<commit_before>import {IServerConfig} from "./IAppConfig";

const ServerConfigDefaults: Partial<IServerConfig> = {
    app_version:"1.0",
    api_cache_limit:450,
    disabled_tabs:"",
    genomenexus_url:"v1.genomenexus.org",
    g2s_url:"https://g2s.genomenexus.org",
    mycancergenome_show:false,

    digital_slide_archive_iframe_url:"https://cancer.digitalslidearchive.org/index.html?patientId=",
    digital_slide_archive_meta_url:"https://api.digitalslidearchive.org/api/v1/tcga/image?caseName=",

    mdacc_heatmap_patient_url: "https://bioinformatics.mdanderson.org/participant2maps?participant=",
    mdacc_heatmap_study_meta_url: "https://bioinformatics.mdanderson.org/study2url?studyid=",
    mdacc_heatmap_study_url: "https:// bioinformatics.mdanderson.org/TCGA/NGCHMPortal/?",

    mygene_info_url: "https://mygene.info/v3/gene/<%= entrezGeneId %>?fields=uniprot",

    oncoprint_oncokb_default:true,
    oncoprint_hotspots_default:true,
    oncoprint_hide_vus_default:false,
    oncokb_public_api_url:"oncokb.org/api/v1",

    pubmed_url: "https://www.ncbi.nlm.nih.gov/pubmed/<%=pmid%>",

    isoformOverrideSource:"uniprot",
    show_hotspot:true,
    show_oncokb:true,
    show_civic:false,
    skin_description:"The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets",
    show_genomenexus:true,
    skin_authorization_message:"Access to this portal is only available to authorized users.",
    skin_documentation_about:"About-Us.md",
    skin_documentation_baseurl:"https://raw.githubusercontent.com/cBioPortal/cbioportal/master/docs/",
    skin_documentation_markdown:true,
    skin_email_contact:"<EMAIL>",
    skin_documentation_faq:"FAQ.md",
    skin_login_saml_registration_html:"Sign in with MSK",
    skin_documentation_news:"News.md",
    skin_documentation_oql:"Onco-Query-Language.md",
    skin_query_max_tree_depth:"3",
    skin_right_nav_show_data_sets:true,
    skin_right_nav_show_examples:true,
    skin_right_nav_show_testimonials:true,
    skin_right_nav_show_whats_new:true,
    skin_citation_rule_text:"Please cite: <a href=\"http://cancerdiscovery.aacrjournals.org/content/2/5/401.abstract\" target=\"_blank\">Cerami et al., 2012</a> &amp; <a href=\"http://www.ncbi.nlm.nih.gov/pubmed/23550210\" target=\"_blank\">Gao et al., 2013</a>",
    skin_show_about_tab:true,
    skin_show_data_tab:true,
    skin_show_faqs_tab:true,
    skin_show_news_tab:true,
    skin_show_r_matlab_tab:true,
    skin_show_tools_tab:true,
    skin_show_web_api_tab:true,
    skin_show_tweet_button:false,
    skin_show_tissue_image_tab:true,
    quick_search_enabled: false,
    default_cross_cancer_study_list:
        "laml_tcga_pan_can_atlas_2018,acc_tcga_pan_can_atlas_2018,blca_tcga_pan_can_atlas_2018," +
        "lgg_tcga_pan_can_atlas_2018,brca_tcga_pan_can_atlas_2018,cesc_tcga_pan_can_atlas_2018,chol_tcga_pan_can_atlas_2018," +
        "coadread_tcga_pan_can_atlas_2018,dlbc_tcga_pan_can_atlas_2018,esca_tcga_pan_can_atlas_2018,gbm_tcga_pan_can_atlas_2018," +
        "hnsc_tcga_pan_can_atlas_2018,kich_tcga_pan_can_atlas_2018,kirc_tcga_pan_can_atlas_2018,kirp_tcga_pan_can_atlas_2018," +
        "lihc_tcga_pan_can_atlas_2018,luad_tcga_pan_can_atlas_2018,lusc_tcga_pan_can_atlas_2018,meso_tcga_pan_can_atlas_2018," +
        "ov_tcga_pan_can_atlas_2018,paad_tcga_pan_can_atlas_2018,pcpg_tcga_pan_can_atlas_2018,prad_tcga_pan_can_atlas_2018," +
        "sarc_tcga_pan_can_atlas_2018,skcm_tcga_pan_can_atlas_2018,stad_tcga_pan_can_atlas_2018," +
        "tgct_tcga_pan_can_atlas_2018,thym_tcga_pan_can_atlas_2018,thca_tcga_pan_can_atlas_2018,ucs_tcga_pan_can_atlas_2018," +
        "ucec_tcga_pan_can_atlas_2018,uvm_tcga_pan_can_atlas_2018",
    default_cross_cancer_study_list_name: "TCGA PanCancer Atlas studies",
    skin_title:"cBioPortal for Cancer Genomics",

