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<a href="index.do?tab_index=tab_visualize&cancer_study_id=coadread_tcga&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=coadread_tcga_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=coadread_tcga_gistic&Z_SCORE_THRESHOLD=2.0&case_set_id=coadread_tcga_nonhypermut&case_ids=&gene_list=KRAS+NRAS+BRAF&gene_set_choice=user-defined-list&Action=Submit">RAS/RAF alterations in colorectal cancer</a>
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<a href="index.do?tab_index=tab_visualize&cancer_study_id=ov_tcga&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=ov_tcga_mutations&Z_SCORE_THRESHOLD=2.0&case_set_id=ov_tcga_3way_complete&case_ids=&gene_list=BRCA1+BRCA2&gene_set_choice=user-defined-list&Action=Submit#mutation_details">BRCA1 and BRCA2 mutations in ovarian cancer</a>
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<a href="index.do?tab_index=tab_visualize&cancer_study_id=ov_tcga&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=ov_tcga_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=ov_tcga_gistic&Z_SCORE_THRESHOLD=2.0&case_set_id=ov_tcga_3way_complete&case_ids=&gene_list=PTEN%3A+HOMDEL+MUT%3B&gene_set_choice=user-defined-list&Action=Submit#protein_exp">Protein changes in PTEN-altered ovarian cancer samples</a>
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<a href="index.do?case_set_id=gbm_tcga_sequenced&tab_index=tab_visualize&Action=Submit&genetic_profile_ids=gbm_tcga_mutations&genetic_profile_ids=gbm_tcga_cna_rae&case_ids=&Z_SCORE_THRESHOLD=1.0&cancer_study_id=gbm_tcga&gene_list=TP53+MDM2+MDM4&gene_set_choice=user-defined_list&">TP53 and MDM2/4 alterations in GBM</a>
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<a href="index.do?case_set_id=gbm_tcga_sequenced&tab_index=tab_download&Action=Submit&genetic_profile_ids=gbm_tcga_mutations&cancer_study_id=gbm_tcga&gene_list=PTEN&gene_set_choice=user-defined_list&transpose_matrix=on">PTEN mutations in GBM in text format</a>
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<a href="cross_cancer.do?tab_index=tab_visualize&clinical_param_selection=null&cancer_study_id=all&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=gbm_tcga_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=gbm_tcga_gistic&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=1.0&case_set_id=gbm_tcga_cnaseq&case_ids=&gene_list=BRAF%3AMUT%3DV600E&gene_set_choice=user-defined-list&Action=Submit">BRAF V600E mutations across cancer types</a>
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<a href="tumormap.do?case_id=TCGA-BK-A0CC&cancer_study_id=ucec_tcga">Patient view of an endometrial cancer case</a>
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<commit_msg>fix to TP53 MDM2/4 alterations example link<commit_after><p>
<a href="index.do?tab_index=tab_visualize&cancer_study_id=coadread_tcga&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=coadread_tcga_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=coadread_tcga_gistic&Z_SCORE_THRESHOLD=2.0&case_set_id=coadread_tcga_nonhypermut&case_ids=&gene_list=KRAS+NRAS+BRAF&gene_set_choice=user-defined-list&Action=Submit">RAS/RAF alterations in colorectal cancer</a>
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<a href="index.do?tab_index=tab_visualize&cancer_study_id=ov_tcga&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=ov_tcga_mutations&Z_SCORE_THRESHOLD=2.0&case_set_id=ov_tcga_3way_complete&case_ids=&gene_list=BRCA1+BRCA2&gene_set_choice=user-defined-list&Action=Submit#mutation_details">BRCA1 and BRCA2 mutations in ovarian cancer</a>
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<a href="index.do?tab_index=tab_visualize&cancer_study_id=ov_tcga&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=ov_tcga_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=ov_tcga_gistic&Z_SCORE_THRESHOLD=2.0&case_set_id=ov_tcga_3way_complete&case_ids=&gene_list=PTEN%3A+HOMDEL+MUT%3B&gene_set_choice=user-defined-list&Action=Submit#protein_exp">Protein changes in PTEN-altered ovarian cancer samples</a>
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<a href="index.do?genetic_profile_ids_PROFILE_MUTATION_EXTENDED=gbm_tcga_mutations&Z_SCORE_THRESHOLD=2.0&gene_list=TP53+MDM2+MDM4&tab_index=tab_visualize&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=gbm_tcga_gistic&Action=Submit&data_priority=0&case_set_id=gbm_tcga_cnaseq&cancer_study_id=gbm_tcga&RPPA_SCORE_THRESHOLD=2.0&gene_set_choice=user-defined-list&">TP53 and MDM2/4 alterations in GBM</a>
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<a href="index.do?case_set_id=gbm_tcga_sequenced&tab_index=tab_download&Action=Submit&genetic_profile_ids=gbm_tcga_mutations&cancer_study_id=gbm_tcga&gene_list=PTEN&gene_set_choice=user-defined_list&transpose_matrix=on">PTEN mutations in GBM in text format</a>
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<a href="cross_cancer.do?tab_index=tab_visualize&clinical_param_selection=null&cancer_study_id=all&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=gbm_tcga_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=gbm_tcga_gistic&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=1.0&case_set_id=gbm_tcga_cnaseq&case_ids=&gene_list=BRAF%3AMUT%3DV600E&gene_set_choice=user-defined-list&Action=Submit">BRAF V600E mutations across cancer types</a>
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<a href="tumormap.do?case_id=TCGA-BK-A0CC&cancer_study_id=ucec_tcga">Patient view of an endometrial cancer case</a>
</p>


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