54549	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	68926986	68926986	Silent	S700S	--	--	--
PPP4R1	9989	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr18	9539240	9539240	Nonsense_Mutation	R882*	--	--	--
RFX2	5990	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	5991251	5991251	Nonsense_Mutation	R88*	--	--	--
RAB11B	9230	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	8370842	8370842	Missense_Mutation	V46M	high	mutationassessor.org/?cm=msa&ty=f&p=RB11B_HUMAN&rb=13&re=174&var=V46M	mutationassessor.org/pdb.php?prot=RB11B_HUMAN&from=13&to=174&var=V46M
COL5A3	50509	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	9952774	9952774	Missense_Mutation	R832Q	medium	mutationassessor.org/?cm=msa&ty=f&p=CO5A3_HUMAN&rb=801&re=1000&var=R832Q	mutationassessor.org/pdb.php?prot=CO5A3_HUMAN&from=801&to=1000&var=R832Q
SLC44A2	57153	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	10603577	10603577	Silent	L220L	--	--	--
ZNF682	91120	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	19979011	19979011	Silent	L100L	--	--	--
ZNF536	9745	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	35626761	35626761	Missense_Mutation	T151M	high	mutationassessor.org/?cm=msa&ty=f&p=ZN536_HUMAN&rb=1&re=200&var=T151M	mutationassessor.org/pdb.php?prot=ZN536_HUMAN&from=1&to=200&var=T151M
CCDC123	84902	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	38064667	38064667	Nonsense_Mutation	Y686*	--	--	--
SLC7A10	56301	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	38395621	38395621	Missense_Mutation	R162W	medium	mutationassessor.org/?cm=msa&ty=f&p=AAA1_HUMAN&rb=45&re=462&var=R162W	mutationassessor.org/pdb.php?prot=AAA1_HUMAN&from=45&to=462&var=R162W
NPHS1	4868	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	41030847	41030847	Missense_Mutation	T459N	low	mutationassessor.org/?cm=msa&ty=f&p=NPHN_HUMAN&rb=444&re=538&var=T459N	mutationassessor.org/pdb.php?prot=NPHN_HUMAN&from=444&to=538&var=T459N
DHX34	9704	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	52568703	52568703	Silent	R670R	--	--	--
HAS1	3036	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	56911364	56911364	Missense_Mutation	R340W	high	mutationassessor.org/?cm=msa&ty=f&p=HAS1_HUMAN&rb=223&re=389&var=R340W	
LAIR1	3903	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	59558713	59558713	Silent	T280T	--	--	--
ZFP28	140612	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	61753285	61753285	Missense_Mutation	R242H		mutationassessor.org/?cm=msa&ty=f&p=ZFP28_HUMAN&rb=232&re=268&var=R242H	
ZNF135	7694	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	63264769	63264769	Missense_Mutation	T27A	medium	mutationassessor.org/?cm=msa&ty=f&p=ZN135_HUMAN&rb=14&re=54&var=T15A	mutationassessor.org/pdb.php?prot=ZN135_HUMAN&from=14&to=54&var=T15A
CRIM1	51232	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr2	36560219	36560219	Missense_Mutation	R417Q	low	mutationassessor.org/?cm=msa&ty=f&p=CRIM1_HUMAN&rb=403&re=456&var=R417Q	
ATP6V1B1	525	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr2	71043881	71043881	Missense_Mutation	R331W	high	mutationassessor.org/?cm=msa&ty=f&p=VATB1_HUMAN&rb=166&re=393&var=R331W	mutationassessor.org/pdb.php?prot=VATB1_HUMAN&from=166&to=393&var=R331W<commit_msg>added extra scenario with invalid negative entrez<commit_after>Hugo_Symbol	Entrez_Gene_Id	Center	Tumor_Sample_Barcode	Verification_Status	Validation_Status	Mutation_Status	Sequencer	Chromosome	Start_position	End_position	Variant_Classification	HGVSp_Short	MA:FImpact	MA:link.MSA	MA:link.PDB
