<commit_before>import pandas as pd
import sys


df = pd.read_csv(sys.argv[1])
df.columns = [c.lower() for c in df.columns]

from sqlalchemy import create_engine
engine = create_engine('postgresql://postgresql.service.consul:5432/germline_genotype_tracking')

try:<commit_msg>Add DB credentials to sqlalchemy connection.<commit_after>import pandas as pd
import sys


df = pd.read_csv(sys.argv[1])
df.columns = [c.lower() for c in df.columns]

from sqlalchemy import create_engine
engine = create_engine('postgresql://pcawg_admin:pcawg@postgresql.service.consul:5432/germline_genotype_tracking')

try:
{'fraction_non_alphanumeric': 0.10851419031719532, 'fraction_numerical': 0.01669449081803005, 'mean_word_length': 6.407407407407407, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 1, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '983429', 'n_tokens_mistral': 219, 'n_tokens_neox': 205, 'n_words': 46}