<commit_before><!DOCTYPE html>
<!--[if lt IE 7]>      <html class="no-js lt-ie9 lt-ie8 lt-ie7"> <![endif]-->
<!--[if IE 7]>         <html class="no-js lt-ie9 lt-ie8"> <![endif]-->
<!--[if IE 8]>         <html class="no-js lt-ie9"> <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js"> <!--<![endif]-->
    <head>
        <meta charset="utf-8">
        <meta http-equiv="X-UA-Compatible" content="IE=edge">
        <title>FASTA to relaxed Phylip: Text Alignment</title>
        <meta name="description" content="FASTA to relaxed Phylip: Text Alignment, conversion between FASTA to sequential non-interleaved Phylip requires text alignment. Sequence aligner helps to align sequences and provides aligned output for RAxML.">
        <meta name="viewport" content="width=device-width, initial-scale=1">

        <!-- Place favicon.ico and apple-touch-icon.png in the root directory -->

        <link rel="stylesheet" href="css/normalize.css">
        <link rel="stylesheet" href="css/bootstrap.min.css">
        <link rel="stylesheet" href="css/main.css">
        <link rel="stylesheet" href="css/style_sa.css">
        <script src="js/vendor/modernizr-2.6.2.min.js"></script>
    </head>
    <body>
        <!--[if lt IE 7]>
            <p class="browsehappy">You are using an <strong>outdated</strong> browser. Please <a href="http://browsehappy.com/">upgrade your browser</a> to improve your experience.</p>
        <![endif]-->

        <!-- Add your site or application content here -->
        <nav class="navbar navbar-inverse navbar-fixed-top" role="navigation">
      <div class="container">
        <div class="navbar-header">
          <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
            <span class="sr-only">Toggle navigation</span>
            <span class="icon-bar"></span>
            <span class="icon-bar"></span>
            <span class="icon-bar"></span>
          </button>
          <a class="navbar-brand" href="index.html">Sequence Aligner</a>
        </div>
        <div id="navbar" class="collapse navbar-collapse">
          <ul class="nav navbar-nav">
            <li class="active"><a href="index.html">About</a></li>
            <li><a href="getstarted.html">Getting Started</a></li>
            <li><a href="example.html">Demo</a></li>
            <li><a href="inputform.html">Input Form</a></li>
            <li><a href="feedback.html">Feedback</a></li>
          </ul>
        </div><!--/.nav-collapse -->
      </div>
    </nav>

<div class="container">
	<div class="jumbotron">
		<h1>FASTA → PHYLIP</h1>
		<h4>FASTA to sequential PHYLIP sequence converter<h4>
		<p><a class="btn btn-primary btn-lg" href="example.html" role="button">Try Now!</a> <a class="btn btn-success btn-lg" href="inputform.html" role="button">Get Going!</a></p>
	</div>
    <div class="row">
       <div class="span12">
		<p class="just">A sequence alignment file in a FASTA/Pearson format, generated by multiple sequence alignment programs (e.g. <a target="_blank" href="http://mafft.cbrc.jp/alignment/server/">MAFFT</a>) is usually used as an input for Phylogenetic analysis tools (e.g. <a target="_blank" href="http://sco.h-its.org/exelixis/web/software/raxml/index.html">RAxML</a>) in a PHYLIP format. 
		The FASTA->PHYLIP alignment tool gathers information from a FASTA alignment file, and generates an output in a relaxed (sequential/non-interleaved) PHYLIP format. If you find the tool useful, simply cite the website URL or the <a target="_blank" href="https://github.com/Nazeeefa/Sequence-Aligner">Github repo.</a> Cheers!</p>
		<p class="just">Code licensed under the <a target="_blank" href="http://www.apache.org/licenses/LICENSE-2.0">Apache License v2.0.</a></p>
		</div>
	</div>
</div>

<!-- /Footer -->
	<div class="container">
        <div class="col-lg-12 col-md-12">
			<div class="row">
				<div class="page-header"><h3>Developed by:</h3></div>
				<a target="_blank" href="https://nazeeefa.github.io" title="Nazeefa"><img src="https://avatars1.githubusercontent.com/u/6730853?v=3&s=60" alt="Alternate text" class="gravatar img-square" style="height: 80px;"></a>
				<a target="_blank" href="https://www.hud.ac.uk/research/researchcentres/egrg/eeg/" title="Ekaryotic Evolution Research Group"><img src="http://www.robert-guy.com/wp-content/uploads/2015/07/uni-hud-logo.png" alt="Alternate text" style="height: 80px;"></a>
				<a target="_blank" href="https://github.com/farrukhsubhani" title="Farrukh"><img src="https://avatars1.githubusercontent.com/u/2126566?v=3&s=60" alt="Alternate text" class="gravatar img-square" style="height: 80px;"></a>
			</div>
		</div>
	</div>
        

        <script src="//ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.min.js"></script>
        <script>window.jQuery || document.write('<script src="js/vendor/jquery-1.10.2.min.js"><\/script>')</script>
		<script></script>
        <script src="js/bootstrap.min.js"></script>
        <script src="js/plugins.js"></script>
        <script src="js/script_sa.js"></script>

        <!-- Google Analytics: change UA-XXXXX-X to be your site's ID. -->
        <script>
          (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
          (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
          m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
          })(window,document,'script','//www.google-analytics.com/analytics.js','ga');
          ga('create', 'UA-56557801-1', 'auto');
          ga('send', 'pageview');

