<commit_before>BAA25253 Similar O62658_CANFA LINE-1 element ORF2 parent: AB012223.1 (jhv)
AB012223 LINE-1 element (jhv)
Q8BRF5 Similar to Gag-Protein / Polyprotein (jhv)
Q99KP9 Similar to Retrovirus-related Polyprotein (jhv)
Q3TL09 Similar to Gag-protein (jhv) 
Q61530 Retrovirus-related (jhv)
NP_001013837 Novel protein / simlar to gag's (jhv)
NP_001012326 Similar to Retrovirus-related POL pol (jhv)
Q5SVZ4 Novel protein / simlar to gag's (jhv)
Q3U4K5 simialar to Envelope protein (jhv) 
Q80TD1 similar to Putative gag-pro-pol polyprotein (jhv) 
Q8VE82 Hypothetical protein / Fragment similar proviral gag (jhv)
NP_032607 similar to Evnelope pol. pro.  (jhv)
NP_001013811 Hypothetical protein / rev. transcriptase (jhv) 
Q8C1Z1 similar Retrovirus-related Pol polyprotein / L1 retrotrans. (jhv) 
NP_001004189 similar Retrovirus-related Pol polyprotein jhv
Q6T3U6 similar Reverse transcriptase / Gag-Pol polypro.  jhv 
Q3UF90 similar Mus musculus domesticus L1 retrotrans.  jhv 
Q8VCM6 similar Mus musculus domesticus L1 retrotrans jhv 
Q8BM31 10 Q8BM31 Q8BM31 Similar to L1 repeat.
Q63304 10 Q63304 Q63304 ORF2 protein.
Q8BXC1 11 Q8BXC1 Q8BXC1 Weakly similar to PRO-1 protein.
Q8BI91 32 Q8BI91 Q8BI91 Weakly similar to repetitive protein BKM.
Q8BIN7 37 Q8BIN7 Q8BIN7 Similar to LINE protein.
Q8K0U5 49 Q8K0U5 Q8K0U5 Similar to RIKEN cDNA 1110004B06 gene.
Q91YJ9 68 Q91YJ9 Q91YJ9 Similar to RIKEN cDNA C330014O21 gene.
Q8BUJ3 78 Q8BUJ3 Q8BUJ3 Similar to ORF7 protein.
Q8BQ61 13 Q8BQ61 Q8BQ61 Hypothetical protein.
Q63779 13 Q63779 Q63779 Hypothetical 76.2 kDa protein.
Q63775 13 Q63775 Q63775 Hypothetical 38.7 kDa protein.
O08698 15 O08698 O08698 Putative RNA binding protein 1 (Fragment).
Q8C7B1 17 Q8C7B1 Q8C7B1 Hypothetical protein.
Q8BZN1 17 Q8BZN1 Q8BZN1 Hypothetical tyrosine-rich region containing protein.
Q8BNS2 19 Q8BNS2 Q8BNS2 Hypothetical protein.
P97692 24 P97692 P97692 L1 retrotransposon ORF2 (Fragment).
Q63778 26 Q63778 Q63778 Hypothetical 43.7 kDa protein.
O08870 39 O08870 O08870 Putative RNA binding protein 1 (Fragment).
P11260 40 YO11_MOUSE P11260 Hypothetical protein ORF-1137.
Q8C1S6 88 Q8C1S6 Q8C1S6 Mouse endogenous murine leukemia virus modified polytropic provirus DNA (Fragment).
Q63309 109 Q63309 Q63309 ORF7 protein.
Q8C256 111 Q8C256 Q8C256 Hypothetical protein.
Q63502 246 Q63502 Q63502 ORF1 protein.
Q91WW0 284 Q91WW0 Q91WW0 Hypothetical protein (Expressed sequence AI591529).
Q8CEJ9 311 Q8CEJ9 Q8CEJ9 Weakly similar to Bkm-like sex-determining region hypothetical protein CS319.
Q8BTF6 327 Q8BTF6 Q8BTF6 Inferred: proteasome subunit alpha type 6 (Fragment).
NP_598602.1 360 gi|19527058|ref|NP_598602.1| (NM_133841) expressed sequence AI591529 [Mus musculus]
Q63308 508 Q63308 Q63308 ORF6 protein.
Q8BNK6 992 Q8BNK6 Q8BNK6 Hypothetical protein (Fragment).
Q8CAN8 1415 Q8CAN8 Q8CAN8 Hypothetical protein.
Q9CXB3 1867 Q9CXB3 Q9CXB3 8430416G17Rik protein.
Q8CBN4 18368 Q8CBN4 Q8CBN4 Similar to spermatid-specific protein T1.
Q8K080 Hypothetical protein. lec
Q99LR7 Hypothetical 35.7 kDa protein (Fragment). lec
Q99KW1 Hypothetical 28.1 kDa protein (Fragment). lec
O88262 Mszf59-2 (Fragment). lec
Q9CRN0 6720475J19Rik protein (Fragment) lec
P11370 Retrovirus-related ENV polyprotein from Fv-4 locus. lec
Q9R137 Cyclophilin A (Peptidyl-prolyl cis-trans isomerase) lec
Q8K081 Hypothetical protein. lec
Q9CST9 weakly similar to GAG PROTEIN (Fragment). lec
Q8R596 Hypothetical 4.4 kDa protein. lec
Q8BNJ4 Transient receptor protein 7. lec
Q60713 Reverse transcriptase. lec
P17013 poly X vac
Q99784 NOE1_HUMAN Q99784 Noelin precursor vac
AK057787	supports transposable elements - Daniel
NP_079244	supports transposable elements - Daniel
O00360	supports transposable elements - Daniel
O00362	supports transposable elements - Daniel
O00363	supports transposable elements - Daniel
O00366	supports transposable elements - Daniel
O00368	supports transposable elements - Daniel
O00372	supports transposable elements - Daniel
O00375	supports transposable elements - Daniel
O00378	supports transposable elements - Daniel
O00549	supports transposable elements - Daniel
P08547	supports transposable elements - Daniel
Q02364	supports transposable elements - Daniel
Q12881	supports transposable elements - Daniel
Q14269	supports transposable elements - Daniel
Q14270	supports transposable elements - Daniel
Q14287	supports transposable elements - Daniel
Q14288	supports transposable elements - Daniel
Q14710	supports transposable elements - Daniel
Q14711	supports transposable elements - Daniel
Q14712	supports transposable elements - Daniel
Q14713	supports transposable elements - Daniel
Q15604	supports transposable elements - Daniel
Q15606	supports transposable elements - Daniel
Q96GQ3	supports transposable elements - Daniel
Q96LU6	supports transposable elements - Daniel
Q96LY4	supports transposable elements - Daniel
Q9BS81	supports transposable elements - Daniel
Q9H3B9	supports transposable elements - Daniel
Q9HA56	supports transposable elements - Daniel
Q9HAG0	supports transposable elements - Daniel
Q9HBW6	supports transposable elements - Daniel
Q9NW74	supports transposable elements - Daniel
Q9NW99	supports transposable elements - Daniel
Q9P1J1	supports transposable elements - Daniel
Q9UN80	supports transposable elements - Daniel
Q9Y5K0	supports transposable elements - Daniel
NP_291080.1 large numbers of X's in sequence lec                   
NP_067457.1 large numbers of X's in sequence lec                   
NP_536705.1 large numbers of X's in sequence lec                  
NP_666420.1 large numbers of X's in sequence lec                   
Q64152 large numbers of X's in sequence lec                      
P11276 large numbers of X's in sequence lec                      
O88329 large numbers of X's in sequence lec                      
Q9Z1L2 large numbers of X's in sequence lec                      
Q8VEW3 large numbers of X's in sequence lec                      
Q8JZM8 large numbers of X's in sequence lec 
Q96NT6 spuriously long introns in NCBI33/34 vac
Q12903 spuriously long introns in NCBI33/34 vac
Q96GA6 spuriously long introns in NCBI33/34 vac
Q8IV24 spuriously long introns in NCBI33/34 vac
Q16009 spuriously long introns in NCBI33/34 vac
Q9NR89 spuriously long introns in NCBI33/34 vac
P08399 un-genewiseable - predominantly ACTG vac
P24856 un-genewiseable - predominantly ACTG vac
O13028 un-genewiseable - predominantly ACTG vac
O13083 un-genewiseable - predominantly ACTG vac
Q8VIY9 un-genewiseable - predominantly ACTG vac
O53552 un-genewiseable - predominantly ACTG vac
O53553 un-genewiseable - predominantly ACTG vac
O53535 un-genewiseable - predominantly ACTG vac
O53557 un-genewiseable - predominantly ACTG vac
O53559 un-genewiseable - predominantly ACTG vac
Q8VIZ0 un-genewiseable - predominantly ACTG vac
Q8VIZ1 un-genewiseable - predominantly ACTG vac
P05790 un-genewiseable - predominantly ACTG vac
AAN10358 crashes blast
Q7TP96 Ab1-160 scp
Q64477 His2b protein (Histone H2B) (Fragment) scp
Q9CTS6 9530057J20Rik protein (Fragment) scp
Q9CRI0 ES cells cDNA, RIKEN full-length enriched library, clone:2410013L13, full insert sequence (Fragment) scp
Q8C890 Hypothetical protein (Fragment) scp
Q8BFY5 Hypothetical integrase scp
Q91YM3 Hypothetical protein scp
P80349 Fuctinin 3 (Fucosyltransferase inhibitor 3) (Fragment) scp
P50709 Cryptdin-11 precursor (Fragment) scp
O89059 QM protein (Fragment) scp
O70416 Putative pheromone receptor V2R4 (Fragment) scp
Q8C3Q3 Hypothetical protein (Fragment) scp
Q61787 ORF 2 scp
Q61786 ORF 1 scp
Q60712 ORF 1 protein scp
O00172 Line element doesnt look healthy eb
Q8TE30 HindIII repetitive element eb
Q9Y443 HindIII repetitive element eb
Q8N4M7 Hypothetical protein that is possibly based on a pseudogene
NP_775848 Hypothetical protein that is possibly based on a pseudogene
O60375 Hypothetical protein fragment 
O95133 Partial protein, although now has a HUGO id
Q8N7L3 Line element
Q8NAQ0 Line element
O00370 Line element
Q14755 Line element
Q8N281 Line element
Q8N9G8 Line element
Q8N212 Line element
Q8WY74 Line element
Q8N929 Line element
Q8N933 Line element
Q8NBE4 Line element
Q8N7V1 Line element
Q8N545 Line element
Q8N1T7 Line element
Q8WXC4 Line element
Q8WYV8 Line element
Q8N1K2 Line element
Q8NB08 Line element
Q9P074 hypothetical gene fragment that contains repeats - dta
Q8NF61 protein fragment - dta 
NP_775842 hypothetical protein - dta
Q7TNC3 Hypothetical protein	 - multiple pmatches vac
NP_899143.1 hypothetical protein - multiple pmatches vac
Q8C0W2 Mus musculus adult male testis cDNA - multiple pmatches vac
NP_035152.1 ovary testis transcribed - multiple pmatches vac
Q62012 Ott protein. - multiple pmatches vac
Q7M6U6 Pro protein (Fragment). - multiple pmatches vac
Q62478 XMR protein (Hypothetical protein) - multiple pmatches vac
Q80SV3 Envelope polyprotein. - multiple pmatches vac
O70313 VSAG protein. - multiple pmatches vac
Q62460 (clone BALB3N) - multiple pmatches vac
Q811N4 Envelope polyprotein. - multiple pmatches vac
Q61706 RNA for type IIB intracisternal A-particle (IAP) element encoding integrase - multiple pmatches vac
Q810S6 Hypothetical protein. - multiple pmatches vac
Q62461 Q62461 (clone BALB10N). - multiple pmatches vac
Q8R1L5 Similar to RIKEN cDNA 9030624G23 gene. - multiple pmatches vac
Q61590 M.musculus p12 GAG gene homologue (Fragment). - multiple pmatches vac
Q62458 (clone BALB14N). - multiple pmatches vac
Q8CCG8 similar to retrovirus-related reverse transcriptase homolog. - multiple pmatches vac
Q9D9T3 hypothetical Spindlin - multiple pmatches vac
Q63840 Fas antigen (Fragment). - multiple pmatches vac
Q99JK9 0610011I04Rik protein. - multiple pmatches vac
Q8C0A8 hypothetical Metallo- dependent hydrolases structure containing protein - multiple pmatches vac
Q9QUR4 Mus musculus L1 retrotransposon - multiple pmatches vac
O75029 FUT1 (Fragment). - multiple pmatches vac
O00361 P40. - multiple pmatches vac
O00369 P40.
