<commit_before># These settings are all the required settings for the pyPaSWAS software 
# This file is read by default and should be overridden by using command-line
# arguments and / or a configuration file specified with '--configfile' 
[General]
out_file=output
out_format=TXT
loglevel=WARNING
program=aligner
filetype1=fasta
filetype2=fasta
override_output=T

[Aligner]
gap_score=-5
match_score=5
mismatch_score=-3
other_score=-1
any_score=0
matrix_name=DNA-RNA
highest_score=5
lower_limit_score=1.0
minimum_score=30
[Filter]
filter_factor=0.2
query_coverage=0.2
query_identity=0.2
relative_score=2.0
base_score=2.0

[Mapper]
maximum_distance=0.02
qgram=4
compressed_index=T

[Device]
device_number=0
maximum_memory_usage=0.8
limit_length=10000
max_genome_length=200000
recompile=T
sequence_step=100000000
query_step=1000000
short_sequences=F

[Framework]
language=OpenCL

[OpenCL]
device_type=CPU
platform_name=Intel
<commit_msg>0.06 is a nice default setting<commit_after># These settings are all the required settings for the pyPaSWAS software 
# This file is read by default and should be overridden by using command-line
# arguments and / or a configuration file specified with '--configfile' 
[General]
out_file=output
out_format=TXT
loglevel=WARNING
program=aligner
filetype1=fasta
filetype2=fasta
override_output=T

[Aligner]
gap_score=-5
match_score=5
mismatch_score=-3
other_score=-1
any_score=0
matrix_name=DNA-RNA
highest_score=5
lower_limit_score=1.0
minimum_score=30
[Filter]
filter_factor=0.2
query_coverage=0.2
query_identity=0.2
relative_score=2.0
base_score=2.0

[Mapper]
maximum_distance=0.06
qgram=4
compressed_index=T

[Device]
device_number=0
maximum_memory_usage=0.8
limit_length=10000
max_genome_length=200000
recompile=T
sequence_step=100000000
query_step=1000000
short_sequences=F

[Framework]
language=OpenCL

[OpenCL]
device_type=CPU
platform_name=Intel

{'fraction_non_alphanumeric': 0.07790143084260731, 'fraction_numerical': 0.06094329623741388, 'mean_word_length': 7.947867298578199, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 2, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5500960', 'n_tokens_mistral': 747, 'n_tokens_neox': 677, 'n_words': 157}