<commit_before>Biological reasoning agents
===========================

A collection of agents for biological reasoning 
in a communication system. 

- MRA (Mechanistic Reasoning Agent)
- MEA (Model Execution Agent)
- DDA (Disease and Drug Agent)<commit_msg>Update readme with agent details.<commit_after>Biological reasoning agents
===========================

A collection of agents for biological reasoning 
in a communication system. 

- MRA (Mechanistic Reasoning Agent): The MRA uses INDRA to construct mechanistic models of biochemical systems from user input, publications and databases. It can also propose changes to model structure autonomously. 
- MEA (Model Execution Agent): The MEA sets up simulation conditions, simulates models and interprets the output.
- DTDA (Disease, Target and Drug Agent): The DTDA's task is to search for targets known to be implicated in a disease and to look for drugs that are known to affect that target.
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