Q15605 ORF1  - multiple pmatches vac
Q9UN81 Hypothetical protein ORF1. - multiple pmatches vac
Q9BXE6 FKSG49. - multiple pmatches vac
Q9BZ63 FKSG60. - multiple pmatches vac
Q9BZ53 FKSG64. - multiple pmatches vac
Q9BXE2 FKSG53. - multiple pmatches vac
Q9BZ65 FKSG58. - multiple pmatches vac
Q07826 X-linked retinopathy protein protein (Fragment). - multiple pmatches vac
Q86YP3 Polymerase (Fragment). - multiple pmatches vac
Q9BZ55 FKSG69. - multiple pmatches vac
Q9BZ57 FKSG67. - multiple pmatches vac
P61583 HERV-K_3q12.3 provirus Np9 protein  - multiple pmatches vac
P61581 HERV-K_22q11.21 provirus Np9 protein - multiple pmatches vac
Q9BXD8 FKSG57. - multiple pmatches vac
Q9NPS7 Hypothetical protein. - multiple pmatches vac
Q9BYU5 Keratin associated protein (Fragment). - multiple pmatches vac
Q9BYT5 Keratin associated protein KAP2.2 (Fragment). - multiple pmatches vac
Q9BYS0 Keratin associated protein 2.1b (Fragment.) - multiple pmatches vac
Q86VU6 RBMY1A1 protein. - multiple pmatches vac
Q15379 Y-chromosome RNA recognition motif protein (Fragment). - multiple pmatches vac
Q8NFC8 CYorf16 protein (Fragment). - multiple pmatches vac
P61571 HERV-K_12q14.1 provirus Rec protein. - multiple pmatches vac
O60358 Hypothetical protein A-575C2.4. - multiple pmatches vac
P61572 HERV-K_19q12 provirus Rec protein  - multiple pmatches vac.
P61573 HERV-K_6q14.1 provirus Rec protein  - multiple pmatches vac.
P61574 HERV-K_19p13.11 provirus Rec protein  - multiple pmatches vac.
P61575 HERV-K_8p23.1 provirus Rec protein  - multiple pmatches vac.
P61579 HERV-K_11q22.1 provirus Rec protein.  - multiple pmatches vac.
Q69383 HERV-K_7q22.1 provirus Rec protein   - multiple pmatches vac.
Q9BV49 Hypothetical protein.  - multiple pmatches vac.
Q9UBX2 Double homeobox protein DUX10.  - multiple pmatches vac.
Q14546 Homeobox-like sequence. Part of tandem repeat (Fragment)  - multiple pmatches vac..
Q8N747 Hypothetical protein.  - multiple pmatches vac.
O95746 PMS2L16 protein.  - multiple pmatches vac.
Q86WY7 Similar to Williams Beuren syndrome chromosome region 19.  - multiple pmatches vac.
Q15157 PMS4 protein (HPMS4 protein) (Fragment).  - multiple pmatches vac.
O62658 Canis familiaris LINE-1 element ORF2.
NP_001002783.1 gi|50582591|ref|NP_001002783.1| RIKEN cDNA 9530085L02 gene [Mus musculus] hit the rat genome 20000 times lec (for rat)
Q63499 6659 Q63499 Q63499 Pot.ORF (Fragment). (for rat)
Q63298 322 Q63298 Q63298 Rat L1Rn B7 repetitive DNA element (Fragment). (for rat)
Q7TPS2 15 Q7TPS2 Q7TPS2 Hypothetical protein. (for rat)
Q80WC8 10 Q80WC8 Q80WC8 Hist1h4i protein (Fragment).(for rat)
Q811M0 10 Q811M0 Q811M0 Hist1h4h protein (Fragment). (for rat)
Q8BYP8 23 Q8BYP8 Q8BYP8 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230056F15 product:hypothetical Tyrosine-rich region containing protein, full insert sequence. (for rat)
Q61918 11 Q61918 Q61918 Pol protein (Fragment). (for rat lec)
Q63498 Q63498 Pot.ORF (Fragment). (for rat lec)
O70449 Putative retrovirus-related gag1 gene (matches rat - dta)
Q8BLS1 RIKEN sequence very similar to O70449, which is a retrovirus-like gene (matches rat - dta)
Q9CRM2 172 Q9CRM2_MOUSE Q9CRM2 Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720473M11 product:weakly similar to RETROVIRUS-RELATED GAG POLYPROTEIN (Fragment). from rat retroviral protein
Q6LCX0 1452 Q6LCX0_MOUSE Q6LCX0 Mus musculus clone CCD40 LINE-1 element ORF1 (Fragment).
Q8BR13 1583 Q8BR13_MOUSE Q8BR13 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230325I02 product:L1 repeat, Tf subfamily, member 29, full insert sequence. (Fragment).
Q8BHB5 7314 Q8BHB5_MOUSE Q8BHB5 Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430076C16 product:L1 repeat, Tf subfamily, member 30, full insert sequence (Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430081H21 product:SIMILAR TO L1 REPEAT, TF SUBFAMILY, MEMBER 30 homolog).
Q61785 103 Q61785_MOUSE Q61785 ORF2; 5' end undetermined. (Fragment).
Q8R1U0 121 Q8R1U0_MOUSE Q8R1U0 Hypothetical protein.
Q8C4B3 140 Q8C4B3_MOUSE Q8C4B3 Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230070D10 product:hypothetical protein, full insert sequence.
Q7TQ37 189 Q7TQ37_MOUSE Q7TQ37 Pol protein.
NP_899122.1 332 gi|50233844|ref|NP_899122.1| hypothetical protein LOC280487 [Mus musculus]
Q7TQ38 439 Q7TQ38_MOUSE Q7TQ38 Gag protein.
Q8CDH6 491 Q8CDH6_MOUSE Q8CDH6 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932416G22 product:hypothetical protein, full insert sequence.
Q9Z155 506 Q9Z155_MOUSE Q9Z155 Reverse transcriptase (Fragment).
NP_001005856.1 728 gi|54312064|ref|NP_001005856.1| reverse transcriptase [Mus musculus]
P11369 898 POL2_MOUSE P11369 Retrovirus-related Pol polyprotein LINE-1 (Long interspersed element- 1) (L1) [Contains: Reverse transcriptase (EC 2.7.7.49); Endonuclease].
O08906 1222 O08906_MOUSE O08906 Reverse transcriptase (Fragment).
O54849 1242 O54849_MOUSE O54849 Hypothetical protein.
O54850 1304 O54850_MOUSE O54850 Endonuclease/reverse transcriptase.
Q9QUJ6 1387 Q9QUJ6_MOUSE Q9QUJ6 Mus musculus DNA, L1 element insertion in intron 3 of Mitf gene.
Q9R225 1392 Q9R225_MOUSE Q9R225 Mus musculus L1 retrotransposon, Tf subfamily L1Md-Tf2, partial sequence. (Fragment).
O08905 1410 O08905_MOUSE O08905 RNP particle component (Fragment) 
P11367 12 POL3_MOUSE P11367 Retrovirus-related Pol polyprotein (Endonuclease) (Fragment).
Q7M6U5 12 Q7M6U5_MOUSE Q7M6U5 Pol protein (Fragment).
P10404 13 ENV1_MOUSE P10404 Retrovirus-related Env polyprotein [Contains: Coat protein GP70] (Fragment).
Q80SV2 14 Q80SV2_MOUSE Q80SV2 Truncated envelope polyprotein.
Q811J2 11 Q811J2_MOUSE Q811J2 Hypothetical protein (Fragment). like a gag pol protein (lec)
Q8C2B1 18 Q8C2B1_MOUSE Q8C2B1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full- length enriched library, clone:E430033N13 product:retrovirus-related pol polyprotein homolog.
Q7TQ39 23 Q7TQ39_MOUSE Q7TQ39 Gag protein.
Q8BMX1 24 Q8BMX1_MOUSE Q8BMX1 Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700079J08 product:GAG PROTEIN homolog (Fragment).
P10400 31 POL1_MOUSE P10400 Retrovirus-related Pol polyprotein [Contains: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment).
Q66JW8 19 Q66JW8_MOUSE Q66JW8 Hypothetical protein.
). like a Gag protein
Q99K18 25 Q99K18_MOUSE Q99K18 BC005512 protein (Fragment). Pol protein
Q8BTS2 95 Q8BTS2_MOUSE Q8BTS2 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full- length enriched library, clone:E430029J22 product:ANTIGEN LEC-A homolog (Fragment). Gag protein
Q9D9F4 Translation of a L1-like RIKEN sequence (dta).
NP_082840.1 A seemingly innocent RIKEN sequence, but similar enough to L1 elements to cause 80-odd single exon gene predictions (dta).
