<commit_before>{
    "title": "Workflow",
    "description": "Schema for submitting a computational analysis workflow that is composed of analysis step(s).",
    "id": "/profiles/workflow.json",
    "$schema": "http://json-schema.org/draft-04/schema#",
    "type": "object",
    "required": ["title", "name", "workflow_type", "award", "lab"],
    "additionalProperties": false,
    "identifyingProperties": ["uuid", "aliases", "accession"],
    "mixinProperties": [
        { "$ref": "mixins.json#/schema_version" },
        { "$ref": "mixins.json#/aliases" },
        { "$ref": "mixins.json#/uuid" },
        { "$ref": "mixins.json#/status" },
        { "$ref": "mixins.json#/submitted" },
        { "$ref": "mixins.json#/modified" },
        { "$ref": "mixins.json#/release_dates" },
        { "$ref": "mixins.json#/documents" },
        { "$ref": "mixins.json#/attribution" },
        { "$ref": "mixins.json#/accession" },
        { "$ref": "mixins.json#/notes" },
        { "$ref": "mixins.json#/static_headers" }
    ],
    "mixinFacets" : [
        { "$ref": "mixins.json#/facets_common" }
    ],
    "properties": {
        "schema_version": {
            "default": "5"
        },
        "accession": {
            "accessionType": "WF"
        },
        "title": {
            "title": "Title",
            "description": "The preferred viewable name of the workflow.",
            "type": "string"
        },
        "name": {
            "title": "Name",
            "description": "The name and version of the workflow used by either SBG or Tibanna, in the format of name/version",
            "type": "string"
        },
        "description": {
            "title": "Description",
            "description": "A short text description of the workflow.",
            "type": "string",
            "formInput": "textarea"
        },
        "data_types": {
            "title": "Data types",
            "description": "Types of the data that the workflow is applied to.",
            "type": "array",
            "items": {
                "title": "Data type",
                "description": "type of data that the workflow is applied to",
                "type": "string"
            }
        },
        "category": {
            "title": "Category",
            "description": "A short text description of the workflow's category (e.g. alignment).",
            "type": "string"
        },
        "workflow_type": {
            "title": "Workflow Type",
            "type": "string",
            "enum": [
                "Hi-C data analysis",
                "Image processing",
                "Visualization processing",
                "Repli-seq data processing",
                "Data QC",
                "Other"
            ]
        },
        "workflow_diagram": {
            "title": "Workflow diagram",
            "description": "Image of workflow diagram",
            "type": "string"
        },
        "cwl_pointer": {
            "title": "SBG CWL Path",
            "description": "Path to the SBG CWL file for the workflow - URL or directory path",
            "type": "string"
        },
        "app_name": {
            "title": "App name",
            "description": "The name of the workflow app.",
            "type": "string"
        },
        "app_version": {
            "title": "App version",
            "description": "The version of the workflow app.",
            "type": "string"
        },
        "previous_version": {
            "title": "Previous version",
            "description": "Link to the previous version of the workflow.",
            "type": "string",
            "linkTo": "Workflow"
        },
        "version_upgrade_log": {
            "title": "Version upgrade log",
            "description": "Version upgrade log",
            "type": "string"
        },
        "cwl_directory_url": {
            "title": "CWL directory url",
            "description": "URL of the directory that contains main and other CWL files needed for the workflow",
            "type": "string"
        },
        "cwl_directory_url_draft3": {
            "title": "CWL directory url for CWL draft3",
            "description": "URL of the directory that contains main and other CWL files needed for the workflow",
            "type": "string"
        },
        "cwl_directory_url_v1": {
            "title": "CWL directory url for CWL v1.0",
            "description": "URL of the directory that contains main and other CWL files needed for the workflow",
            "type": "string"
        },
        "cwl_main_filename": {
            "title": "CWL main file name",
            "description": "Name of the main CWL file for the workflow",
            "type": "string"
        },
        "cwl_child_filenames": {
            "title": "CWL child file names",
            "description": "Names of the other CWL files used by the main CWL file for the workflow",
            "type": "array",
            "items": {
                "title": "CWL child file name",
                "description": "name of a cwl file",
                "type": "string"
            }
        },
        "wdl_directory_url": {
            "title": "WDL directory url",
            "description": "URL of the directory that contains main and other WDL files needed for the workflow",
            "type": "string"
        },
        "wdl_main_filename": {
            "title": "WDL main file name",
            "description": "Name of the main WDL file for the workflow",
            "type": "string"
        },
        "wdl_child_filenames": {
            "title": "WDL child file names",
            "description": "Names of the other WDL files used by the main WDL file for the workflow",
            "type": "array",
            "items": {
                "title": "WDL child file name",
                "description": "name of a wdl file",
                "type": "string"
            }
        },
        "workflow_language": {
            "title": "CWL main file name",
            "description": "Name of the main CWL file for the workflow",
            "type": "string",
            "enum": [
                "CWL",
                "WDL"
            ],
            "default": "CWL"
        },
        "docker_registry_url": {
            "title": "Docker Registry URL",
            "description": "Docker Hub or 7 bridges registry URL.",<commit_msg>minor change in workflow schema json<commit_after>{
    "title": "Workflow",
    "description": "Schema for submitting a computational analysis workflow that is composed of analysis step(s).",