HSPG2		broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	22078087	22078087	Missense_Mutation	D820N	neutral	mutationassessor.org/?cm=msa&ty=f&p=PGBM_HUMAN&rb=814&re=869&var=D820N	
CSMD2	-114784	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	34085156	34085156	Missense_Mutation	V277I	low	mutationassessor.org/?cm=msa&ty=f&p=CSMD2_HUMAN&rb=202&re=303&var=V277I	mutationassessor.org/pdb.php?prot=CSMD2_HUMAN&from=202&to=303&var=V277I
CLSPN	63967	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	35989584	35989584	Missense_Mutation	F628L		mutationassessor.org/?cm=msa&ty=f&p=CLSPN_HUMAN&rb=601&re=800&var=F628L	
RSPO1	284654	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	37867916	37867916	Missense_Mutation	R2Q	low	mutationassessor.org/?cm=msa&ty=f&p=RSPO1_HUMAN&rb=1&re=150&var=R2Q	
SMAP2	64744	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	40646957	40646957	Missense_Mutation	A95T	medium	mutationassessor.org/?cm=msa&ty=f&p=SMAP2_HUMAN&rb=13&re=127&var=A95T	mutationassessor.org/pdb.php?prot=SMAP2_HUMAN&from=13&to=127&var=A95T
HPDL	84842	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	45565857	45565857	Silent	S150S	--	--	--
ZYG11B	79699	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	53009534	53009534	Missense_Mutation	E151K	low	mutationassessor.org/?cm=msa&ty=f&p=ZY11B_HUMAN&rb=6&re=304&var=E151K	
CCBL2	56267	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	89226604	89226604	Silent	R6R	--	--	--
OAZ3	51686	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	150005900	150005900	Missense_Mutation	P27S			
HRNR	388697	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	150452666	150452666	Missense_Mutation	L2688S	low	mutationassessor.org/?cm=msa&ty=f&p=HORN_HUMAN&rb=91&re=2799&var=L2688S	
TTC24	164118	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	154819467	154819467	Missense_Mutation	G27E		mutationassessor.org/?cm=msa&ty=f&p=TTC24_HUMAN&rb=306&re=352&var=G307E	
VANGL2	57216	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	158655985	158655985	Silent	T254T	--	--	--
ASTN1	460	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	175184979	175184979	Silent	D673D	--	--	--
FAM5C	339479	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	188334737	188334737	Silent	D445D	--	--	--
G0S2	50486	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	207915844	207915844	Silent	A64A	--	--	--
RD3	343035	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	LOH	Illumina GAIIx	chr1	209719152	209719152	Missense_Mutation	P146L	low	mutationassessor.org/?cm=msa&ty=f&p=RD3_HUMAN&rb=4&re=194&var=P146L	
KCNK2	3776	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	213412146	213412146	Missense_Mutation	A274S		mutationassessor.org/?cm=msa&ty=f&p=KCNK2_HUMAN&rb=233&re=313&var=A274S	
NLRP3	114548	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr1	245674681	245674681	Silent	G982G	--	--	--
CALML5	51806	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	5531064	5531064	Missense_Mutation	P113L		mutationassessor.org/?cm=msa&ty=f&p=CALL5_HUMAN&rb=78&re=113&var=P113L	mutationassessor.org/pdb.php?prot=CALL5_HUMAN&from=78&to=113&var=P113L
GDF10	2662	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	48048882	48048882	Missense_Mutation	R337H	low	mutationassessor.org/?cm=msa&ty=f&p=BMP3B_HUMAN&rb=240&re=372&var=R337H	
BICC1	80114	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Wildtype	Illumina GAIIx	chr10	59943055	59943055	Missense_Mutation	E49G	low	mutationassessor.org/?cm=msa&ty=f&p=BICC1_HUMAN&rb=1&re=200&var=E49G	
STOX1	219736	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	Wildtype	Illumina GAIIx	chr10	70315066	70315066	Missense_Mutation	R503Q		mutationassessor.org/?cm=msa&ty=f&p=STOX1_HUMAN&rb=391&re=590&var=R503Q	