Q9D2T0 Contains integrase and viral capsid homologies (dta).
Q80YX9 Homologous to integrase domain (dta).
Q8VDY3 Member of integrase C superfamily (dta).
NP_112232 Tiny protein that has been removed from RefSeq.  Formed the basis 51 human genes (dta).
Q91VY0 56 Q91VY0_MOUSE Q91VY0 Similar to L1 repeat, Tf subfamily, member 30. 
Q06666 T2_MOUSE Q06666 Octapeptide-repeat protein T2.
Q658T9 63 Q658T9_HUMAN Q658T9 Hypothetical protein DKFZp666K083. hits rmacaque that many times who knows how many on human
Q8NGN9 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NH14 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NH24 Seven transmembrane helix receptor. (smjs TO MANY X)
Q7Z5M5 TMC3 protein. (smjs TO MANY X)
Q8IXD9 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NH25 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NH15 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NGV8 Seven transmembrane helix receptor. (smjs TO MANY X)
Q6ZVX2 Similar to several ALUs (smjs)
Q8N9E1 Similar to several ALUs (smjs)
Q6Q3U3 Similar to several ALUs (smjs)
Q9UJZ4 similar to Line-1s (smjs)
Q6ZWA1 similar to Line-1s (smjs)
Q6RGF7 similar to Line-1s (smjs)
Q7KZ41 similar to Line-1s (smjs)
O97916 reverse transcriptase like (smjs)
O88912 Mus musculus domesticus L1 retrotransposon, Tf subfamily L1Md-Tf8, partial sequence (smjs)
Q12880 Retrotransposable L1 element LRE2 from chromosome 1q. (smjs)
P22444 Bone morphogenetic protein 3 (klh TOO MANY X)
P33672 Proteasome subunit beta type 3 (klh TOO MANY X)
Q9TS87 Transgelin (klh TOO MANY X)
Q28051 Amelogenin (klh TOO MANY X)
P41413 Proprotein convertase subtilisin/kexin type 5 precursor (jb16)
Q6WDI9 Recombination activating gene 1 (Fragment) (jb16)
Q9JLP4 Aryl-hydrocarbon interacting-protein like-1 (Fragment) (jb16)
Q8BN15 Activated spleen cDNA, RIKEN full-length enriched library, clone:F830048M02 product:hypothetical protein, full insert sequence. (Fragment). (jb16)
Q63290  7697    Q63290.1 Q63290_RAT R.norvegicus L1 retroposon, ORF2 mRNA. (Fragment).(jb16)
Q63774  1948    Q63774.1 Q63774_RAT Hypothetical protein.MULTIPLE pmatch. (jb16)
Q63776  2298    Q63776.1 Q63776_RAT Hypothetical protein.MULTIPLE pmatch. (jb16)
Q63777  2988    Q63777.1 Q63777_RAT Hypothetical protein.MULTIPLE pmatch. (jb16)
Q4JFW4  339 Q4JFW4_RAT Nucleic acid binding protein.LINE (jb16)
Q4JFV3  313 Q4JFV3_RAT Nucleic acid binding protein.LINE (jb16)
Q6QI73  211 SIMILARITY: Contains 1 reverse transcriptase domain.(jb16)
Q4JFW3  114 LINE-1 retrotransposons(jb16)
Q63854  91  Q63854_RAT     PRELIMINARY;   PRT;    49 AA(jb16)
Q4JFW1  48  LINE-1 retrotransposons(jb16)
Q63305  48  Contains 1 reverse transcriptase domain(jb16)
Q3T9P7  39 Hypothetical protein(jb16)
Q4JFW2  31 LINE-1 retrotransposons(jb16)
Q61870  27 Q61870_MOUSE MCF-related viral RNAs(jb16)
Q61533  27 Q61533_MOUSE MCF-related viral RNAs(jb16)
Q6TUF9  14 Q6TUF9_RAT Contains 2 reverse transcriptase domains(jb16)
Q6QI35  12 Q6QI35_RAT Contains 1 reverse transcriptase domain(jb16)
Q91YB4  50 Transposase_22(jb16)
Q6TUG5  69 Transposase_22(jb16)
Q6TUH6  95 Transposase_22(jb16)
NP_034375  Friend virus susceptibility 4 [Mus musculus]  (jhv) 
Q6NXV5 Q6NXV5_MOUSE Similar to Retrovirus-related POL polyprotein (Endonuclease).  (jhv) 
P70355 P70355_MOUSE Gag-Pol polyprotein.  (jhv) 
Q6YIY0 Q6YIY0_MOUSE Gag protein.  (jhv) 
Q7M6W5 Q7M6W5_MOUSE Gag protein.  (jhv) 
Q61540 Q61540_MOUSE Gag protein.  (jhv) 
Q61977 Q61977_MOUSE M.musculus endogenous provirus env (Fragment).  (jhv) 
Q61975 Q61975_MOUSE M.musculus endogenous provirus env (Fragment).  (jhv) 
Q9ERJ2 Q9ERJ2_MOUSE Gag protein (Fragment).  (jhv) 
Q9D8A9 Q9D8A9_MOUSE simiilar to LINE PROTEIN.  (jhv) 
Q7M6U4 Q7M6U4_MOUSE Gag protein.  (jhv) 
Q9ERJ4 Q9ERJ4_MOUSE Gag protein   (jhv) 
Q3UGR7 Q3UGR7_MOUSE Melanocyte cDNA, RIKEN full-length enriched library, clone:G270040B10 product:hypothetical Retrovirus capsid, N-terminal core containing protein, full insert sequence. (Fragment).  (jhv) 
Q61927 Q61927_MOUSE Gag-myb protein (Fragment).  (jhv) 
Q9ERJ0 Q9ERJ0_MOUSE Gag protein (Fragment).  (jhv) 
Q04365 Q04365_MOUSE L1Md-9 repetitive sequence.  (jhv) 
Q3UXZ8 Q3UXZ8_MOUSE GAG protein   (jhv) 
Q61213 Q61213_MOUSE Gag.  (jhv) 
Q61708 Q61708_MOUSE Gag protein.  (jhv) 
Q3UW54 Q3UW54_MOUSE L1 repeat homolog.  (jhv) 
Q61709 Q61709_MOUSE DNA for type IIB intracisternal A-particle element encoding integrase and gag.  (jhv) 
Q3U565 Q3U565_MOUSE hypothetical Retroviral integrase, C-terminal/Integrase, catalytic domain containing protein, full insert sequence. (Fragment).  (jhv) 
Q60732 Q60732_MOUSE Mus musculus clone NCD40 LINE-1 element ORF1 (Fragment).  (jhv) 
Q60723 Q60723_MOUSE Mus musculus clone NCD33 LINE-1 element ORF1 (Fragment).  (jhv) 
Q60725 Q60725_MOUSE Mus musculus clone NCD39 LINE-1 element ORF1 (Fragment).  (jhv) 
Q61784 Q61784_MOUSE L1Md-A13 repetitive sequence.  (jhv) 
Q60727 Q60727_MOUSE Mus musculus clone NCD46 LINE-1 element ORF1 (Fragment).  (jhv) 
NP_035003 baculoviral IAP repeat-containing 1c [Mus musculus]  (jhv) 
Q60728 Q60728_MOUSE Mus musculus clone NCD47 LINE-1 element ORF1 (Fragment).  (jhv) 
NP_001014998.1 L1 transposable element jhv
Q3UPG4 1755 Q3UPG4.1 Q3UPG4_MOUSE L1 transposable element containing protein jhv
Q3U193 520 Q3U193.1 Q3U193_MOUSE Activated spleen  jhv
Q3UT63 176 Q3UT63.1 Q3UT63_MOUSE similar to GAG Q7R6V2_PLAYO jhv
Q61705 161 Q61705.1 Q61705_MOUSE similar probable Pol polyprotein reverse transcriptase jhv
NP_035003.2 1024 gi|66348093|ref|NP_035003.2| baculoviral IAP repeat-containing 1c  jhv
Q3UNK8 27 Q3UNK8.1 Q3UNK8_MOUSE retroviral-type family profile/F- MuLV receptor-binding/Peptidase aspartic
Q3TZR4 41 Q3TZR4.1 Q3TZR4_MOUSE product:hypothetical L1 transposable element containing protein
Q7LZ40.1 Q7LZ40_ORYLA Hyosophorin (Fragment).	(ba1)
Q15462 Cell surface glycoprotein (Fragment) (vac TOO MANY X)
Q8NH34 Seven transmembrane helix receptor. (vac TOO MANY X)
Q3LAZ2 MHC class I antigen (Fragment). (vac TOO MANY X)
NP_001018022.1 hypothetical protein LOC389286 [Homo sapiens] (vac multiple pmatch hits)
Q14547 Homeobox-like sequence. Part of tandem repeat (Fragment). (vac multiple pmatch hits)
Q3KP43 Hypothetical protein (vac multiple pmatch hits)
Q5T7B9 Chromosome 6 open reading frame 88 (Fragment). (vac multiple pmatch hits)
P49646.1 Very very hypothetical protein RMSA-1 (vac contains Alu elements)
P39188 Alu subfamily J sequence contamination warning entry. (vac)
P39189 Alu subfamily SB sequence contamination warning entry. (vac)
P39190 Alu subfamily SB1 sequence contamination warning entry. (vac)
P39191 Alu subfamily SB2 sequence contamination warning entry. (vac)
P39192 Alu subfamily SC sequence contamination warning entry. (vac)
P39193  Alu subfamily SP sequence contamination warning entry (vac)
P39194 Alu subfamily SQ sequence contamination warning entry. (vac)
P39195 Alu subfamily SX sequence contamination warning entry. (vac)
Q6XYC1 Q6XYC1_HUMAN LP3428 (vac multiple pmatch hits)
Q96PI4 HERV-K_1q23.3 provirus ancestral Gag polyprotein (vac)
P63123 HERV-K_1q23.3 provirus ancestral Pro protein (vac)
O42043 HERV-K_1q23.3 provirus ancestral Env polyprotein (vac)
O14749 	pol derived Reverse transcriptase [Fragment] (vac)
