<commit_before>[![Build Status](https://travis-ci.org/jeremymcrae/publishedDeNovos.svg?branch=master)]
(https://travis-ci.org/jeremymcrae/publishedDeNovos)

### publishedDeNovos
Data package of de novo variants identified in exome and genome sequencing
studies that have been reported in publications. All of the data is obtained
from publically-available sources, such as supplementary data from the
individual publications.

### Studies
reference      |      phenotype      |      resources
----           |      ----           |      ----
[De Ligt et al. N Engl J Med 367:1921-1929](https://doi.org/10.1056/NEJMoa1206524)      |      intellectual_disability      |      [Supplementary table 3](http://www.nejm.org/doi/suppl/10.1056/NEJMoa1206524/suppl_file/nejmoa126524_appendix.pdf)
[Iossifov et al. Neuron 74:285-299](https://doi.org/10.1016/j.neuron.2012.04.009)      |      autism      |      [Supplementary table 1](http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0896627312003406/1-s2.0-S0896627312003406-mmc2.xlsx/272195/FULL/S0896627312003406/26c5ba3b72a2410ef43fec52a40f35e6/mmc2.xlsx) and [table 3](http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0896627312003406/1-s2.0-S0896627312003406-mmc4.xlsx/272195/FULL/S0896627312003406/6caa42b35609c2ed5910b5381ddd5335/mmc4.xlsx)
[O'Roak et al. Nature 485:246-250](https://doi.org/10.1038/nature10989)      |      autism      |      [Supplementary table 3](http://www.nature.com/nature/journal/v485/n7397/extref/nature10989-s2.xls)
[Rauch et al. Lancet 380:1674-1682](https://doi.org/10.1016/S0140-6736%2812%2961480-9)      |      intellectual_disability      |      [Supplementary tables 2 and 3](http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0140673612614809/1-s2.0-S0140673612614809-mmc1.pdf/271074/FULL/S0140673612614809/55b26043f4a279334b3a5ec00b9faf4b/mmc1.pdf)
[Sanders et al. Nature 485:237-241](https://doi.org/10.1038/nature10945)      |      autism      |      [Supplementary table 2](http://www.nature.com/nature/journal/v485/n7397/extref/nature10945-s3.xls)
[Epi4K Consortium. Nature 501:217-221](https://doi.org/10.1038/nature12439)      |      epilepsy      |      [Supplementary table 2](http://www.nature.com/nature/journal/v501/n7466/extref/nature12439-s1.pdf)
[Zaidi et al. Nature 498:220-223](https://doi.org/10.1038/nature12141)      |      congenital_heart_disease      |      [Supplementary table 4](http://www.nature.com/nature/journal/v498/n7453/extref/nature12141-s1.pdf)
[De Rubeis et al. Nature 515:209-215](https://doi.org/10.1038/nature13772)      |      autism      |      [Supplementary table 4](http://www.nature.com/nature/journal/v515/n7526/extref/nature13772-s4.xlsx)
[EuroEPINOMICS-RES Consortium. American Journal of Human Genetics 95:360-370](https://doi.org/10.1016/j.ajhg.2014.08.013)      |      epilepsy      |      [Supplementary table 1](http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0002929714003838/1-s2.0-S0002929714003838-mmc2.xlsx/276895/html/S0002929714003838/3c69e8c86ba194a064da8776c4e012c3/mmc2.xlsx)
[Fromer et al. Nature 506:179-184](https://doi.org/10.1038/nature12929)      |      schizophrenia      |      [Supplementary table 1](http://www.nature.com/nature/journal/v506/n7487/extref/nature12929-s2.xlsx)
[Gilissen et al. Nature 511:344-347](https://doi.org/10.1038/nature13394)      |      intellectual_disability      |      [Supplementray table 8](http://www.nature.com/nature/journal/v511/n7509/extref/nature13394-s1.pdf)
[Iossifov et al. Nature 498:216-221](https://doi.org/10.1038/nature13908)      |      autism      |      [Supplementary table 2](http://www.nature.com/nature/journal/v515/n7526/extref/nature13908-s2.zip)
<commit_msg>reformatted publications table in readme<commit_after>[![Build Status](https://travis-ci.org/jeremymcrae/publishedDeNovos.svg?branch=master)]
(https://travis-ci.org/jeremymcrae/publishedDeNovos)

### publishedDeNovos
Data package of de novo variants identified in exome and genome sequencing
studies that have been reported in publications. All of the data is obtained
from publically-available sources, such as supplementary data from the
individual publications.