DLG5	9231	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	79246430	79246430	Nonsense_Mutation	Q1304*	--	--	--
KIF20B	9585	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	91488328	91488328	Silent	E1210E	--	--	--
DOCK1	1793	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr10	129073144	129073144	Missense_Mutation	H1282R	low	mutationassessor.org/?cm=msa&ty=f&p=DOCK1_HUMAN&rb=1111&re=1616&var=H1282R	mutationassessor.org/pdb.php?prot=DOCK1_HUMAN&from=1111&to=1616&var=H1282R
SMPD1	6609	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	6369742	6369742	Intron	R291S	low	mutationassessor.org/?cm=msa&ty=f&p=ASM_HUMAN&rb=199&re=461&var=R289S	
OR10AG1	282770	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Somatic	Illumina GAIIx	chr11	55492179	55492179	Missense_Mutation	R113C	high	mutationassessor.org/?cm=msa&ty=f&p=O10AG_HUMAN&rb=32&re=281&var=R113C	mutationassessor.org/pdb.php?prot=O10AG_HUMAN&from=32&to=281&var=R113C
PRG2	5553	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	56913314	56913314	Missense_Mutation	E37D		mutationassessor.org/?cm=msa&ty=f&p=PRG2_HUMAN&rb=1&re=79&var=E37D	
SLC43A1	8501	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	57024895	57024895	Missense_Mutation	P133L	low	mutationassessor.org/?cm=msa&ty=f&p=LAT3_HUMAN&rb=70&re=493&var=P133L	
TMEM216	51259	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Somatic	Illumina GAIIx	chr11	60921958	60921958	Nonsense_Mutation	G61G	--	--	--
ACTN3	89	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	Somatic	Illumina GAIIx	chr11	66075660	66075660	Missense_Mutation	S116R	medium	mutationassessor.org/?cm=msa&ty=f&p=ACTN3_HUMAN&rb=46&re=149&var=S116R	mutationassessor.org/pdb.php?prot=ACTN3_HUMAN&from=46&to=149&var=S116R
NOX4	50507	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	88712884	88712884	Missense_Mutation	N481D	low	mutationassessor.org/?cm=msa&ty=f&p=NOX4_HUMAN&rb=423&re=518&var=N481D	
ATM	472	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	107719197	107719197	Nonsense_Mutation	W2769*	--	--	--
OR6M1	390261	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	123181892	123181892	Missense_Mutation	D126N	neutral	mutationassessor.org/?cm=msa&ty=f&p=OR6M1_HUMAN&rb=39&re=287&var=D126N	mutationassessor.org/pdb.php?prot=OR6M1_HUMAN&from=39&to=287&var=D126N
FAM118B	79607	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr11	125629514	125629514	Silent	N224N	--	--	--
GALNT8	26290	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	4744900	4744900	Missense_Mutation	A563V	neutral	mutationassessor.org/?cm=msa&ty=f&p=GALT8_HUMAN&rb=496&re=622&var=A563V	
VWF	7450	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	5965012	5965012	Silent	T2293T	--	--	--
CLEC7A	64581	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	Germline	Illumina GAIIx	chr12	10162443	10162443	Missense_Mutation	T209A	neutral	mutationassessor.org/?cm=msa&ty=f&p=CLC7A_HUMAN&rb=137&re=243&var=T209A	mutationassessor.org/pdb.php?prot=CLC7A_HUMAN&from=137&to=243&var=T209A
TAS2R10	50839	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Germline	Illumina GAIIx	chr12	10869904	10869904	Missense_Mutation	G78S	medium	mutationassessor.org/?cm=msa&ty=f&p=T2R10_HUMAN&rb=1&re=296&var=G78S	
GPR19	2842	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Germline	Illumina GAIIx	chr12	12706312	12706312	Nonsense_Mutation	L113P	high	mutationassessor.org/?cm=msa&ty=f&p=GPR19_HUMAN&rb=82&re=330&var=L113P	mutationassessor.org/pdb.php?prot=GPR19_HUMAN&from=82&to=330&var=L113P