O14750 pol derived Reverse transcriptase [Fragment] (vac)
O14751 pol derived Reverse transcriptase [Fragment] (vac)
O14752 pol derived Reverse transcriptase [Fragment] (vac)
Q14272 Endogenous retroviral gene (HLM-2). [Fragment] (vac)
Q1W5W7 Putative gag-pol protein (vac)
Q330L6 Reverse transcriptase [Fragment] (vac)
Q330L7 Reverse transcriptase [Fragment] (vac)
Q330L8 Reverse transcriptase [Fragment] (vac)
Q3UWB7 Gag protein homolog [Fragment] (vac)
Q4JNY2 Pol [Fragment] (vac)
Q330L9 Reverse transcriptase [Fragment] (vac)
Q4JNY4 Gag [Fragment] (vac)
Q330M0 	Reverse transcriptase [Fragment] (vac)
Q60505 Chinese hamster provirus (vac)
Q330M1 Reverse transcriptase [Fragment] (vac)
Q04099 Pol protein [Fragment]  (vac)
Q330M2 Reverse transcriptase [Fragment] (vac)
Q330M3 	Reverse transcriptase [Fragment] (vac)
Q7M6W3 	Pol protein [Fragment] (vac)
Q6ZMV2 CDNA FLJ16646 fis, clone TESTI4032090 (vac)
Q6ZN85 CDNA FLJ16337 fis, clone TESTI1000266 (vac)
Q6ZQX8 	CDNA FLJ46816 fis, clone TRACH3036932 (vac)
Q71VD1 	Reverse transcriptase [Fragment] (vac)
Q78E13 RNA for type IIB intracisternal A-particle (IAP) element encoding integrase, clone 111. [Fragment] (vac)
Q7M6W6 Gag protein (vac)
Q866Y8 Rabbit gag (fragment) (vac)
Q8BV19 Mouse Riken, hypothetical gag protein (vac)
Q8MJF4 Rabbit pol fragment (vac)
Q8MJF6 Rabbit gag homologue (vac)
Q8MJF7 Rabbit pol fragment (vac)
Q8NB65 predicted from human cDNA, retroviral gag homologue (vac)
Q8NFP1 Human pol fragment (vac)
Q8NFP3 Human gag protein (vac)
Q99J11 BC005685 protein [Fragment] - Mouse gag (vac)
Q9ERJ1 Mouse gag fragment (vac)
Q9GLF8 Possum pol fragment (vac)
Q9N172 Possum pol fragment (vac)
Q9N174 Possum gag polyprotein (vac)
Q9N1R8 Sheep pol (vac)
Q9N1S0 Sheep gag (vac)
Q9QW50 Deer mouse reverse transcriptase fragment (vac)
Q9TTD5 Sheep gag (vac)
Q9TUZ2 Sheep reverse transcriptase fragment (vac)
Q9TUZ4 Sheep reverse transcriptase fragment (vac)
Q9TUZ6 Sheep reverse transcriptase fragment (vac)
Q9XT38 Sheep reverse transcriptase fragment (vac)
Q9XT40 Sheep reverse transcriptase fragment (vac)
P10266 POK10_HUMAN Human HERV-K_5q33.3 provirus ancestral Pol protein I(vac)
P10399 POL1_CHICK Chicken 	Retrovirus-related Pol polyprotein [Fragments] (vac)
P62683 GAK1_HUMAN Human HERV-K_12q14.1 provirus ancestral Gag polyprotein (vac)
P62684 GAK5_HUMAN Human HERV-K_19p13.11 provirus ancestral Gag polyprotein (vac)
P62685 GAK6_HUMAN Human HERV-K_8p23.1 provirus ancestral Gag polyprotein (vac)
P62686 GAK13_HUMAN Human HERV-K_1p13.3 provirus ancestral Gag polyprotein (vac)
P62687 GAK14_HUMAN Human HERV-K_16p3.3 provirus ancestral Gag polyprotein (vac)
P62688 GAK15_HUMAN Human HERV-K_3q21.2 provirus ancestral Gag polyprotein (vac)
P62689 GAK17_HUMAN HERV-K_11q22.1 provirus ancestral Gag polyprotein (vac)
P62690 GAK18_HUMAN HERV-K_22q11.23 provirus ancestral Gag polyprotein (vac)
P62691 GAK19_HUMAN HERV-K_4p16.1 provirus ancestral Gag polyprotein (vac)
P63126 GAK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag polyprotein (vac)
P63128 POK4_HUMAN HERV-K_6q14.1 provirus ancestral Pol protein (vac)
P63130 GAK12_HUMAN HERV-K_1q22 provirus ancestral Gag polyprotein (vac)
P63132 POK5_HUMAN HERV-K_19p13.11 provirus ancestral Pol protein (vac)
P63133 POK6_HUMAN HERV-K_8p23.1 provirus ancestral Pol protein (vac)
P63134 POK9_HUMAN HERV-K_5q13.3 provirus ancestral Pol protein (vac)
P63136 POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein (vac)
P63145 GAK11_HUMAN HERV-K_22q11.21 provirus ancestral Gag polyprotein (vac)
P87889 GAK10_HUMAN HERV-K_5q33.3 provirus ancestral Gag polyprotein (vac)
P87893 POK11_HUMAN HERV-K_22q11.21 provirus ancestral Pol protein (vac)
Q7LDI9 GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag polyprotein (vac)
Q9BXR3 POK2_HUMAN HERV-K_7p22.1 provirus ancestral Pol protein (vac)
Q9HDB9 GAK8_HUMAN HERV-K_3q12.3 provirus ancestral Gag polyprotein (vac)
Q9QC07 POK7_HUMAN HERV-K_1q23.3 provirus ancestral Pol protein (vac)
Q9UKH8 GAK9_HUMAN HERV-K_5q13.3 provirus ancestral Gag polyprotein (vac)
Q9UQG0 POK20_HUMAN HERV-K_3q27.3 provirus ancestral Pol protein (vac)
Q9WJR5 POK3_HUMAN HERV-K_19q12 provirus ancestral Pol protein (vac)
Q9YNA8 GAK3_HUMAN HERV-K_19q12 provirus ancestral Gag polyprotein (vac)<commit_msg>more proviral sequences<commit_after>BAA25253 Similar O62658_CANFA LINE-1 element ORF2 parent: AB012223.1 (jhv)
AB012223 LINE-1 element (jhv)
Q8BRF5 Similar to Gag-Protein / Polyprotein (jhv)
Q99KP9 Similar to Retrovirus-related Polyprotein (jhv)
Q3TL09 Similar to Gag-protein (jhv) 
Q61530 Retrovirus-related (jhv)
NP_001013837 Novel protein / simlar to gag's (jhv)
NP_001012326 Similar to Retrovirus-related POL pol (jhv)
Q5SVZ4 Novel protein / simlar to gag's (jhv)
Q3U4K5 simialar to Envelope protein (jhv) 
Q80TD1 similar to Putative gag-pro-pol polyprotein (jhv) 
Q8VE82 Hypothetical protein / Fragment similar proviral gag (jhv)
NP_032607 similar to Evnelope pol. pro.  (jhv)
NP_001013811 Hypothetical protein / rev. transcriptase (jhv) 
Q8C1Z1 similar Retrovirus-related Pol polyprotein / L1 retrotrans. (jhv) 
NP_001004189 similar Retrovirus-related Pol polyprotein jhv
Q6T3U6 similar Reverse transcriptase / Gag-Pol polypro.  jhv 
Q3UF90 similar Mus musculus domesticus L1 retrotrans.  jhv 
Q8VCM6 similar Mus musculus domesticus L1 retrotrans jhv 
Q8BM31 10 Q8BM31 Q8BM31 Similar to L1 repeat.
Q63304 10 Q63304 Q63304 ORF2 protein.
Q8BXC1 11 Q8BXC1 Q8BXC1 Weakly similar to PRO-1 protein.
Q8BI91 32 Q8BI91 Q8BI91 Weakly similar to repetitive protein BKM.
Q8BIN7 37 Q8BIN7 Q8BIN7 Similar to LINE protein.
Q8K0U5 49 Q8K0U5 Q8K0U5 Similar to RIKEN cDNA 1110004B06 gene.
Q91YJ9 68 Q91YJ9 Q91YJ9 Similar to RIKEN cDNA C330014O21 gene.
Q8BUJ3 78 Q8BUJ3 Q8BUJ3 Similar to ORF7 protein.
Q8BQ61 13 Q8BQ61 Q8BQ61 Hypothetical protein.
Q63779 13 Q63779 Q63779 Hypothetical 76.2 kDa protein.
Q63775 13 Q63775 Q63775 Hypothetical 38.7 kDa protein.
O08698 15 O08698 O08698 Putative RNA binding protein 1 (Fragment).
Q8C7B1 17 Q8C7B1 Q8C7B1 Hypothetical protein.
Q8BZN1 17 Q8BZN1 Q8BZN1 Hypothetical tyrosine-rich region containing protein.
Q8BNS2 19 Q8BNS2 Q8BNS2 Hypothetical protein.
P97692 24 P97692 P97692 L1 retrotransposon ORF2 (Fragment).
Q63778 26 Q63778 Q63778 Hypothetical 43.7 kDa protein.
O08870 39 O08870 O08870 Putative RNA binding protein 1 (Fragment).
P11260 40 YO11_MOUSE P11260 Hypothetical protein ORF-1137.
Q8C1S6 88 Q8C1S6 Q8C1S6 Mouse endogenous murine leukemia virus modified polytropic provirus DNA (Fragment).
Q63309 109 Q63309 Q63309 ORF7 protein.
Q8C256 111 Q8C256 Q8C256 Hypothetical protein.
Q63502 246 Q63502 Q63502 ORF1 protein.
Q91WW0 284 Q91WW0 Q91WW0 Hypothetical protein (Expressed sequence AI591529).
Q8CEJ9 311 Q8CEJ9 Q8CEJ9 Weakly similar to Bkm-like sex-determining region hypothetical protein CS319.
Q8BTF6 327 Q8BTF6 Q8BTF6 Inferred: proteasome subunit alpha type 6 (Fragment).
NP_598602.1 360 gi|19527058|ref|NP_598602.1| (NM_133841) expressed sequence AI591529 [Mus musculus]
Q63308 508 Q63308 Q63308 ORF6 protein.
Q8BNK6 992 Q8BNK6 Q8BNK6 Hypothetical protein (Fragment).
Q8CAN8 1415 Q8CAN8 Q8CAN8 Hypothetical protein.
Q9CXB3 1867 Q9CXB3 Q9CXB3 8430416G17Rik protein.
Q8CBN4 18368 Q8CBN4 Q8CBN4 Similar to spermatid-specific protein T1.