    skin_blurb:`The cBioPortal for Cancer Genomics provides 
        <b>visualization</b>, <b>analysis</b> and <b>download</b> of large-scale cancer genomics data sets.
        <p><b>Please cite</b> <a href=\"http://www.ncbi.nlm.nih.gov/pubmed/23550210\">Gao 
        et al. <i>Sci. Signal.</i> 2013</a> &amp; 
        <a href=\"http://cancerdiscovery.aacrjournals.org/content/2/5/401.abstract\">
        Cerami et al. <i>Cancer Discov.</i> 2012</a> when publishing results based on cBioPortal.</p>`,

    skin_data_sets_footer:`Data sets of TCGA studies were downloaded from Broad 
            Firehose (http://gdac.broadinstitute.org) and updated monthly. In some studies, data sets were from the 
            TCGA working groups directly.`,
    skin_data_sets_header:`The portal currently contains data from the following 
            cancer genomics studies.  The table below lists the number of available samples per data type and tumor.`,

    skin_example_study_queries: `tcga pancancer atlas\n
                                     tcga provisional\n
                                     tcga -provisional -pancancer\n
                                     tcga or icgc\n
                                     msk-impact\n
                                     -\"cell line\"\n
                                     breast\n<commit_msg>Remove skin.blurb (homepage text) default in frontend<commit_after>import {IServerConfig} from "./IAppConfig";

const ServerConfigDefaults: Partial<IServerConfig> = {
    app_version:"1.0",
    api_cache_limit:450,
    disabled_tabs:"",
    genomenexus_url:"v1.genomenexus.org",
    g2s_url:"https://g2s.genomenexus.org",
    mycancergenome_show:false,

    digital_slide_archive_iframe_url:"https://cancer.digitalslidearchive.org/index.html?patientId=",
    digital_slide_archive_meta_url:"https://api.digitalslidearchive.org/api/v1/tcga/image?caseName=",

    mdacc_heatmap_patient_url: "https://bioinformatics.mdanderson.org/participant2maps?participant=",
    mdacc_heatmap_study_meta_url: "https://bioinformatics.mdanderson.org/study2url?studyid=",
    mdacc_heatmap_study_url: "https:// bioinformatics.mdanderson.org/TCGA/NGCHMPortal/?",

    mygene_info_url: "https://mygene.info/v3/gene/<%= entrezGeneId %>?fields=uniprot",

    oncoprint_oncokb_default:true,
    oncoprint_hotspots_default:true,
    oncoprint_hide_vus_default:false,
    oncokb_public_api_url:"oncokb.org/api/v1",