SLC38A2	54407	broad.mit.edu	TCGA-AA-3664-01	Unknown	Unknown	Somatic	Illumina GAIIx	chr12	45042571	45042571	Missense_Mutation	T433A	low	mutationassessor.org/?cm=msa&ty=f&p=S38A2_HUMAN&rb=69&re=495&var=T433A	
KRT80	144501	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	50871906	50871906	Silent	C16C	--	--	--
SP1	6667	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Somatic	Illumina GAIIx	chr12	52063536	52063536	Missense_Mutation	A513V	low	mutationassessor.org/?cm=msa&ty=f&p=SP1_HUMAN&rb=401&re=600&var=A513V	
GPR84	53831	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	53043742	53043742	Missense_Mutation	R54Q	low	mutationassessor.org/?cm=msa&ty=f&p=GPR84_HUMAN&rb=37&re=370&var=R54Q	mutationassessor.org/pdb.php?prot=GPR84_HUMAN&from=37&to=370&var=R54Q
OR6C76	390326	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	54107010	54107010	Missense_Mutation	S236P	high	mutationassessor.org/?cm=msa&ty=f&p=O6C76_HUMAN&rb=39&re=287&var=S236P	
MSRB3	foo	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	63988657	63988657	Missense_Mutation	T11S	low	mutationassessor.org/?cm=msa&ty=f&p=MSRB3_HUMAN&rb=1&re=39&var=T11S	
C12orf63	374467	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	95674368	95674368	Silent	G1039G	--	--	--
DTX1	1840	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	111999661	111999661	Silent	P103P	--	--	--
CLIP1	6249	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	121387222	121387222	Silent	Q815Q	--	--	--
DNAH10	196385	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr12	122969231	122969231	Missense_Mutation	R3645Q		mutationassessor.org/?cm=msa&ty=f&p=DYH10_HUMAN&rb=3590&re=3756&var=R3645Q	
TUBA3C	7278	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	18650431	18650431	Silent	I110I	--	--	--
POSTN	10631	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	37062595	37062595	Missense_Mutation	A119T	medium	mutationassessor.org/?cm=msa&ty=f&p=POSTN_HUMAN&rb=109&re=232&var=A119T	mutationassessor.org/pdb.php?prot=POSTN_HUMAN&from=109&to=232&var=A119T
NHLRC3	387921	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	38519992	38519992	Missense_Mutation	A325P	low	mutationassessor.org/?cm=msa&ty=f&p=NHLC3_HUMAN&rb=241&re=347&var=A325P	
UTP14C	9724	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	51501877	51501877	Silent	A312A	--	--	--
TBC1D4	9882	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr13	74834235	74834235	Silent	R336R	--	--	--
OR4M1	441670	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	19318932	19318932	Missense_Mutation	G204V	medium	mutationassessor.org/?cm=msa&ty=f&p=OR4M1_HUMAN&rb=41&re=289&var=G204V	
HEATR5A	25938	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	30926191	30926191	Missense_Mutation	R66C	low	mutationassessor.org/?cm=msa&ty=f&p=HTR5A_HUMAN&rb=243&re=791&var=R353C	
INSM2	84684	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	35074753	35074753	Missense_Mutation	G515V	low	mutationassessor.org/?cm=msa&ty=f&p=INSM2_HUMAN&rb=401&re=566&var=G515V	
SPTLC2	9517	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	77048441	77048441	Missense_Mutation	R543L		mutationassessor.org/?cm=msa&ty=f&p=SPTC2_HUMAN&rb=529&re=562&var=R543L	
C14orf102	55051	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	89826682	89826682	Missense_Mutation	Q622R	low	mutationassessor.org/?cm=msa&ty=f&p=CN102_HUMAN&rb=545&re=744&var=Q622R	
COX8C	341947	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	92883440	92883440	Missense_Mutation	A25T			
RTL1	388015	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	100417938	100417938	Missense_Mutation	V981I	low	mutationassessor.org/?cm=msa&ty=f&p=RTL1_HUMAN&rb=934&re=1133&var=V982I	