Q8K080 Hypothetical protein. lec
Q99LR7 Hypothetical 35.7 kDa protein (Fragment). lec
Q99KW1 Hypothetical 28.1 kDa protein (Fragment). lec
O88262 Mszf59-2 (Fragment). lec
Q9CRN0 6720475J19Rik protein (Fragment) lec
P11370 Retrovirus-related ENV polyprotein from Fv-4 locus. lec
Q9R137 Cyclophilin A (Peptidyl-prolyl cis-trans isomerase) lec
Q8K081 Hypothetical protein. lec
Q9CST9 weakly similar to GAG PROTEIN (Fragment). lec
Q8R596 Hypothetical 4.4 kDa protein. lec
Q8BNJ4 Transient receptor protein 7. lec
Q60713 Reverse transcriptase. lec
P17013 poly X vac
Q99784 NOE1_HUMAN Q99784 Noelin precursor vac
AK057787	supports transposable elements - Daniel
NP_079244	supports transposable elements - Daniel
O00360	supports transposable elements - Daniel
O00362	supports transposable elements - Daniel
O00363	supports transposable elements - Daniel
O00366	supports transposable elements - Daniel
O00368	supports transposable elements - Daniel
O00372	supports transposable elements - Daniel
O00375	supports transposable elements - Daniel
O00378	supports transposable elements - Daniel
O00549	supports transposable elements - Daniel
P08547	supports transposable elements - Daniel
Q02364	supports transposable elements - Daniel
Q12881	supports transposable elements - Daniel
Q14269	supports transposable elements - Daniel
Q14270	supports transposable elements - Daniel
Q14287	supports transposable elements - Daniel
Q14288	supports transposable elements - Daniel
Q14710	supports transposable elements - Daniel
Q14711	supports transposable elements - Daniel
Q14712	supports transposable elements - Daniel
Q14713	supports transposable elements - Daniel
Q15604	supports transposable elements - Daniel
Q15606	supports transposable elements - Daniel
Q96GQ3	supports transposable elements - Daniel
Q96LU6	supports transposable elements - Daniel
Q96LY4	supports transposable elements - Daniel
Q9BS81	supports transposable elements - Daniel
Q9H3B9	supports transposable elements - Daniel
Q9HA56	supports transposable elements - Daniel
Q9HAG0	supports transposable elements - Daniel
Q9HBW6	supports transposable elements - Daniel
Q9NW74	supports transposable elements - Daniel
Q9NW99	supports transposable elements - Daniel
Q9P1J1	supports transposable elements - Daniel
Q9UN80	supports transposable elements - Daniel
Q9Y5K0	supports transposable elements - Daniel
NP_291080.1 large numbers of X's in sequence lec                   
NP_067457.1 large numbers of X's in sequence lec                   
NP_536705.1 large numbers of X's in sequence lec                  
NP_666420.1 large numbers of X's in sequence lec                   
Q64152 large numbers of X's in sequence lec                      
P11276 large numbers of X's in sequence lec                      
O88329 large numbers of X's in sequence lec                      
Q9Z1L2 large numbers of X's in sequence lec                      
Q8VEW3 large numbers of X's in sequence lec                      
Q8JZM8 large numbers of X's in sequence lec 
Q96NT6 spuriously long introns in NCBI33/34 vac
Q12903 spuriously long introns in NCBI33/34 vac
Q96GA6 spuriously long introns in NCBI33/34 vac
Q8IV24 spuriously long introns in NCBI33/34 vac
Q16009 spuriously long introns in NCBI33/34 vac
Q9NR89 spuriously long introns in NCBI33/34 vac
P08399 un-genewiseable - predominantly ACTG vac
P24856 un-genewiseable - predominantly ACTG vac
O13028 un-genewiseable - predominantly ACTG vac
O13083 un-genewiseable - predominantly ACTG vac
Q8VIY9 un-genewiseable - predominantly ACTG vac
O53552 un-genewiseable - predominantly ACTG vac
O53553 un-genewiseable - predominantly ACTG vac
O53535 un-genewiseable - predominantly ACTG vac
O53557 un-genewiseable - predominantly ACTG vac
O53559 un-genewiseable - predominantly ACTG vac
Q8VIZ0 un-genewiseable - predominantly ACTG vac
Q8VIZ1 un-genewiseable - predominantly ACTG vac
P05790 un-genewiseable - predominantly ACTG vac
AAN10358 crashes blast
Q7TP96 Ab1-160 scp
Q64477 His2b protein (Histone H2B) (Fragment) scp
Q9CTS6 9530057J20Rik protein (Fragment) scp
Q9CRI0 ES cells cDNA, RIKEN full-length enriched library, clone:2410013L13, full insert sequence (Fragment) scp
Q8C890 Hypothetical protein (Fragment) scp
Q8BFY5 Hypothetical integrase scp
Q91YM3 Hypothetical protein scp
P80349 Fuctinin 3 (Fucosyltransferase inhibitor 3) (Fragment) scp
P50709 Cryptdin-11 precursor (Fragment) scp
O89059 QM protein (Fragment) scp
O70416 Putative pheromone receptor V2R4 (Fragment) scp
Q8C3Q3 Hypothetical protein (Fragment) scp
Q61787 ORF 2 scp
Q61786 ORF 1 scp
Q60712 ORF 1 protein scp
O00172 Line element doesnt look healthy eb
Q8TE30 HindIII repetitive element eb
Q9Y443 HindIII repetitive element eb
Q8N4M7 Hypothetical protein that is possibly based on a pseudogene
NP_775848 Hypothetical protein that is possibly based on a pseudogene
O60375 Hypothetical protein fragment 
O95133 Partial protein, although now has a HUGO id
Q8N7L3 Line element
Q8NAQ0 Line element
O00370 Line element
Q14755 Line element
Q8N281 Line element
Q8N9G8 Line element
Q8N212 Line element
Q8WY74 Line element
Q8N929 Line element
Q8N933 Line element
Q8NBE4 Line element
Q8N7V1 Line element
Q8N545 Line element
Q8N1T7 Line element
Q8WXC4 Line element
Q8WYV8 Line element
Q8N1K2 Line element
Q8NB08 Line element
Q9P074 hypothetical gene fragment that contains repeats - dta
Q8NF61 protein fragment - dta 
NP_775842 hypothetical protein - dta
Q7TNC3 Hypothetical protein	 - multiple pmatches vac
NP_899143.1 hypothetical protein - multiple pmatches vac
Q8C0W2 Mus musculus adult male testis cDNA - multiple pmatches vac
NP_035152.1 ovary testis transcribed - multiple pmatches vac
Q62012 Ott protein. - multiple pmatches vac
Q7M6U6 Pro protein (Fragment). - multiple pmatches vac
Q62478 XMR protein (Hypothetical protein) - multiple pmatches vac
Q80SV3 Envelope polyprotein. - multiple pmatches vac
O70313 VSAG protein. - multiple pmatches vac
Q62460 (clone BALB3N) - multiple pmatches vac
Q811N4 Envelope polyprotein. - multiple pmatches vac
Q61706 RNA for type IIB intracisternal A-particle (IAP) element encoding integrase - multiple pmatches vac
Q810S6 Hypothetical protein. - multiple pmatches vac
Q62461 Q62461 (clone BALB10N). - multiple pmatches vac
Q8R1L5 Similar to RIKEN cDNA 9030624G23 gene. - multiple pmatches vac
Q61590 M.musculus p12 GAG gene homologue (Fragment). - multiple pmatches vac
Q62458 (clone BALB14N). - multiple pmatches vac
Q8CCG8 similar to retrovirus-related reverse transcriptase homolog. - multiple pmatches vac
Q9D9T3 hypothetical Spindlin - multiple pmatches vac
Q63840 Fas antigen (Fragment). - multiple pmatches vac
Q99JK9 0610011I04Rik protein. - multiple pmatches vac
Q8C0A8 hypothetical Metallo- dependent hydrolases structure containing protein - multiple pmatches vac
Q9QUR4 Mus musculus L1 retrotransposon - multiple pmatches vac
O75029 FUT1 (Fragment). - multiple pmatches vac
O00361 P40. - multiple pmatches vac
O00369 P40.
Q15605 ORF1  - multiple pmatches vac
Q9UN81 Hypothetical protein ORF1. - multiple pmatches vac
Q9BXE6 FKSG49. - multiple pmatches vac
Q9BZ63 FKSG60. - multiple pmatches vac
Q9BZ53 FKSG64. - multiple pmatches vac
Q9BXE2 FKSG53. - multiple pmatches vac
Q9BZ65 FKSG58. - multiple pmatches vac
Q07826 X-linked retinopathy protein protein (Fragment). - multiple pmatches vac
Q86YP3 Polymerase (Fragment). - multiple pmatches vac
Q9BZ55 FKSG69. - multiple pmatches vac
Q9BZ57 FKSG67. - multiple pmatches vac
P61583 HERV-K_3q12.3 provirus Np9 protein  - multiple pmatches vac
P61581 HERV-K_22q11.21 provirus Np9 protein - multiple pmatches vac
Q9BXD8 FKSG57. - multiple pmatches vac
Q9NPS7 Hypothetical protein. - multiple pmatches vac
Q9BYU5 Keratin associated protein (Fragment). - multiple pmatches vac
Q9BYT5 Keratin associated protein KAP2.2 (Fragment). - multiple pmatches vac
Q9BYS0 Keratin associated protein 2.1b (Fragment.) - multiple pmatches vac
Q86VU6 RBMY1A1 protein. - multiple pmatches vac
Q15379 Y-chromosome RNA recognition motif protein (Fragment). - multiple pmatches vac
Q8NFC8 CYorf16 protein (Fragment). - multiple pmatches vac
P61571 HERV-K_12q14.1 provirus Rec protein. - multiple pmatches vac
O60358 Hypothetical protein A-575C2.4. - multiple pmatches vac
P61572 HERV-K_19q12 provirus Rec protein  - multiple pmatches vac.
P61573 HERV-K_6q14.1 provirus Rec protein  - multiple pmatches vac.
P61574 HERV-K_19p13.11 provirus Rec protein  - multiple pmatches vac.
P61575 HERV-K_8p23.1 provirus Rec protein  - multiple pmatches vac.
P61579 HERV-K_11q22.1 provirus Rec protein.  - multiple pmatches vac.
Q69383 HERV-K_7q22.1 provirus Rec protein   - multiple pmatches vac.
Q9BV49 Hypothetical protein.  - multiple pmatches vac.
Q9UBX2 Double homeobox protein DUX10.  - multiple pmatches vac.
Q14546 Homeobox-like sequence. Part of tandem repeat (Fragment)  - multiple pmatches vac..
Q8N747 Hypothetical protein.  - multiple pmatches vac.
O95746 PMS2L16 protein.  - multiple pmatches vac.
Q86WY7 Similar to Williams Beuren syndrome chromosome region 19.  - multiple pmatches vac.
Q15157 PMS4 protein (HPMS4 protein) (Fragment).  - multiple pmatches vac.
O62658 Canis familiaris LINE-1 element ORF2.
