<commit_before>{% set version = "2.12.0" %}
{% set sha256 = "5f00c918804a4e0cbe7dd8c61963058841f2104a01c58fc34bc19a0cc8c1a763" %}

package:
  name: gridss
  version: '{{ version }}'

source:
  url: https://github.com/PapenfussLab/gridss/releases/download/v{{ version }}/gridss-{{ version }}.tar.gz
  sha256: '{{ sha256 }}'

build:
  number: 0
  skip: True # [osx]

requirements:
  build:
    #- autoconf
    - make
    - {{ compiler('c') }}
  host:
    - ncurses
    - zlib
    - htslib >=1.10
  run:
    - ncurses
    - zlib
    - openjdk >=8
    - bwa >=0.7
    - samtools >=1.10
    - htslib >=1.10
    - kraken2 >=2.1
    - repeatmasker >=4.1.1
    - entrez-direct
    - r-base >=4.0
    - r-argparser
    - r-tidyverse
    - r-testthat
    - r-stringdist
    - bioconductor-structuralvariantannotation >=1.6

test:<commit_msg>[ci skip] Merge PR 29220<commit_after>{% set version = "2.12.0" %}
{% set sha256 = "5f00c918804a4e0cbe7dd8c61963058841f2104a01c58fc34bc19a0cc8c1a763" %}

package:
  name: gridss
  version: '{{ version }}'

source:
  url: https://github.com/PapenfussLab/gridss/releases/download/v{{ version }}/gridss-{{ version }}.tar.gz
  sha256: '{{ sha256 }}'

build:
  number: 1
  skip: True # [osx]

requirements:
  build:
    #- autoconf
    - make
    - {{ compiler('c') }}
  host:
    - ncurses
    - zlib
    - htslib >=1.10
  run:
    - ncurses
    - zlib
    - openjdk >=8
    - bwa >=0.7
    - samtools >=1.10
    - htslib >=1.10
    - kraken2 >=2.1
    - repeatmasker >=4.1.1
    - entrez-direct
    - r-base >=4.0
    - r-argparser
    - r-tidyverse
    - r-testthat
    - r-stringdist
    - bioconductor-structuralvariantannotation >=1.6
    - bcftools

test:
{'fraction_non_alphanumeric': 0.1593601895734597, 'fraction_numerical': 0.09537914691943128, 'mean_word_length': 2.2732558139534884, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 21, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6685089', 'n_tokens_mistral': 799, 'n_tokens_neox': 721, 'n_words': 128}