    pubmed_url: "https://www.ncbi.nlm.nih.gov/pubmed/<%=pmid%>",

    isoformOverrideSource:"uniprot",
    show_hotspot:true,
    show_oncokb:true,
    show_civic:false,
    skin_description:"The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets",
    show_genomenexus:true,
    skin_authorization_message:"Access to this portal is only available to authorized users.",
    skin_documentation_about:"About-Us.md",
    skin_documentation_baseurl:"https://raw.githubusercontent.com/cBioPortal/cbioportal/master/docs/",
    skin_documentation_markdown:true,
    skin_email_contact:"cbioportal at googlegroups dot com",
    skin_documentation_faq:"FAQ.md",
    skin_login_saml_registration_html:"Sign in with MSK",
    skin_documentation_news:"News.md",
    skin_documentation_oql:"Onco-Query-Language.md",
    skin_query_max_tree_depth:"3",
    skin_right_nav_show_data_sets:true,
    skin_right_nav_show_examples:true,
    skin_right_nav_show_testimonials:true,
    skin_right_nav_show_whats_new:true,
    skin_citation_rule_text:"Please cite: <a href=\"http://cancerdiscovery.aacrjournals.org/content/2/5/401.abstract\" target=\"_blank\">Cerami et al., 2012</a> &amp; <a href=\"http://www.ncbi.nlm.nih.gov/pubmed/23550210\" target=\"_blank\">Gao et al., 2013</a>",
    skin_show_about_tab:true,
    skin_show_data_tab:true,
    skin_show_faqs_tab:true,
    skin_show_news_tab:true,
    skin_show_r_matlab_tab:true,
    skin_show_tools_tab:true,
    skin_show_web_api_tab:true,
    skin_show_tweet_button:false,
    skin_show_tissue_image_tab:true,
    quick_search_enabled: false,
    default_cross_cancer_study_list:
        "laml_tcga_pan_can_atlas_2018,acc_tcga_pan_can_atlas_2018,blca_tcga_pan_can_atlas_2018," +
        "lgg_tcga_pan_can_atlas_2018,brca_tcga_pan_can_atlas_2018,cesc_tcga_pan_can_atlas_2018,chol_tcga_pan_can_atlas_2018," +
        "coadread_tcga_pan_can_atlas_2018,dlbc_tcga_pan_can_atlas_2018,esca_tcga_pan_can_atlas_2018,gbm_tcga_pan_can_atlas_2018," +
        "hnsc_tcga_pan_can_atlas_2018,kich_tcga_pan_can_atlas_2018,kirc_tcga_pan_can_atlas_2018,kirp_tcga_pan_can_atlas_2018," +
        "lihc_tcga_pan_can_atlas_2018,luad_tcga_pan_can_atlas_2018,lusc_tcga_pan_can_atlas_2018,meso_tcga_pan_can_atlas_2018," +
        "ov_tcga_pan_can_atlas_2018,paad_tcga_pan_can_atlas_2018,pcpg_tcga_pan_can_atlas_2018,prad_tcga_pan_can_atlas_2018," +
        "sarc_tcga_pan_can_atlas_2018,skcm_tcga_pan_can_atlas_2018,stad_tcga_pan_can_atlas_2018," +
        "tgct_tcga_pan_can_atlas_2018,thym_tcga_pan_can_atlas_2018,thca_tcga_pan_can_atlas_2018,ucs_tcga_pan_can_atlas_2018," +
        "ucec_tcga_pan_can_atlas_2018,uvm_tcga_pan_can_atlas_2018",
    default_cross_cancer_study_list_name: "TCGA PanCancer Atlas studies",
    skin_title:"cBioPortal for Cancer Genomics",

    skin_data_sets_footer:`Data sets of TCGA studies were downloaded from Broad 
            Firehose (http://gdac.broadinstitute.org) and updated monthly. In some studies, data sets were from the 
            TCGA working groups directly.`,
    skin_data_sets_header:`The portal currently contains data from the following 
            cancer genomics studies.  The table below lists the number of available samples per data type and tumor.`,

    skin_example_study_queries: `tcga pancancer atlas\n
                                     tcga provisional\n
                                     tcga -provisional -pancancer\n
                                     tcga or icgc\n
                                     msk-impact\n
                                     -\"cell line\"\n
                                     breast\n
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