NP_001002783.1 gi|50582591|ref|NP_001002783.1| RIKEN cDNA 9530085L02 gene [Mus musculus] hit the rat genome 20000 times lec (for rat)
Q63499 6659 Q63499 Q63499 Pot.ORF (Fragment). (for rat)
Q63298 322 Q63298 Q63298 Rat L1Rn B7 repetitive DNA element (Fragment). (for rat)
Q7TPS2 15 Q7TPS2 Q7TPS2 Hypothetical protein. (for rat)
Q80WC8 10 Q80WC8 Q80WC8 Hist1h4i protein (Fragment).(for rat)
Q811M0 10 Q811M0 Q811M0 Hist1h4h protein (Fragment). (for rat)
Q8BYP8 23 Q8BYP8 Q8BYP8 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230056F15 product:hypothetical Tyrosine-rich region containing protein, full insert sequence. (for rat)
Q61918 11 Q61918 Q61918 Pol protein (Fragment). (for rat lec)
Q63498 Q63498 Pot.ORF (Fragment). (for rat lec)
O70449 Putative retrovirus-related gag1 gene (matches rat - dta)
Q8BLS1 RIKEN sequence very similar to O70449, which is a retrovirus-like gene (matches rat - dta)
Q9CRM2 172 Q9CRM2_MOUSE Q9CRM2 Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720473M11 product:weakly similar to RETROVIRUS-RELATED GAG POLYPROTEIN (Fragment). from rat retroviral protein
Q6LCX0 1452 Q6LCX0_MOUSE Q6LCX0 Mus musculus clone CCD40 LINE-1 element ORF1 (Fragment).
Q8BR13 1583 Q8BR13_MOUSE Q8BR13 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230325I02 product:L1 repeat, Tf subfamily, member 29, full insert sequence. (Fragment).
Q8BHB5 7314 Q8BHB5_MOUSE Q8BHB5 Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430076C16 product:L1 repeat, Tf subfamily, member 30, full insert sequence (Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430081H21 product:SIMILAR TO L1 REPEAT, TF SUBFAMILY, MEMBER 30 homolog).
Q61785 103 Q61785_MOUSE Q61785 ORF2; 5' end undetermined. (Fragment).
Q8R1U0 121 Q8R1U0_MOUSE Q8R1U0 Hypothetical protein.
Q8C4B3 140 Q8C4B3_MOUSE Q8C4B3 Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230070D10 product:hypothetical protein, full insert sequence.
Q7TQ37 189 Q7TQ37_MOUSE Q7TQ37 Pol protein.
NP_899122.1 332 gi|50233844|ref|NP_899122.1| hypothetical protein LOC280487 [Mus musculus]
Q7TQ38 439 Q7TQ38_MOUSE Q7TQ38 Gag protein.
Q8CDH6 491 Q8CDH6_MOUSE Q8CDH6 Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932416G22 product:hypothetical protein, full insert sequence.
Q9Z155 506 Q9Z155_MOUSE Q9Z155 Reverse transcriptase (Fragment).
NP_001005856.1 728 gi|54312064|ref|NP_001005856.1| reverse transcriptase [Mus musculus]
P11369 898 POL2_MOUSE P11369 Retrovirus-related Pol polyprotein LINE-1 (Long interspersed element- 1) (L1) [Contains: Reverse transcriptase (EC 2.7.7.49); Endonuclease].
O08906 1222 O08906_MOUSE O08906 Reverse transcriptase (Fragment).
O54849 1242 O54849_MOUSE O54849 Hypothetical protein.
O54850 1304 O54850_MOUSE O54850 Endonuclease/reverse transcriptase.
Q9QUJ6 1387 Q9QUJ6_MOUSE Q9QUJ6 Mus musculus DNA, L1 element insertion in intron 3 of Mitf gene.
Q9R225 1392 Q9R225_MOUSE Q9R225 Mus musculus L1 retrotransposon, Tf subfamily L1Md-Tf2, partial sequence. (Fragment).
O08905 1410 O08905_MOUSE O08905 RNP particle component (Fragment) 
P11367 12 POL3_MOUSE P11367 Retrovirus-related Pol polyprotein (Endonuclease) (Fragment).
Q7M6U5 12 Q7M6U5_MOUSE Q7M6U5 Pol protein (Fragment).
P10404 13 ENV1_MOUSE P10404 Retrovirus-related Env polyprotein [Contains: Coat protein GP70] (Fragment).
Q80SV2 14 Q80SV2_MOUSE Q80SV2 Truncated envelope polyprotein.
Q811J2 11 Q811J2_MOUSE Q811J2 Hypothetical protein (Fragment). like a gag pol protein (lec)
Q8C2B1 18 Q8C2B1_MOUSE Q8C2B1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full- length enriched library, clone:E430033N13 product:retrovirus-related pol polyprotein homolog.
Q7TQ39 23 Q7TQ39_MOUSE Q7TQ39 Gag protein.
Q8BMX1 24 Q8BMX1_MOUSE Q8BMX1 Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700079J08 product:GAG PROTEIN homolog (Fragment).
P10400 31 POL1_MOUSE P10400 Retrovirus-related Pol polyprotein [Contains: Reverse transcriptase (EC 172.16.17.32); Endonuclease] (Fragment).
Q66JW8 19 Q66JW8_MOUSE Q66JW8 Hypothetical protein.
). like a Gag protein
Q99K18 25 Q99K18_MOUSE Q99K18 BC005512 protein (Fragment). Pol protein
Q8BTS2 95 Q8BTS2_MOUSE Q8BTS2 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full- length enriched library, clone:E430029J22 product:ANTIGEN LEC-A homolog (Fragment). Gag protein
Q9D9F4 Translation of a L1-like RIKEN sequence (dta).
NP_082840.1 A seemingly innocent RIKEN sequence, but similar enough to L1 elements to cause 80-odd single exon gene predictions (dta).
Q9D2T0 Contains integrase and viral capsid homologies (dta).
Q80YX9 Homologous to integrase domain (dta).
Q8VDY3 Member of integrase C superfamily (dta).
NP_112232 Tiny protein that has been removed from RefSeq.  Formed the basis 51 human genes (dta).
Q91VY0 56 Q91VY0_MOUSE Q91VY0 Similar to L1 repeat, Tf subfamily, member 30. 
Q06666 T2_MOUSE Q06666 Octapeptide-repeat protein T2.
Q658T9 63 Q658T9_HUMAN Q658T9 Hypothetical protein DKFZp666K083. hits rmacaque that many times who knows how many on human
Q8NGN9 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NH14 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NH24 Seven transmembrane helix receptor. (smjs TO MANY X)
Q7Z5M5 TMC3 protein. (smjs TO MANY X)
Q8IXD9 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NH25 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NH15 Seven transmembrane helix receptor. (smjs TO MANY X)
Q8NGV8 Seven transmembrane helix receptor. (smjs TO MANY X)
Q6ZVX2 Similar to several ALUs (smjs)
Q8N9E1 Similar to several ALUs (smjs)
Q6Q3U3 Similar to several ALUs (smjs)
Q9UJZ4 similar to Line-1s (smjs)
Q6ZWA1 similar to Line-1s (smjs)
Q6RGF7 similar to Line-1s (smjs)
Q7KZ41 similar to Line-1s (smjs)
O97916 reverse transcriptase like (smjs)
O88912 Mus musculus domesticus L1 retrotransposon, Tf subfamily L1Md-Tf8, partial sequence (smjs)
Q12880 Retrotransposable L1 element LRE2 from chromosome 1q. (smjs)
P22444 Bone morphogenetic protein 3 (klh TOO MANY X)
P33672 Proteasome subunit beta type 3 (klh TOO MANY X)
Q9TS87 Transgelin (klh TOO MANY X)
Q28051 Amelogenin (klh TOO MANY X)
P41413 Proprotein convertase subtilisin/kexin type 5 precursor (jb16)
Q6WDI9 Recombination activating gene 1 (Fragment) (jb16)
Q9JLP4 Aryl-hydrocarbon interacting-protein like-1 (Fragment) (jb16)
Q8BN15 Activated spleen cDNA, RIKEN full-length enriched library, clone:F830048M02 product:hypothetical protein, full insert sequence. (Fragment). (jb16)
Q63290  7697    Q63290.1 Q63290_RAT R.norvegicus L1 retroposon, ORF2 mRNA. (Fragment).(jb16)
Q63774  1948    Q63774.1 Q63774_RAT Hypothetical protein.MULTIPLE pmatch. (jb16)
Q63776  2298    Q63776.1 Q63776_RAT Hypothetical protein.MULTIPLE pmatch. (jb16)
Q63777  2988    Q63777.1 Q63777_RAT Hypothetical protein.MULTIPLE pmatch. (jb16)
Q4JFW4  339 Q4JFW4_RAT Nucleic acid binding protein.LINE (jb16)
Q4JFV3  313 Q4JFV3_RAT Nucleic acid binding protein.LINE (jb16)
Q6QI73  211 SIMILARITY: Contains 1 reverse transcriptase domain.(jb16)
Q4JFW3  114 LINE-1 retrotransposons(jb16)
Q63854  91  Q63854_RAT     PRELIMINARY;   PRT;    49 AA(jb16)
Q4JFW1  48  LINE-1 retrotransposons(jb16)
Q63305  48  Contains 1 reverse transcriptase domain(jb16)
Q3T9P7  39 Hypothetical protein(jb16)
Q4JFW2  31 LINE-1 retrotransposons(jb16)
Q61870  27 Q61870_MOUSE MCF-related viral RNAs(jb16)
Q61533  27 Q61533_MOUSE MCF-related viral RNAs(jb16)
Q6TUF9  14 Q6TUF9_RAT Contains 2 reverse transcriptase domains(jb16)
Q6QI35  12 Q6QI35_RAT Contains 1 reverse transcriptase domain(jb16)
Q91YB4  50 Transposase_22(jb16)
Q6TUG5  69 Transposase_22(jb16)
Q6TUH6  95 Transposase_22(jb16)
NP_034375  Friend virus susceptibility 4 [Mus musculus]  (jhv) 
