<commit_before>################## BASE IMAGE ######################
FROM biocontainers/biocontainers:latest

################## METADATA ######################
LABEL base_image="biocontainers:latest"
LABEL version="2"
LABEL software="PepNovo"
LABEL software.version="20120423"
LABEL about.summary="de novo sequencing of low precision MS/MS data"
LABEL about.home="http://proteomics.ucsd.edu/Software/PepNovo/"
LABEL about.documentation="http://proteomics.ucsd.edu/Software/PepNovo/"
LABEL about.license_file="http://proteomics.ucsd.edu/Software/PepNovo/"
LABEL about.license="SPDX:CC-BY-NC-4.0"
LABEL about.tags="Proteomics"
LABEL extra.identifiers.biotools="pepnovo"

################## MAINTAINER ######################
MAINTAINER <NAME> <<EMAIL>>

USER root

RUN apt-get update && \
  apt-get install -y \
	dos2unix  && \
  apt-get clean && \
  apt-get purge && \
  rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

USER biodocker

RUN ZIP=PepNovo.20120423.zip && \
  wget https://github.com/BioDocker/software-archive/releases/download/PepNovo/$ZIP -O /tmp/$ZIP && \
  unzip /tmp/$ZIP -d /home/biodocker/bin/PepNovo/ && \
  rm /tmp/$ZIP && \
  cd /home/biodocker/bin/PepNovo/src && \
  make && \<commit_msg>PEPNOVO: Updated Dockerfile to use specific version of base image<commit_after>################## BASE IMAGE ######################
FROM biocontainers/biocontainers:v1.0.0_cv4

################## METADATA ######################
LABEL base_image="biocontainers:v1.0.0_cv4"
LABEL version="3"
LABEL software="PepNovo"
LABEL software.version="20120423"
LABEL about.summary="de novo sequencing of low precision MS/MS data"
LABEL about.home="http://proteomics.ucsd.edu/Software/PepNovo/"
LABEL about.documentation="http://proteomics.ucsd.edu/Software/PepNovo/"
LABEL about.license_file="http://proteomics.ucsd.edu/Software/PepNovo/"
LABEL about.license="SPDX:CC-BY-NC-4.0"
LABEL about.tags="Proteomics"
LABEL extra.identifiers.biotools="pepnovo"

################## MAINTAINER ######################
MAINTAINER <NAME> <<EMAIL>>

USER root

RUN apt-get update && \
  apt-get install -y \
	dos2unix  && \
  apt-get clean && \
  apt-get purge && \
  rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

USER biodocker

RUN ZIP=PepNovo.20120423.zip && \
  wget https://github.com/BioDocker/software-archive/releases/download/PepNovo/$ZIP -O /tmp/$ZIP && \
  unzip /tmp/$ZIP -d /home/biodocker/bin/PepNovo/ && \
  rm /tmp/$ZIP && \
  cd /home/biodocker/bin/PepNovo/src && \
  make && \
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{'dir': 'git-commits-cleaned', 'id': '2104998', 'n_tokens_mistral': 938, 'n_tokens_neox': 903, 'n_words': 157}