AHNAK2	113146	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr14	104483308	104483308	Silent	A3175A	--	--	--
MAGEL2	54551	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	21441891	21441891	Missense_Mutation	G698R		mutationassessor.org/?cm=msa&ty=f&p=Q2M1Q7_HUMAN&rb=1&re=200&var=G40R	
SCG3	29106	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	49762877	49762877	Silent	I117I	--	--	--
UNC13C	440279	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	52095297	52095297	Missense_Mutation	R969C		mutationassessor.org/?cm=msa&ty=f&p=UN13C_HUMAN&rb=801&re=1000&var=R969C	
NTRK3	4916	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	86479593	86479593	Missense_Mutation	R316H		mutationassessor.org/?cm=msa&ty=f&p=NTRK3_HUMAN&rb=309&re=382&var=R316H	mutationassessor.org/pdb.php?prot=NTRK3_HUMAN&from=309&to=382&var=R316H
LASS3	204219	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr15	98842359	98842359	Missense_Mutation	T109M		mutationassessor.org/?cm=msa&ty=f&p=LASS3_HUMAN&rb=71&re=126&var=T109M	mutationassessor.org/pdb.php?prot=LASS3_HUMAN&from=71&to=126&var=T109M
SBK1	388228	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	28239033	28239033	Missense_Mutation	R189C	low	mutationassessor.org/?cm=msa&ty=f&p=SBK1_HUMAN&rb=53&re=315&var=R189C	mutationassessor.org/pdb.php?prot=SBK1_HUMAN&from=53&to=315&var=R189C
ZNF423	23090	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	48227850	48227850	Missense_Mutation	R905Q	low	mutationassessor.org/?cm=msa&ty=f&p=ZN423_HUMAN&rb=761&re=960&var=R905Q	mutationassessor.org/pdb.php?prot=ZN423_HUMAN&from=761&to=960&var=R905Q
GPR97	222487	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	56271941	56271941	Silent	T264T	--	--	--
CDH8	1006	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	60409002	60409002	Missense_Mutation	E387Q	high	mutationassessor.org/?cm=msa&ty=f&p=CADH8_HUMAN&rb=277&re=391&var=E387Q	
CDH8	1006	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	60412422	60412422	Missense_Mutation	S311L	low	mutationassessor.org/?cm=msa&ty=f&p=CADH8_HUMAN&rb=281&re=383&var=S311L	mutationassessor.org/pdb.php?prot=CADH8_HUMAN&from=281&to=383&var=S311L
KCTD19	146212	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	65883102	65883102	Silent	T786T	--	--	--
COX4I1	1327	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	84396941	84396941	Missense_Mutation	A115T	medium	mutationassessor.org/?cm=msa&ty=f&p=COX41_HUMAN&rb=26&re=169&var=A115T	mutationassessor.org/pdb.php?prot=COX41_HUMAN&from=26&to=169&var=A115T
ANKRD11	29123	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr16	87874034	87874034	Silent	P2139P	--	--	--
C17orf97	400566	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	263542	263542	Missense_Mutation	R198W	low	mutationassessor.org/?cm=msa&ty=f&p=CQ097_HUMAN&rb=1&re=200&var=R198W	
PROCA1	147011	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	24054918	24054918	Missense_Mutation	E266K	low	mutationassessor.org/?cm=msa&ty=f&p=PRCA1_HUMAN&rb=138&re=337&var=E294K	
LPO	4025	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	53698597	53698597	Missense_Mutation	R535H	medium	mutationassessor.org/?cm=msa&ty=f&p=PERL_HUMAN&rb=138&re=684&var=R535H	mutationassessor.org/pdb.php?prot=PERL_HUMAN&from=138&to=684&var=R535H
RAD51C	5889	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	54156429	54156429	Missense_Mutation	R312W	high	mutationassessor.org/?cm=msa&ty=f&p=RA51C_HUMAN&rb=78&re=350&var=R312W	mutationassessor.org/pdb.php?prot=RA51C_HUMAN&from=78&to=350&var=R312W