Q6NXV5 Q6NXV5_MOUSE Similar to Retrovirus-related POL polyprotein (Endonuclease).  (jhv) 
P70355 P70355_MOUSE Gag-Pol polyprotein.  (jhv) 
Q6YIY0 Q6YIY0_MOUSE Gag protein.  (jhv) 
Q7M6W5 Q7M6W5_MOUSE Gag protein.  (jhv) 
Q61540 Q61540_MOUSE Gag protein.  (jhv) 
Q61977 Q61977_MOUSE M.musculus endogenous provirus env (Fragment).  (jhv) 
Q61975 Q61975_MOUSE M.musculus endogenous provirus env (Fragment).  (jhv) 
Q9ERJ2 Q9ERJ2_MOUSE Gag protein (Fragment).  (jhv) 
Q9D8A9 Q9D8A9_MOUSE simiilar to LINE PROTEIN.  (jhv) 
Q7M6U4 Q7M6U4_MOUSE Gag protein.  (jhv) 
Q9ERJ4 Q9ERJ4_MOUSE Gag protein   (jhv) 
Q3UGR7 Q3UGR7_MOUSE Melanocyte cDNA, RIKEN full-length enriched library, clone:G270040B10 product:hypothetical Retrovirus capsid, N-terminal core containing protein, full insert sequence. (Fragment).  (jhv) 
Q61927 Q61927_MOUSE Gag-myb protein (Fragment).  (jhv) 
Q9ERJ0 Q9ERJ0_MOUSE Gag protein (Fragment).  (jhv) 
Q04365 Q04365_MOUSE L1Md-9 repetitive sequence.  (jhv) 
Q3UXZ8 Q3UXZ8_MOUSE GAG protein   (jhv) 
Q61213 Q61213_MOUSE Gag.  (jhv) 
Q61708 Q61708_MOUSE Gag protein.  (jhv) 
Q3UW54 Q3UW54_MOUSE L1 repeat homolog.  (jhv) 
Q61709 Q61709_MOUSE DNA for type IIB intracisternal A-particle element encoding integrase and gag.  (jhv) 
Q3U565 Q3U565_MOUSE hypothetical Retroviral integrase, C-terminal/Integrase, catalytic domain containing protein, full insert sequence. (Fragment).  (jhv) 
Q60732 Q60732_MOUSE Mus musculus clone NCD40 LINE-1 element ORF1 (Fragment).  (jhv) 
Q60723 Q60723_MOUSE Mus musculus clone NCD33 LINE-1 element ORF1 (Fragment).  (jhv) 
Q60725 Q60725_MOUSE Mus musculus clone NCD39 LINE-1 element ORF1 (Fragment).  (jhv) 
Q61784 Q61784_MOUSE L1Md-A13 repetitive sequence.  (jhv) 
Q60727 Q60727_MOUSE Mus musculus clone NCD46 LINE-1 element ORF1 (Fragment).  (jhv) 
NP_035003 baculoviral IAP repeat-containing 1c [Mus musculus]  (jhv) 
Q60728 Q60728_MOUSE Mus musculus clone NCD47 LINE-1 element ORF1 (Fragment).  (jhv) 
NP_001014998.1 L1 transposable element jhv
Q3UPG4 1755 Q3UPG4.1 Q3UPG4_MOUSE L1 transposable element containing protein jhv
Q3U193 520 Q3U193.1 Q3U193_MOUSE Activated spleen  jhv
Q3UT63 176 Q3UT63.1 Q3UT63_MOUSE similar to GAG Q7R6V2_PLAYO jhv
Q61705 161 Q61705.1 Q61705_MOUSE similar probable Pol polyprotein reverse transcriptase jhv
NP_035003.2 1024 gi|66348093|ref|NP_035003.2| baculoviral IAP repeat-containing 1c  jhv
Q3UNK8 27 Q3UNK8.1 Q3UNK8_MOUSE retroviral-type family profile/F- MuLV receptor-binding/Peptidase aspartic
Q3TZR4 41 Q3TZR4.1 Q3TZR4_MOUSE product:hypothetical L1 transposable element containing protein
Q7LZ40.1 Q7LZ40_ORYLA Hyosophorin (Fragment).	(ba1)
Q15462 Cell surface glycoprotein (Fragment) (vac TOO MANY X)
Q8NH34 Seven transmembrane helix receptor. (vac TOO MANY X)
Q3LAZ2 MHC class I antigen (Fragment). (vac TOO MANY X)
NP_001018022.1 hypothetical protein LOC389286 [Homo sapiens] (vac multiple pmatch hits)
Q14547 Homeobox-like sequence. Part of tandem repeat (Fragment). (vac multiple pmatch hits)
Q3KP43 Hypothetical protein (vac multiple pmatch hits)
Q5T7B9 Chromosome 6 open reading frame 88 (Fragment). (vac multiple pmatch hits)
P49646.1 Very very hypothetical protein RMSA-1 (vac contains Alu elements)
P39188 Alu subfamily J sequence contamination warning entry. (vac)
P39189 Alu subfamily SB sequence contamination warning entry. (vac)
P39190 Alu subfamily SB1 sequence contamination warning entry. (vac)
P39191 Alu subfamily SB2 sequence contamination warning entry. (vac)
P39192 Alu subfamily SC sequence contamination warning entry. (vac)
P39193  Alu subfamily SP sequence contamination warning entry (vac)
P39194 Alu subfamily SQ sequence contamination warning entry. (vac)
P39195 Alu subfamily SX sequence contamination warning entry. (vac)
Q6XYC1 Q6XYC1_HUMAN LP3428 (vac multiple pmatch hits)
Q96PI4 HERV-K_1q23.3 provirus ancestral Gag polyprotein (vac)
P63123 HERV-K_1q23.3 provirus ancestral Pro protein (vac)
O42043 HERV-K_1q23.3 provirus ancestral Env polyprotein (vac)
O14749 	pol derived Reverse transcriptase [Fragment] (vac)
O14750 pol derived Reverse transcriptase [Fragment] (vac)
O14751 pol derived Reverse transcriptase [Fragment] (vac)
O14752 pol derived Reverse transcriptase [Fragment] (vac)
Q14272 Endogenous retroviral gene (HLM-2). [Fragment] (vac)
Q1W5W7 Putative gag-pol protein (vac)
Q330L6 Reverse transcriptase [Fragment] (vac)
Q330L7 Reverse transcriptase [Fragment] (vac)
Q330L8 Reverse transcriptase [Fragment] (vac)
Q3UWB7 Gag protein homolog [Fragment] (vac)
Q4JNY2 Pol [Fragment] (vac)
Q330L9 Reverse transcriptase [Fragment] (vac)
Q4JNY4 Gag [Fragment] (vac)
Q330M0 	Reverse transcriptase [Fragment] (vac)
Q60505 Chinese hamster provirus (vac)
Q330M1 Reverse transcriptase [Fragment] (vac)
Q04099 Pol protein [Fragment]  (vac)
Q330M2 Reverse transcriptase [Fragment] (vac)
Q330M3 	Reverse transcriptase [Fragment] (vac)
Q7M6W3 	Pol protein [Fragment] (vac)
Q6ZMV2 CDNA FLJ16646 fis, clone TESTI4032090 (vac)
Q6ZN85 CDNA FLJ16337 fis, clone TESTI1000266 (vac)
Q6ZQX8 	CDNA FLJ46816 fis, clone TRACH3036932 (vac)
Q71VD1 	Reverse transcriptase [Fragment] (vac)
Q78E13 RNA for type IIB intracisternal A-particle (IAP) element encoding integrase, clone 111. [Fragment] (vac)
Q7M6W6 Gag protein (vac)
Q866Y8 Rabbit gag (fragment) (vac)
Q8BV19 Mouse Riken, hypothetical gag protein (vac)
Q8MJF4 Rabbit pol fragment (vac)
Q8MJF6 Rabbit gag homologue (vac)
Q8MJF7 Rabbit pol fragment (vac)
Q8NB65 predicted from human cDNA, retroviral gag homologue (vac)
Q8NFP1 Human pol fragment (vac)
Q8NFP3 Human gag protein (vac)
Q99J11 BC005685 protein [Fragment] - Mouse gag (vac)
Q9ERJ1 Mouse gag fragment (vac)
Q9GLF8 Possum pol fragment (vac)
Q9N172 Possum pol fragment (vac)
Q9N174 Possum gag polyprotein (vac)
Q9N1R8 Sheep pol (vac)
Q9N1S0 Sheep gag (vac)
Q9QW50 Deer mouse reverse transcriptase fragment (vac)
Q9TTD5 Sheep gag (vac)
Q9TUZ2 Sheep reverse transcriptase fragment (vac)
Q9TUZ4 Sheep reverse transcriptase fragment (vac)
Q9TUZ6 Sheep reverse transcriptase fragment (vac)
Q9XT38 Sheep reverse transcriptase fragment (vac)
Q9XT40 Sheep reverse transcriptase fragment (vac)
P10266 POK10_HUMAN Human HERV-K_5q33.3 provirus ancestral Pol protein I(vac)
P10399 POL1_CHICK Chicken 	Retrovirus-related Pol polyprotein [Fragments] (vac)
P62683 GAK1_HUMAN Human HERV-K_12q14.1 provirus ancestral Gag polyprotein (vac)
P62684 GAK5_HUMAN Human HERV-K_19p13.11 provirus ancestral Gag polyprotein (vac)
P62685 GAK6_HUMAN Human HERV-K_8p23.1 provirus ancestral Gag polyprotein (vac)
P62686 GAK13_HUMAN Human HERV-K_1p13.3 provirus ancestral Gag polyprotein (vac)
P62687 GAK14_HUMAN Human HERV-K_16p3.3 provirus ancestral Gag polyprotein (vac)
P62688 GAK15_HUMAN Human HERV-K_3q21.2 provirus ancestral Gag polyprotein (vac)
P62689 GAK17_HUMAN HERV-K_11q22.1 provirus ancestral Gag polyprotein (vac)
P62690 GAK18_HUMAN HERV-K_22q11.23 provirus ancestral Gag polyprotein (vac)
P62691 GAK19_HUMAN HERV-K_4p16.1 provirus ancestral Gag polyprotein (vac)
P63126 GAK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag polyprotein (vac)
P63128 POK4_HUMAN HERV-K_6q14.1 provirus ancestral Pol protein (vac)
P63130 GAK12_HUMAN HERV-K_1q22 provirus ancestral Gag polyprotein (vac)
P63132 POK5_HUMAN HERV-K_19p13.11 provirus ancestral Pol protein (vac)
P63133 POK6_HUMAN HERV-K_8p23.1 provirus ancestral Pol protein (vac)
P63134 POK9_HUMAN HERV-K_5q13.3 provirus ancestral Pol protein (vac)
P63136 POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein (vac)
P63145 GAK11_HUMAN HERV-K_22q11.21 provirus ancestral Gag polyprotein (vac)
