<commit_before>{% set name = "PathwayMatcher" %}
{% set version = "1.8" %}
# Do not forget to update the version string in the pathwaymatcher.py file

about:
    home: https://github.com/LuisFranciscoHS/PathwayMatcher
    license: Apache License, Version 2.0
    summary: |
        PathwayMatcher is a software tool writen in Java to search for pathways related to a list of proteins in Reactome.
package:
    name: pathwaymatcher
    version: {{ version }}

build:
  noarch: generic
  number: 1

source:
    url: https://github.com/LuisFranciscoHS/PathwayMatcher/releases/download/v{{ version }}/{{ name }}.jar
    sha256: d7dea346a911f1ca66adbeb59a8e7903e1779157323604818ad67ddbc64ec507

requirements:
  build:
  run:
    - openjdk >=6
    - python

test:
    commands:
      - echo -e "CFTR\nTGFB1\nFCGR2A\nDCTN4\nSCNN1B\nSCNN1G\nSCNN1A\nTNFRSF1A\nCLCA4\nSTX1A\nCXCL8" > genes.txt
      - pathwaymatcher src.main.java.no.uib.pap.pathwaymatcher.PathwayMatcher -t GENE -i genes.txt
      - pathwaymatcher.py -t GENE -i genes.txt

extra:
  notes: |
    PathwayMatcher is Java program that comes with a custom wrapper shell script.
    By default
    "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can
    specify these values directly after your binaries. If you have _JAVA_OPTIONS
    set globally this will take precedence.
    For example run it with "java -Xms512m -Xmx1g -jar PathwayMatcher.jar"<commit_msg>Pathwaymatcher: updated to v1.8.1 (#9720)<commit_after>{% set name = "PathwayMatcher" %}
{% set version = "1.8.1" %}
# Do not forget to update the version string in the pathwaymatcher.py file

about:
    home: https://github.com/LuisFranciscoHS/PathwayMatcher
    license: Apache License, Version 2.0
    summary: |
        PathwayMatcher is a software tool writen in Java to search for pathways related to a list of proteins in Reactome.
package:
    name: pathwaymatcher
    version: {{ version }}

build:
  noarch: generic
  number: 1

source:
    url: https://github.com/LuisFranciscoHS/PathwayMatcher/releases/download/v{{ version }}/{{ name }}.jar
    sha256: cb432aca7da02a7ec815b43c043209fe28621344a55478cfa753ef2468333c92

requirements:
  build:
  run:
    - openjdk >=6
    - python

test:
    commands:
      - echo -e "CFTR\nTGFB1\nFCGR2A\nDCTN4\nSCNN1B\nSCNN1G\nSCNN1A\nTNFRSF1A\nCLCA4\nSTX1A\nCXCL8" > genes.txt
      - pathwaymatcher src.main.java.no.uib.pap.pathwaymatcher.PathwayMatcher -t GENE -i genes.txt
      - pathwaymatcher.py -t GENE -i genes.txt

extra:
  notes: |
    PathwayMatcher is Java program that comes with a custom wrapper shell script.
    By default
    "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can
    specify these values directly after your binaries. If you have _JAVA_OPTIONS
    set globally this will take precedence.
    For example run it with "java -Xms512m -Xmx1g -jar PathwayMatcher.jar"
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