<commit_before>.. _index:

===================================================================================
qiprofile - The *Qu*\ antitative *I*\ maging *P*\ rofile (*QuIP*\ ) web application
===================================================================================

********
Synopsis
********

The *Qu*\ antitative *I*\ maging *P*\ rofile (*QuIP*\ ) web application displays
imaging and clinical data for the `OHSU QIN Sharepoint`_ study.

:Git: github.com/ohsu-qin/qiprofile


************
Feature List
************

1. OHSU QIN patient MR visualization.

2. ROI capture.

3. Clincial annotation editor.

4. qipipe_ pharmokinetic modeling result display.


************
Installation
************

1. Download npm_.

2. Run the following in a console from the ``qiprofile`` directory
   (omit the ``--production`` flag for a development installation)::

       npm install --production

See the `Developer Guide`_ for installing a development project.


*****
Usage
*****

Run the following command to start the production server::

     ./bin/qiprofile

See the `Developer Guide`_ for starting a development server.

---------

.. container:: copyright

  Copyright (C) 2014 Oregon Health & Science University `Knight Cancer Institute`_.
  See the license_ for permissions.


.. Targets:

.. _Developer Guide: https://github.com/ohsu-qin/qiprofile/blob/master/development.rst

.. _Git: http://www.git-scm.com

.. _Knight Cancer Institute: http://www.ohsu.edu/xd/health/services/cancer<commit_msg>Reference the GitHub dev doc.<commit_after>.. _index:

===================================================================================
qiprofile - The *Qu*\ antitative *I*\ maging *P*\ rofile (*QuIP*\ ) web application
===================================================================================

********
Synopsis
********

The *Qu*\ antitative *I*\ maging *P*\ rofile (*QuIP*\ ) web application displays
medical imaging and clinical data. The intent is to visualize the correlation of
imaging analysis biomarkers with clinical outcomes.


************
Feature List
************

1. OHSU QIN patient MR visualization.

2. ROI capture.

3. Clincial annotation editor.

4. qipipe_ pharmokinetic modeling result display.


************
Installation
************

1. Download npm_.

2. Run the following in a console from the ``qiprofile`` directory
   (omit the ``--production`` flag for a development installation)::

       npm install --production

See the `Developer Guide`_ for installing a development project.


*****
Usage
*****

Run the following command to start the production server::

     ./bin/qiprofile

See the `Developer Guide`_ for starting a development server.

---------

.. container:: copyright

  Copyright (C) 2014 Oregon Health & Science University `Knight Cancer Institute`_.
  See the license_ for permissions. Please note that qiprofile is research software
  which is neither approved nor recommended for clinical use.


.. Targets:

.. _Developer Guide: https://github.com/ohsu-qin/qiprofile/blob/master/doc/development.rst

.. _Git: http://www.git-scm.com

.. _Knight Cancer Institute: http://www.ohsu.edu/xd/health/services/cancer
{'fraction_non_alphanumeric': 0.23743718592964824, 'fraction_numerical': 0.00628140703517588, 'mean_word_length': 4.281923714759536, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 2, 'lorem ipsum': 0, 'www.': 4, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 8, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '598934', 'n_tokens_mistral': 909, 'n_tokens_neox': 808, 'n_words': 306}