P87889 GAK10_HUMAN HERV-K_5q33.3 provirus ancestral Gag polyprotein (vac)
P87893 POK11_HUMAN HERV-K_22q11.21 provirus ancestral Pol protein (vac)
Q7LDI9 GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag polyprotein (vac)
Q9BXR3 POK2_HUMAN HERV-K_7p22.1 provirus ancestral Pol protein (vac)
Q9HDB9 GAK8_HUMAN HERV-K_3q12.3 provirus ancestral Gag polyprotein (vac)
Q9QC07 POK7_HUMAN HERV-K_1q23.3 provirus ancestral Pol protein (vac)
Q9UKH8 GAK9_HUMAN HERV-K_5q13.3 provirus ancestral Gag polyprotein (vac)
Q9UQG0 POK20_HUMAN HERV-K_3q27.3 provirus ancestral Pol protein (vac)
Q9WJR5 POK3_HUMAN HERV-K_19q12 provirus ancestral Pol protein (vac)
Q9YNA8 GAK3_HUMAN HERV-K_19q12 provirus ancestral Gag polyprotein (vac)
O14749 O14749_HUMAN Reverse transcriptase (Fragment). (vac)
O14750 O14750_HUMAN Reverse transcriptase (Fragment). (vac)
O14751 O14751_HUMAN Reverse transcriptase (Fragment). (vac)
O14752 O14752_HUMAN Reverse transcriptase (Fragment). (vac)
O15309 O15309_HUMAN Polymerase (Fragment). (vac)
O15310 O15310_HUMAN Polymerase (Fragment). (vac)
O15311 O15311_HUMAN Polymerase (Fragment). (vac)
O15313 O15313_HUMAN Polymerase (Fragment). (vac)
O15314 O15314_HUMAN Polymerase (Fragment). (vac)
O95281 O95281_HUMAN Envelope protein RIC-3. (vac)
O95282 O95282_HUMAN Envelope protein RIC-4. (vac)
O95283 O95283_HUMAN Envelope protein RIC-5. (vac)
O95284 O95284_HUMAN Envelope protein RIC-6. (vac)
Q04099 Q04099_CHICK Pol protein (Fragment). (vac)
Q14272 Q14272_HUMAN Endogenous retroviral gene (HLM-2). (Fragment). (vac)
Q1W5W7 Q1W5W7_MOUSE Putative gag-pol protein. (vac)
Q330L6 Q330L6_FALPE Reverse transcriptase (Fragment). (vac)
Q330L7 Q330L7_FALPE Reverse transcriptase (Fragment). (vac)
Q330L8 Q330L8_FALPE Reverse transcriptase (Fragment). (vac)
Q330L9 Q330L9_9GALL Reverse transcriptase (Fragment). (vac)
Q330M0 Q330M0_COLVI Reverse transcriptase (Fragment). (vac)
Q330M2 Q330M2_LAGLU Reverse transcriptase (Fragment). (vac)
Q330M3 Q330M3_LAGLU Reverse transcriptase (Fragment). (vac)
Q3U565 Q3U565_MOUSE 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430001B05 product:hypothetical Retroviral integrase, C-terminal/Integrase, catalytic domain containing protein, full insert sequence. (Fragment). (vac)
Q4JM57 Q4JM57_HUMAN Envelope protein (Fragment). (vac)
Q4JM60 Q4JM60_HUMAN Envelope protein (Fragment). (vac)
Q4JM62 Q4JM62_HUMAN Envelope protein (Fragment). (vac)
Q330M1 Q330M1_9GALL Reverse transcriptase (Fragment). (vac)
Q4JM63 Q4JM63_HUMAN Envelope protein (Fragment). (vac)
Q4JM64 Q4JM64_HUMAN Envelope protein (Fragment). (vac)
Q4JNY0 Q4JNY0_HUMAN Env type 1 (Fragment). (vac)
Q4JNY1 Q4JNY1_HUMAN Env type 2 (Fragment). (vac)
Q4JNY2 Q4JNY2_HUMAN Pol (Fragment). (vac)
Q61705 Q61705_MOUSE Integrase (376 AA) (Fragment). (vac)
Q61706 Q61706_MOUSE RNA for type IIB intracisternal A-particle (IAP) element encoding integrase, clone 106. (vac)
Q61709 Q61709_MOUSE DNA for type IIB intracisternal A-particle element encoding integrase and gag. (vac)
Q71VD1 Q71VD1_HUMAN Reverse transcriptase (Fragment). (vac)
Q78E13 Q78E13_MOUSE RNA for type IIB intracisternal A-particle (IAP) element encoding integrase, clone 111. (Fragment). (vac)
Q7M6U5 Q7M6U5_MOUSE Pol protein (Fragment.) (vac)
Q7M6W3 Q7M6W3_MOUSE Pol protein (Fragment). (vac)
Q7TQ37 Q7TQ37_MOUSE Pol protein. (vac)
Q8BIB0 Q8BIB0_MOUSE Adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430601O08 product:similar to Pol protein. (vac)
Q8C2B1 Q8C2B1_MOUSE 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430033N13 product:Retrovirus-related pol polyprotein homolog, full insert sequence. (vac)
Q8MJF4 Q8MJF4_RABIT Pol protein (Fragment). (vac)
Q8MJF7 Q8MJF7_RABIT Pol protein (Fragment). (vac)
Q8NFP1 Q8NFP1_HUMAN Pol protein (Fragment). (vac)
Q9GLF8 Q9GLF8_TRIVU Pol protein (Fragment). (vac)
Q9GMP3 Q9GMP3_MACFA Hypothetical protein. (vac)
Q9N172 Q9N172_TRIVU Pol polyprotein (Fragment). (vac)
Q9N1R8 Q9N1R8_SHEEP Pol. (vac)
Q9QW50 Q9QW50_PERMA Reverse transcriptase homolog (Partial) (Fragment). (vac)
Q9TUZ2 Q9TUZ2_SHEEP Reverse transcriptase (Fragment). (vac)
Q9TUZ4 Q9TUZ4_SHEEP Reverse transcriptase (Fragment). (vac)
Q9TUZ6 Q9TUZ6_SHEEP Reverse transcriptase (Fragment). (vac)
Q9UNW2 Q9UNW2_HUMAN Envelope protein RIC-7. (vac)
Q9UNW3 Q9UNW3_HUMAN Envelope protein RIC-2. (vac)
Q9XT38 Q9XT38_SHEEP Reverse transcriptase (Fragment). (vac)
Q9XT40 Q9XT40_SHEEP Reverse transcriptase (Fragment). (vac)
O42043.2 ENK7_HUMAN HERV-K_1q23.3 provirus ancestral Env polyprotein (vac)
O71037.2 ENK3_HUMAN HERV-K_19q12 provirus ancestral Env polyprotein precursor (vac)
P10266.2 POK10_HUMAN HERV-K_5q33.3 provirus ancestral Pol protein (vac)
P10267.2 ENK10_HUMAN HERV-K_5q33.3 provirus ancestral Env polyprotein (vac)
P10399.1 POL1_CHICK Retrovirus-related Pol polyprotein (vac)
P61565.1 ENK1_HUMAN HERV-K_12q14.1 provirus ancestral Env polyprotein precursor (vac)
P61566.1 ENK11_HUMAN HERV-K_22q11.21 provirus ancestral Env polyprotein (vac)
P61567.1 ENK12_HUMAN HERV-K_1q22 provirus ancestral Env polyprotein (vac)
P61568.1 ENK13_HUMAN HERV-K_1p13.3 provirus ancestral Env polyprotein (vac)
P61569.1 ENK16_HUMAN HERV-K_10p14 provirus ancestral Env polyprotein precursor (vac)
P61570.1 ENK17_HUMAN HERV-K_11q22.1 provirus ancestral Env polyprotein precursor (vac)
P61571.1 REC1_HUMAN HERV-K_12q14.1 provirus Rec protein. (vac)
P61572.1 REC3_HUMAN HERV-K_19q12 provirus Rec protein (HERV-K(C19) Rec protein). (vac)
P61573.1 REC4_HUMAN HERV-K_6q14.1 provirus Rec protein (HERV-K109 Rec protein) (vac)
P61574.1 REC5_HUMAN HERV-K_19p13.11 provirus Rec protein (HERV-K113 Rec protein).(vac)
P61575.1 REC6_HUMAN HERV-K_8p23.1 provirus Rec protein (HERV-K115 Rec protein).(vac)
P61576.1 REC9_HUMAN HERV-K_5q13.3 provirus Rec protein (HERV-K104 Rec protein).(vac)
P61577.1 REC15_HUMAN HERV-K_3q21.2 provirus Rec protein (HERV-K(I) Np9 protein).(vac)
P61578.1 REC16_HUMAN HERV-K_10p14 provirus Rec protein.(vac)
P61579.1 REC17_HUMAN HERV-K_11q22.1 provirus Rec protein.(vac)
P63128.1 POK4_HUMAN HERV-K_6q14.1 provirus ancestral Pol protein (vac)
P63132.1 POK5_HUMAN HERV-K_19p13.11 provirus ancestral Pol protein  (vac)
P63133.1 POK6_HUMAN HERV-K_8p23.1 provirus ancestral Pol protein (vac)
P63134.1 POK9_HUMAN HERV-K_5q13.3 provirus ancestral Pol protein (vac)
P63135.1 POK12_HUMAN HERV-K_1q22 provirus ancestral Pol protein (vac)
P63136.1 POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein (vac)
P87893.2 POK11_HUMAN HERV-K_22q11.21 provirus ancestral Pol protein (vac)
Q69383.1 REC2_HUMAN HERV-K_7q22.1 provirus Rec protein (vac)
Q69384.1 ENK2_HUMAN HERV-K_7p22.1 provirus ancestral Env polyprotein precursor (vac)
Q6ZVY0.2 ENK19_HUMAN HERV-K_4p16.1 provirus ancestral Env polyprotein precursor (vac)
Q902F8.1 ENK6_HUMAN HERV-K_8p23.1 provirus ancestral Env polyprotein precursor (vac)
Q902F9.1 ENK5_HUMAN HERV-K_19p13.11 provirus ancestral Env polyprotein precursor (vac)
Q9BXR3.2 POK2_HUMAN HERV-K_7p22.1 provirus ancestral Pol protein (vac)
Q9HDB8.1 ENK8_HUMAN HERV-K_3q12.3 provirus ancestral Env polyprotein (vac)
Q9HDC0.1 ENK15_HUMAN HERV-K_3q21.2 provirus ancestral Env polyprotein (vac)
Q9NX77.2 ENK14_HUMAN HERV-K_16p3.3 provirus ancestral Env polyprotein (vac)
Q9QC07.2 POK7_HUMAN HERV-K_1q23.3 provirus ancestral Pol protein (vac)
Q9UKH3.1 ENK4_HUMAN HERV-K_6q14.1 provirus ancestral Env polyprotein precursor (vac)
Q9UKH7.1 ENK9_HUMAN HERV-K_5q13.3 provirus ancestral Env polyprotein precursor (vac)
Q9UQG0.2 POK20_HUMAN HERV-K_3q27.3 provirus ancestral Pol protein (vac)
Q9WJR5.2 POK3_HUMAN HERV-K_19q12 provirus ancestral Pol protein (vac)





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