<commit_before>{% set name = "trinity" %}
{% set version = "2.4.0" %}

package:
  name: {{ name|lower }}
  version: {{ version }}

build:
  number: 3
  skip: True  # [osx]

source:
  fn: {{ name|lower }}_{{ version }}.tar.gz
  url: https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v{{ version }}.tar.gz
  md5: 397cc93d75701ec681ea7af1a7837ed8
  patches:
    - makefile.clean.patch
    - trinity-plugins.makefile.clean.patch

requirements:
  build:
    - autoconf
    - automake
    - collectl
    - fastool
    - gcc
    - jellyfish >=2.2.6
    - openjdk
    - parafly
    - perl-app-cpanminus
    - perl-file-find-rule
    - perl-module-build
    - samtools >=1.3
    - slclust
    - trimmomatic >=0.36
    - zlib

  run:
    - bowtie
    - bowtie2
    - collectl
    - fastool
    - jellyfish >=2.2.6
    - libgcc<commit_msg>Add minimum version 2.3.0 to bowtie2 requirement for Trinity<commit_after>{% set name = "trinity" %}
{% set version = "2.4.0" %}

package:
  name: {{ name|lower }}
  version: {{ version }}

build:
  number: 4
  skip: True  # [osx]

source:
  fn: {{ name|lower }}_{{ version }}.tar.gz
  url: https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v{{ version }}.tar.gz
  md5: 397cc93d75701ec681ea7af1a7837ed8
  patches:
    - makefile.clean.patch
    - trinity-plugins.makefile.clean.patch

requirements:
  build:
    - autoconf
    - automake
    - collectl
    - fastool
    - gcc
    - jellyfish >=2.2.6
    - openjdk
    - parafly
    - perl-app-cpanminus
    - perl-file-find-rule
    - perl-module-build
    - samtools >=1.3
    - slclust
    - trimmomatic >=0.36
    - zlib

  run:
    - bowtie
    - bowtie2 >=2.3.0
    - collectl
    - fastool
    - jellyfish >=2.2.6
    - libgcc
{'fraction_non_alphanumeric': 0.14277489925158318, 'fraction_numerical': 0.046632124352331605, 'mean_word_length': 2.16, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 12, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7288111', 'n_tokens_mistral': 740, 'n_tokens_neox': 690, 'n_words': 128}