        </script>
    </body>
</html>
<commit_msg>spelling fixed<commit_after><!DOCTYPE html>
<!--[if lt IE 7]>      <html class="no-js lt-ie9 lt-ie8 lt-ie7"> <![endif]-->
<!--[if IE 7]>         <html class="no-js lt-ie9 lt-ie8"> <![endif]-->
<!--[if IE 8]>         <html class="no-js lt-ie9"> <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js"> <!--<![endif]-->
    <head>
        <meta charset="utf-8">
        <meta http-equiv="X-UA-Compatible" content="IE=edge">
        <title>FASTA to relaxed Phylip: Text Alignment</title>
        <meta name="description" content="FASTA to relaxed Phylip: Text Alignment, conversion between FASTA to sequential non-interleaved Phylip requires text alignment. Sequence aligner helps to align sequences and provides aligned output for RAxML.">
        <meta name="viewport" content="width=device-width, initial-scale=1">

        <!-- Place favicon.ico and apple-touch-icon.png in the root directory -->

        <link rel="stylesheet" href="css/normalize.css">
        <link rel="stylesheet" href="css/bootstrap.min.css">
        <link rel="stylesheet" href="css/main.css">
        <link rel="stylesheet" href="css/style_sa.css">
        <script src="js/vendor/modernizr-2.6.2.min.js"></script>
    </head>
    <body>
        <!--[if lt IE 7]>
            <p class="browsehappy">You are using an <strong>outdated</strong> browser. Please <a href="http://browsehappy.com/">upgrade your browser</a> to improve your experience.</p>
        <![endif]-->

        <!-- Add your site or application content here -->
        <nav class="navbar navbar-inverse navbar-fixed-top" role="navigation">
      <div class="container">
        <div class="navbar-header">
          <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
            <span class="sr-only">Toggle navigation</span>
            <span class="icon-bar"></span>
            <span class="icon-bar"></span>
            <span class="icon-bar"></span>
          </button>
          <a class="navbar-brand" href="index.html">Sequence Aligner</a>
        </div>
        <div id="navbar" class="collapse navbar-collapse">
          <ul class="nav navbar-nav">
            <li class="active"><a href="index.html">About</a></li>
            <li><a href="getstarted.html">Getting Started</a></li>
            <li><a href="example.html">Demo</a></li>
            <li><a href="inputform.html">Input Form</a></li>
            <li><a href="feedback.html">Feedback</a></li>
          </ul>
        </div><!--/.nav-collapse -->
      </div>
    </nav>

<div class="container">
	<div class="jumbotron">
		<h1>FASTA → PHYLIP</h1>
		<h4>FASTA to sequential PHYLIP sequence converter<h4>
		<p><a class="btn btn-primary btn-lg" href="example.html" role="button">Try Now!</a> <a class="btn btn-success btn-lg" href="inputform.html" role="button">Get Going!</a></p>
	</div>
    <div class="row">
       <div class="span12">
		<p class="just">A sequence alignment file in a FASTA/Pearson format, generated by multiple sequence alignment programs (e.g. <a target="_blank" href="http://mafft.cbrc.jp/alignment/server/">MAFFT</a>) is usually used as an input for Phylogenetic analysis tools (e.g. <a target="_blank" href="http://sco.h-its.org/exelixis/web/software/raxml/index.html">RAxML</a>) in a PHYLIP format. 
		The FASTA->PHYLIP alignment tool gathers information from a FASTA alignment file, and generates an output in a relaxed (sequential/non-interleaved) PHYLIP format. If you find the tool useful, simply cite the website URL or the <a target="_blank" href="https://github.com/Nazeeefa/Sequence-Aligner">Github repo.</a> Cheers!</p>
		<p class="just">Code licensed under the <a target="_blank" href="http://www.apache.org/licenses/LICENSE-2.0">Apache License v2.0.</a></p>
		</div>
	</div>
</div>

<!-- /Footer -->
	<div class="container">
        <div class="col-lg-12 col-md-12">
			<div class="row">
				<div class="page-header"><h3>Developed by:</h3></div>
				<a target="_blank" href="https://nazeeefa.github.io" title="Nazeefa"><img src="https://avatars1.githubusercontent.com/u/6730853?v=3&s=60" alt="Alternate text" class="gravatar img-square" style="height: 80px;"></a>
				<a target="_blank" href="https://www.hud.ac.uk/research/researchcentres/egrg/eeg/" title="Eukaryotic Evolution Research Group"><img src="http://www.robert-guy.com/wp-content/uploads/2015/07/uni-hud-logo.png" alt="Alternate text" style="height: 80px;"></a>
				<a target="_blank" href="https://github.com/farrukhsubhani" title="Farrukh"><img src="https://avatars1.githubusercontent.com/u/2126566?v=3&s=60" alt="Alternate text" class="gravatar img-square" style="height: 80px;"></a>
			</div>
		</div>
	</div>
        

        <script src="//ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.min.js"></script>
        <script>window.jQuery || document.write('<script src="js/vendor/jquery-1.10.2.min.js"><\/script>')</script>
		<script></script>
        <script src="js/bootstrap.min.js"></script>
        <script src="js/plugins.js"></script>
        <script src="js/script_sa.js"></script>

        <!-- Google Analytics: change UA-XXXXX-X to be your site's ID. -->
        <script>
          (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
          (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
          m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
          })(window,document,'script','//www.google-analytics.com/analytics.js','ga');
          ga('create', 'UA-56557801-1', 'auto');
          ga('send', 'pageview');

        </script>
    </body>
</html>

{'fraction_non_alphanumeric': 0.19661435372950098, 'fraction_numerical': 0.015164873919943573, 'mean_word_length': 3.3227896341463414, 'pattern_counts': {'":': 0, '<': 307, '<?xml version=': 0, '>': 307, 'https://': 12, 'lorem ipsum': 0, 'www.': 8, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '441247', 'n_tokens_mistral': 4041, 'n_tokens_neox': 3757, 'n_words': 785}