    "id": "/profiles/workflow.json",
    "$schema": "http://json-schema.org/draft-04/schema#",
    "type": "object",
    "required": ["title", "name", "workflow_type", "award", "lab"],
    "additionalProperties": false,
    "identifyingProperties": ["uuid", "aliases", "accession"],
    "mixinProperties": [
        { "$ref": "mixins.json#/schema_version" },
        { "$ref": "mixins.json#/aliases" },
        { "$ref": "mixins.json#/uuid" },
        { "$ref": "mixins.json#/status" },
        { "$ref": "mixins.json#/submitted" },
        { "$ref": "mixins.json#/modified" },
        { "$ref": "mixins.json#/release_dates" },
        { "$ref": "mixins.json#/documents" },
        { "$ref": "mixins.json#/attribution" },
        { "$ref": "mixins.json#/accession" },
        { "$ref": "mixins.json#/notes" },
        { "$ref": "mixins.json#/static_headers" }
    ],
    "mixinFacets" : [
        { "$ref": "mixins.json#/facets_common" }
    ],
    "properties": {
        "schema_version": {
            "default": "5"
        },
        "accession": {
            "accessionType": "WF"
        },
        "title": {
            "title": "Title",
            "description": "The preferred viewable name of the workflow.",
            "type": "string"
        },
        "name": {
            "title": "Name",
            "description": "The name and version of the workflow used by either SBG or Tibanna, in the format of name/version",
            "type": "string"
        },
        "description": {
            "title": "Description",
            "description": "A short text description of the workflow.",
            "type": "string",
            "formInput": "textarea"
        },
        "data_types": {
            "title": "Data types",
            "description": "Types of the data that the workflow is applied to.",
            "type": "array",
            "items": {
                "title": "Data type",
                "description": "type of data that the workflow is applied to",
                "type": "string"
            }
        },
        "category": {
            "title": "Category",
            "description": "A short text description of the workflow's category (e.g. alignment).",
            "type": "string"
        },
        "workflow_type": {
            "title": "Workflow Type",
            "type": "string",
            "enum": [
                "Hi-C data analysis",
                "Image processing",
                "Visualization processing",
                "Repli-seq data processing",
                "ChIP-seq data processing",
                "Data QC",
                "Other"
            ]
        },
        "workflow_diagram": {
            "title": "Workflow diagram",
            "description": "Image of workflow diagram",
            "type": "string"
        },
        "cwl_pointer": {
            "title": "SBG CWL Path",
            "description": "Path to the SBG CWL file for the workflow - URL or directory path",
            "type": "string"
        },
        "app_name": {
            "title": "App name",
            "description": "The name of the workflow app.",
            "type": "string"
        },
        "app_version": {
            "title": "App version",
            "description": "The version of the workflow app.",
            "type": "string"
        },
        "previous_version": {
            "title": "Previous version",
            "description": "Link to the previous version of the workflow.",
            "type": "string",
            "linkTo": "Workflow"
        },
        "version_upgrade_log": {
            "title": "Version upgrade log",
            "description": "Version upgrade log",
            "type": "string"
        },
        "cwl_directory_url": {
            "title": "CWL directory url",
            "description": "URL of the directory that contains main and other CWL files needed for the workflow",
            "type": "string"
        },
        "cwl_directory_url_draft3": {
            "title": "CWL directory url for CWL draft3",
            "description": "URL of the directory that contains main and other CWL files needed for the workflow",
            "type": "string"
        },
        "cwl_directory_url_v1": {
            "title": "CWL directory url for CWL v1.0",
            "description": "URL of the directory that contains main and other CWL files needed for the workflow",
            "type": "string"
        },
        "cwl_main_filename": {
            "title": "CWL main file name",
            "description": "Name of the main CWL file for the workflow",
            "type": "string"
        },
        "cwl_child_filenames": {
            "title": "CWL child file names",
            "description": "Names of the other CWL files used by the main CWL file for the workflow",
            "type": "array",
            "items": {
                "title": "CWL child file name",
                "description": "name of a cwl file",
                "type": "string"
            }
        },
        "wdl_directory_url": {
            "title": "WDL directory url",
            "description": "URL of the directory that contains main and other WDL files needed for the workflow",
            "type": "string"
        },
        "wdl_main_filename": {
            "title": "WDL main file name",
            "description": "Name of the main WDL file for the workflow",
            "type": "string"
        },
        "wdl_child_filenames": {
            "title": "WDL child file names",
            "description": "Names of the other WDL files used by the main WDL file for the workflow",
            "type": "array",
            "items": {
                "title": "WDL child file name",
                "description": "name of a wdl file",
                "type": "string"
            }
        },
        "workflow_language": {
            "title": "Workflow language",
            "description": "Language used to describe workflow, either CWL or WDL",
            "type": "string",
            "enum": [
                "CWL",
                "WDL"
            ],
            "default": "CWL"
        },
        "docker_registry_url": {
            "title": "Docker Registry URL",
            "description": "Docker Hub or 7 bridges registry URL.",
{'fraction_non_alphanumeric': 0.1423462644795149, 'fraction_numerical': 0.0013993625126331338, 'mean_word_length': 1.6490939044481054, 'pattern_counts': {'":': 260, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5266182', 'n_tokens_mistral': 3563, 'n_tokens_neox': 3457, 'n_words': 1051}