### Studies
reference      |      phenotype      |      resources
----           |      ----           |      ----
[De Ligt _et al_. _N Engl J Med_ 367:1921-1929](https://doi.org/10.1056/NEJMoa1206524)      |      intellectual_disability      |      [table S3](http://www.nejm.org/doi/suppl/10.1056/NEJMoa1206524/suppl_file/nejmoa126524_appendix.pdf)
[Iossifov _et al_. _Neuron_ 74:285-299](https://doi.org/10.1016/j.neuron.2012.04.009)      |      autism      |      [table S1](http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0896627312003406/1-s2.0-S0896627312003406-mmc2.xlsx/272195/FULL/S0896627312003406/26c5ba3b72a2410ef43fec52a40f35e6/mmc2.xlsx) and [table S3](http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0896627312003406/1-s2.0-S0896627312003406-mmc4.xlsx/272195/FULL/S0896627312003406/6caa42b35609c2ed5910b5381ddd5335/mmc4.xlsx)
[O'Roak _et al_. _Nature_ 485:246-250](https://doi.org/10.1038/nature10989)      |      autism      |      [table S3](http://www.nature.com/nature/journal/v485/n7397/extref/nature10989-s2.xls)
[Rauch _et al_. _Lancet_ 380:1674-1682](https://doi.org/10.1016/S0140-6736%2812%2961480-9)      |      intellectual_disability      |      [tables S2 and S3](http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0140673612614809/1-s2.0-S0140673612614809-mmc1.pdf/271074/FULL/S0140673612614809/55b26043f4a279334b3a5ec00b9faf4b/mmc1.pdf)
[Sanders _et al_. _Nature_ 485:237-241](https://doi.org/10.1038/nature10945)      |      autism      |      [table S2](http://www.nature.com/nature/journal/v485/n7397/extref/nature10945-s3.xls)
[Epi4K Consortium. _Nature_ 501:217-221](https://doi.org/10.1038/nature12439)      |      epilepsy      |      [table S2](http://www.nature.com/nature/journal/v501/n7466/extref/nature12439-s1.pdf)
[Zaidi _et al_. _Nature_ 498:220-223](https://doi.org/10.1038/nature12141)      |      congenital_heart_disease      |      [table S4](http://www.nature.com/nature/journal/v498/n7453/extref/nature12141-s1.pdf)
[De Rubeis _et al_. _Nature_ 515:209-215](https://doi.org/10.1038/nature13772)      |      autism      |      [table S4](http://www.nature.com/nature/journal/v515/n7526/extref/nature13772-s4.xlsx)
[EuroEPINOMICS-RES Consortium. _AJHG_ 95:360-370](https://doi.org/10.1016/j.ajhg.2014.08.013)      |      epilepsy      |      [table S1](http://www.sciencedirect.com/science/MiamiMultiMediaURL/1-s2.0-S0002929714003838/1-s2.0-S0002929714003838-mmc2.xlsx/276895/html/S0002929714003838/3c69e8c86ba194a064da8776c4e012c3/mmc2.xlsx)
[Fromer _et al_. _Nature_ 506:179-184](https://doi.org/10.1038/nature12929)      |      schizophrenia      |      [table S1](http://www.nature.com/nature/journal/v506/n7487/extref/nature12929-s2.xlsx)
[Gilissen _et al_. _Nature_ 511:344-347](https://doi.org/10.1038/nature13394)      |      intellectual_disability      |      [table S8](http://www.nature.com/nature/journal/v511/n7509/extref/nature13394-s1.pdf)
[Iossifov _et al_. _Nature_ 498:216-221](https://doi.org/10.1038/nature13908)      |      autism      |      [table S2](http://www.nature.com/nature/journal/v515/n7526/extref/nature13908-s2.zip)

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