KCNH6	81033	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	58966962	58966962	Silent	I434I	--	--	--
SDK2	54549	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr17	68926986	68926986	Silent	S700S	--	--	--
PPP4R1	9989	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr18	9539240	9539240	Nonsense_Mutation	R882*	--	--	--
RFX2	5990	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	5991251	5991251	Nonsense_Mutation	R88*	--	--	--
RAB11B	9230	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	8370842	8370842	Missense_Mutation	V46M	high	mutationassessor.org/?cm=msa&ty=f&p=RB11B_HUMAN&rb=13&re=174&var=V46M	mutationassessor.org/pdb.php?prot=RB11B_HUMAN&from=13&to=174&var=V46M
COL5A3	50509	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	9952774	9952774	Missense_Mutation	R832Q	medium	mutationassessor.org/?cm=msa&ty=f&p=CO5A3_HUMAN&rb=801&re=1000&var=R832Q	mutationassessor.org/pdb.php?prot=CO5A3_HUMAN&from=801&to=1000&var=R832Q
SLC44A2	57153	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	10603577	10603577	Silent	L220L	--	--	--
ZNF682	91120	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	19979011	19979011	Silent	L100L	--	--	--
ZNF536	9745	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	35626761	35626761	Missense_Mutation	T151M	high	mutationassessor.org/?cm=msa&ty=f&p=ZN536_HUMAN&rb=1&re=200&var=T151M	mutationassessor.org/pdb.php?prot=ZN536_HUMAN&from=1&to=200&var=T151M
CCDC123	84902	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	38064667	38064667	Nonsense_Mutation	Y686*	--	--	--
SLC7A10	56301	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	38395621	38395621	Missense_Mutation	R162W	medium	mutationassessor.org/?cm=msa&ty=f&p=AAA1_HUMAN&rb=45&re=462&var=R162W	mutationassessor.org/pdb.php?prot=AAA1_HUMAN&from=45&to=462&var=R162W
NPHS1	4868	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	41030847	41030847	Missense_Mutation	T459N	low	mutationassessor.org/?cm=msa&ty=f&p=NPHN_HUMAN&rb=444&re=538&var=T459N	mutationassessor.org/pdb.php?prot=NPHN_HUMAN&from=444&to=538&var=T459N
DHX34	9704	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	52568703	52568703	Silent	R670R	--	--	--
HAS1	3036	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	56911364	56911364	Missense_Mutation	R340W	high	mutationassessor.org/?cm=msa&ty=f&p=HAS1_HUMAN&rb=223&re=389&var=R340W	
LAIR1	3903	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	59558713	59558713	Silent	T280T	--	--	--
ZFP28	140612	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	61753285	61753285	Missense_Mutation	R242H		mutationassessor.org/?cm=msa&ty=f&p=ZFP28_HUMAN&rb=232&re=268&var=R242H	
ZNF135	7694	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr19	63264769	63264769	Missense_Mutation	T27A	medium	mutationassessor.org/?cm=msa&ty=f&p=ZN135_HUMAN&rb=14&re=54&var=T15A	mutationassessor.org/pdb.php?prot=ZN135_HUMAN&from=14&to=54&var=T15A
CRIM1	51232	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr2	36560219	36560219	Missense_Mutation	R417Q	low	mutationassessor.org/?cm=msa&ty=f&p=CRIM1_HUMAN&rb=403&re=456&var=R417Q	
ATP6V1B1	525	broad.mit.edu	TCGA-AA-3664-01	Unknown	valid	Unknown	Illumina GAIIx	chr2	71043881	71043881	Missense_Mutation	R331W	high	mutationassessor.org/?cm=msa&ty=f&p=VATB1_HUMAN&rb=166&re=393&var=R331W	mutationassessor.org/pdb.php?prot=VATB1_HUMAN&from=166&to=393&var=R331W
{'fraction_non_alphanumeric': 0.09650270700228364, 'fraction_numerical': 0.21322454006619967, 'mean_word_length': 6.474875335634829, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6954904', 'n_tokens_mistral': 24243, 'n_tokens_neox': 19290, 'n_words': 3085}