<commit_before># These settings are all the required settings for the pyPaSWAS software 
# This file is read by default and should be overridden by using command-line
# arguments and / or a configuration file specified with '--configfile' 
[General]
out_file=output
out_format=TXT
loglevel=DEBUG
program=palindrome
filetype1=fasta
filetype2=fasta
override_output=T

[Input]
start_query=0
end_query=0
start_target=0
end_target=0
sequence_step=100000000
query_step=1000000

[Aligner]
gap_score=-3
match_score=3
mismatch_score=-4
other_score=-1
any_score=0
matrix_name=DNA-RNA
highest_score=3
lower_limit_score=1.0
minimum_score=30

[Filter]
filter_factor=0.01
query_coverage=0.01
query_identity=0.01
relative_score=0.01
base_score=1.0

[Mapper]
maximum_distance=0.06
qgram=4
compressed_index=T
reads_to_process=30
fraction_of_seeds=0.01

[Palindrome]
query_coverage_slice=0.98
minimum_read_length=50

[GraphDatabase]
hostname=localhost<commit_msg>Set settings back to default<commit_after># These settings are all the required settings for the pyPaSWAS software 
# This file is read by default and should be overridden by using command-line
# arguments and / or a configuration file specified with '--configfile' 
[General]
out_file=output
out_format=TXT
loglevel=DEBUG
program=palindrome
filetype1=fasta
filetype2=fasta
override_output=T

[Input]
start_query=0
end_query=0
start_target=0
end_target=0
sequence_step=100000000
query_step=1000000

[Aligner]
gap_score=-5
match_score=5
mismatch_score=-3
other_score=-1
any_score=0
matrix_name=DNA-RNA
highest_score=5
lower_limit_score=1.0
minimum_score=30

[Filter]
filter_factor=0.2
query_coverage=0.2
query_identity=0.2
relative_score=2.0
base_score=2.0

[Mapper]
maximum_distance=0.06
qgram=4
compressed_index=T
reads_to_process=30
fraction_of_seeds=0.01

[Palindrome]
query_coverage_slice=0.98
minimum_read_length=50

[GraphDatabase]
hostname=localhost
{'fraction_non_alphanumeric': 0.0778537611783272, 'fraction_numerical': 0.06102051551814834, 'mean_word_length': 8.014218009478673, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 2, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3492826', 'n_tokens_mistral': 757, 'n_tokens_neox': 694, 'n_words': 155}