<commit_before>tools:

- name: 'ncbi_blast_plus'
  owner: 'devteam'
  tool_panel_section_id: 'similarity_search'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '7f3c448e119b'
- name: 'diamond'
  owner: 'bgruening'
  tool_panel_section_id: 'similarity_search'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '98037ef3d2a9'
- name: 'bwa'
  owner: 'devteam'
  tool_panel_section_id: 'mapping'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '546ada4a9f43'
- name: 'metaphlan2'
  owner: 'bebatut'
  tool_panel_section_id: 'all_seq_taxonomic_assignation'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - 'd2448d2bf1f8'
- name: 'format_metaphlan2_output'
  owner: 'bebatut'
  tool_panel_section_id: 'all_seq_taxonomic_assignation'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '2bfa9b200600'
- name: 'humann2'
  owner: 'bebatut'
  tool_panel_section_id: 'metabolic_analysis'
  tool_shed_url: 'http://toolshed.g2.bx.psu.edu/'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - 'bcd414bb721b'
- name: 'group_humann2_uniref_abundances_to_go'
  owner: 'bebatut'
  tool_panel_section_id: 'metabolic_analysis'
  tool_shed_url: 'http://toolshed.g2.bx.psu.edu/'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - 'cad28d7b49d2'
- name: 'compare_humann2_output'
  owner: 'bebatut'
  tool_panel_section_id: 'metabolic_analysis'
  tool_shed_url: 'http://toolshed.g2.bx.psu.edu/'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - 'c1aca37cb1fc'
- name: 'combine_metaphlan2_humann2'
  owner: 'bebatut'
  tool_panel_section_id: 'combine_taxo_func'
  tool_shed_url: 'http://toolshed.g2.bx.psu.edu/'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '31394a0c0242'
<commit_msg>Add mothur to install<commit_after>tools:
- name: 'ncbi_blast_plus'
  owner: 'devteam'
  tool_panel_section_id: 'similarity_search'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '7f3c448e119b'
- name: 'diamond'
  owner: 'bgruening'
  tool_panel_section_id: 'similarity_search'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '98037ef3d2a9'
- name: 'bwa'
  owner: 'devteam'
  tool_panel_section_id: 'mapping'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '546ada4a9f43'
- name: 'metaphlan2'
  owner: 'bebatut'
  tool_panel_section_id: 'all_seq_taxonomic_assignation'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - 'd2448d2bf1f8'
- name: 'suite_mothur'
  owner: 'saskia-hiltemann'
  tool_panel_section_id: 'mothur'
  tool_shed_url: 'https://testtoolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  #- 'd2448d2bf1f8'
- name: 'format_metaphlan2_output'
  owner: 'bebatut'
  tool_panel_section_id: 'all_seq_taxonomic_assignation'
  tool_shed_url: 'https://toolshed.g2.bx.psu.edu'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '2bfa9b200600'
- name: 'humann2'
  owner: 'bebatut'
  tool_panel_section_id: 'metabolic_analysis'
  tool_shed_url: 'http://toolshed.g2.bx.psu.edu/'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - 'bcd414bb721b'
- name: 'group_humann2_uniref_abundances_to_go'
  owner: 'bebatut'
  tool_panel_section_id: 'metabolic_analysis'
  tool_shed_url: 'http://toolshed.g2.bx.psu.edu/'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - 'cad28d7b49d2'
- name: 'compare_humann2_output'
  owner: 'bebatut'
  tool_panel_section_id: 'metabolic_analysis'
  tool_shed_url: 'http://toolshed.g2.bx.psu.edu/'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - 'c1aca37cb1fc'
- name: 'combine_metaphlan2_humann2'
  owner: 'bebatut'
  tool_panel_section_id: 'combine_taxo_func'
  tool_shed_url: 'http://toolshed.g2.bx.psu.edu/'
  install_tool_dependencies: True
  install_repository_dependencies: True
  revisions:
  - '31394a0c0242'

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