<commit_before>bioblend>=0.4.2
biopython>=1.61
boto>=2.9.6
cutadapt>=1.2.1
Cython>=0.19
fabric>=1.7.0
HTSeq >= 0.5.4p5
ipython>=1.1.0
ipython-cluster-helper>=0.2.12
joblib>=0.7.0d
Logbook>=0.6.0
lxml>=3.2.3
nose>=1.3.0
psutil>=1.2.0
pybedtools>=0.6.2
pysam>=0.6
pyzmq>=2.2.0
PyYAML>=3.10
sh>=1.07
tornado>=3.1.0
Mako>=0.7.3
py_descriptive_statistics>=0.2
bcbio-nextgen==0.7.6
gffutils>=0.8.1<commit_msg>Bump to latest ipython-cluster-helper with torque fix<commit_after>bioblend>=0.4.2
biopython>=1.61
boto>=2.9.6
cutadapt>=1.2.1
Cython>=0.19
fabric>=1.7.0
HTSeq >= 0.5.4p5
ipython>=1.1.0
ipython-cluster-helper>=0.2.13
joblib>=0.7.0d
Logbook>=0.6.0
lxml>=3.2.3
nose>=1.3.0
psutil>=1.2.0
pybedtools>=0.6.2
pysam>=0.6
pyzmq>=2.2.0
PyYAML>=3.10
sh>=1.07
tornado>=3.1.0
Mako>=0.7.3
py_descriptive_statistics>=0.2
bcbio-nextgen==0.7.6
gffutils>=0.8.1
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{'dir': 'git-commits-cleaned', 'id': '6110269', 'n_tokens_mistral': 509, 'n_tokens_neox': 481, 'n_words': 55}