<commit_before>snakemake
samtools
bwa
bcbio_monitor
py-graphviz
pysam
pybedtools
urllib3
sure
httplib2
xmltodict
httpretty
moto
tbb
grabix
toposort
varscan
mosaik
mafft
last
python-levenshtein
cutadapt
hubward
trackhub
bleach
argh
python-wget
subread
pyvcf
simple_sv_annotation
netifaces
ipython-cluster-helper
cyordereddict
bx-python
cyvcf2
bottle
geneimpacts
inheritance
gemini
mageck
vispr
java-jdk
appdirs
fastqc
mageck-vispr
cnvkit
sambamba
gatk-framework
snpeff
pythonpy
metasv
bedtools
htslib
fisher
gffutils
metaseq
pyfaidx
simplejson
metaseq-all
ucsc-bedgraphtobigwig
ucsc-bedtobigbed
ucsc-bigwigsummary
ucsc-bigbedtobed
ucsc-bigwigtobedgraph
mygene
ucsc-axttomaf
ucsc-fatotwobit
ucsc-genepredtomafframes
ucsc-gtftogenepred
ucsc-hgloadmaf
ucsc-mafaddirows
ucsc-mafaddqrows
ucsc-mafcoverage
ucsc-maffetch
ucsc-maffilter
ucsc-maffrag
ucsc-maffrags
ucsc-mafgene
ucsc-mafmefirst
ucsc-maforder
ucsc-mafranges
ucsc-mafsinregion
ucsc-mafspecieslist
ucsc-mafspeciessubset
ucsc-mafsplit
ucsc-mafsplitpos
ucsc-maftoaxt
ucsc-maftosnpbed
bcbio-prioritize
vardict
vardict-java
vcflib
freebayes
lumpy-sv
chanjo
picard
qualimap
cramtools
srprism
spades
bcbio-variation-recall
blast
bmtool
bmfilter
extract_fullseq
bmtagger
novoalign
chromhmm
bamtools<commit_msg>add vphaser2 to osx whitelist<commit_after>snakemake
samtools
bwa
bcbio_monitor
py-graphviz
pysam
pybedtools
urllib3
sure
httplib2
xmltodict
httpretty
moto
tbb
grabix
toposort
varscan
mosaik
mafft
last
python-levenshtein
cutadapt
hubward
trackhub
bleach
argh
python-wget
subread
pyvcf
simple_sv_annotation
netifaces
ipython-cluster-helper
cyordereddict
bx-python
cyvcf2
bottle
geneimpacts
inheritance
gemini
mageck
vispr
java-jdk
appdirs
fastqc
mageck-vispr
cnvkit
sambamba
gatk-framework
snpeff
pythonpy
metasv
bedtools
htslib
fisher
gffutils
metaseq
pyfaidx
simplejson
metaseq-all
ucsc-bedgraphtobigwig
ucsc-bedtobigbed
ucsc-bigwigsummary
ucsc-bigbedtobed
ucsc-bigwigtobedgraph
mygene
ucsc-axttomaf
ucsc-fatotwobit
ucsc-genepredtomafframes
ucsc-gtftogenepred
ucsc-hgloadmaf
ucsc-mafaddirows
ucsc-mafaddqrows
ucsc-mafcoverage
ucsc-maffetch
ucsc-maffilter
ucsc-maffrag
ucsc-maffrags
ucsc-mafgene
ucsc-mafmefirst
ucsc-maforder
ucsc-mafranges
ucsc-mafsinregion
ucsc-mafspecieslist
ucsc-mafspeciessubset
ucsc-mafsplit
ucsc-mafsplitpos
ucsc-maftoaxt
ucsc-maftosnpbed
bcbio-prioritize
vardict
vardict-java
vcflib
freebayes
lumpy-sv
chanjo
picard
qualimap
cramtools
srprism
spades
bcbio-variation-recall
blast
bmtool
bmfilter
extract_fullseq
bmtagger
vphaser2
novoalign
chromhmm
bamtools
{'fraction_non_alphanumeric': 0.03626330311391407, 'fraction_numerical': 0.0031533307055577452, 'mean_word_length': 7.240259740259741, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1601608', 'n_tokens_mistral': 1186, 'n_tokens_neox': 1156, 'n_words': 222}