<commit_before>=====
Peaks
=====

This page summarizes the :term:`peaks` that have been called with the
various peak callers. 

Peaks here refer to intervals arising from the detection of point binding factors, such as classical transcription factors.

Number of intervals
===================

The following figure shows the number of intervals per set:

.. report:: Intervals.PeaksSummary
   :render: interleaved-bar-plot
   :transform: filter
   :tf-fields: nintervals

   Number of intervals in all runs

The following table presents the number of intervals and 
the average interval width per set:

.. report:: Intervals.PeaksSummary
   :render: table

   Number of intervals and lengths of intervals in
   all runs

Interval sizes
===============

The following figure shows the average interval length per set:

.. report:: Intervals.PeaksSummary
   :render: interleaved-bar-plot
   :transform: filter
   :tf-fields: avg(length)

   Average interval length

The following plot shows the distribution of the interval size for each set.

.. report:: Intervals.PeaksLengths
   :render: line-plot
   :transform: histogram
   :logscale: x
   :tf-aggregate: normalized-total
   :as-lines:

   Distribution of interval lengths

Distribution of peak scores
===========================
<commit_msg>Interval summary table now has its own tracker<commit_after>=====
Peaks
=====

This page summarizes the :term:`peaks` that have been called with the
various peak callers. 

Peaks here refer to intervals arising from the detection of point binding factors, such as classical transcription factors.

Number of intervals
===================

The following figure shows the number of intervals per set:

.. report:: Intervals.PeaksSummary
   :render: interleaved-bar-plot
   :transform: filter
   :tf-fields: nintervals

   Number of intervals in all runs

The following table presents the number of intervals and 
the average interval width per set:

.. report:: Intervals.PeaksSummaryTable
   :render: table

   Number of intervals and lengths of intervals in
   all runs

Interval sizes
===============

The following figure shows the average interval length per set:

.. report:: Intervals.PeaksSummary
   :render: interleaved-bar-plot
   :transform: filter
   :tf-fields: avg(length)

   Average interval length

The following plot shows the distribution of the interval size for each set.

.. report:: Intervals.PeaksLengths
   :render: line-plot
   :transform: histogram
   :logscale: x
   :tf-aggregate: normalized-total
   :as-lines:

   Distribution of interval lengths

Distribution of peak scores
===========================

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