<commit_before>FROM ubuntu:18.04

MAINTAINER <NAME> <<EMAIL>>
 
RUN export DEBIAN_FRONTEND=noninteractive && apt update && apt -y install r-base python3 python3-pip bedtools git wget default-jre && apt-get clean
RUN pip3 install cython regex pysam numpy scipy
RUN R -e "install.packages('ada', repos = 'http://cran.rstudio.com/')"
RUN cd /opt/ && wget https://www.dropbox.com/s/wbcy4egca3ersl3/GATK-3.4-open-3.1.0-SNAPSHOT.tar && tar -xvf GATK-3.4-open-3.1.0-SNAPSHOT.tar && rm GATK-3.4-open-3.1.0-SNAPSHOT.tar && ln -s GATK-3.4-open-3.1.0-SNAPSHOT GATK<commit_msg>dockerfile<commit_after>FROM ubuntu:18.04

MAINTAINER <NAME> <<EMAIL>>
 
RUN export DEBIAN_FRONTEND=noninteractive && apt update && apt -y install r-base python3 python3-pip bedtools git wget openjdk-8-jdk && apt-get clean
RUN pip3 install cython regex pysam numpy scipy
RUN R -e "install.packages('ada', repos = 'http://cran.rstudio.com/')"
RUN cd /opt/ && wget https://www.dropbox.com/s/wbcy4egca3ersl3/GATK-3.4-open-3.1.0-SNAPSHOT.tar && tar -xvf GATK-3.4-open-3.1.0-SNAPSHOT.tar && rm GATK-3.4-open-3.1.0-SNAPSHOT.tar && ln -s GATK-3.4-open-3.1.0-SNAPSHOT GATK
{'fraction_non_alphanumeric': 0.16386182462356066, 'fraction_numerical': 0.054030115146147036, 'mean_word_length': 3.8706896551724137, 'pattern_counts': {'":': 0, '<': 9, '<?xml version=': 0, '>': 9, 'https://': 2, 'lorem ipsum': 0, 'www.': 2, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6414016', 'n_tokens_mistral': 515, 'n_tokens_neox': 501, 'n_words': 99}