<commit_before>{% set name = "sequana" %}
{% set version = "0.6.3.post1" %}
{% set md5 = "e57e47618212068cbebdc527e8210a9a" %}

package:
  name: {{ name }}
  version: {{ version }}

source:
  fn: {{ name }}-{{ version }}.tar.gz
  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
  md5: {{ md5 }}


build:
  skip: True # [py27]
  preserve_egg_dir: True
  number: 0
  entry_points:
    - sequana_gui=sequana.gui.sequana_gui:main
    - sequanix=sequana.gui.sequana_gui:main
    - fastq_head=sequana.scripts.fastq_head:main
    - fastq_count=sequana.scripts.fastq_count:main
    - sequana_fastq_head=sequana.scripts.fastq_head:main
    - sequana_fastq_count=sequana.scripts.fastq_count:main
    - sequana=sequana.scripts.main:main
    - sequana_taxonomy=sequana.scripts.taxonomy:main
    - sequana_coverage=sequana.scripts.coverage:main
    - sequana_summary=sequana.scripts.summary:main
    - sequana_mapping=sequana.scripts.mapping:main
    - sequana_compressor=sequana.scripts.compressor:main
    - sequana_report=sequana.scripts.reports:main


requirements:
  build:
    - python
    - setuptools

  run:
    - python
    - atropos ==1.1.16
    - bcftools
    - bedtools
    - bioservices >=1.4.14
    - biokit >=0.4.1
    - bleach
    - bowtie
    - bowtie2
    #- busco ==3.0.2
    - bwa
    # - canu
    - colorlog
    - cutadapt
    - easydev >=0.9.36
    - fastq-screen
    - fastqc ==0.11.5
    - freebayes
    - graphviz
    - khmer
    - kraken # [not osx]
    - krona
    - mock
    - multiqc ==1.0
    - numexpr
    - pandas
    - pigz
    #- prokka
    - psutil
    - pyyaml
    - pyvcf
    - pysam
    - ruamel.yaml >=0.13.2,<=0.15.0
    - qtconsole
    - reports >=0.3.1
    - sambamba
    - samtools
    - snakemake ==4.0.0
    - snpeff
    - spades
    - shustring
    - subread
    - xlrd

#<commit_msg>update version to 0.7.0 (#8202)<commit_after>{% set name = "sequana" %}
{% set version = "0.7.0" %}
{% set md5 = "19d32438cf30584c68f834f10d6eac5c" %}

package:
  name: {{ name }}
  version: {{ version }}

source:
  fn: {{ name }}-{{ version }}.tar.gz
  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
  md5: {{ md5 }}


build:
  skip: True # [py27]
  preserve_egg_dir: True
  number: 0
  entry_points:
    - sequana_gui=sequana.gui.sequana_gui:main
    - sequanix=sequana.gui.sequana_gui:main
    - fastq_head=sequana.scripts.fastq_head:main
    - fastq_count=sequana.scripts.fastq_count:main
    - sequana_fastq_head=sequana.scripts.fastq_head:main
    - sequana_fastq_count=sequana.scripts.fastq_count:main
    - sequana=sequana.scripts.main:main
    - sequana_taxonomy=sequana.scripts.taxonomy:main
    - sequana_coverage=sequana.scripts.coverage:main
    - sequana_summary=sequana.scripts.summary:main
    - sequana_mapping=sequana.scripts.mapping:main
    - sequana_compressor=sequana.scripts.compressor:main
    - sequana_report=sequana.scripts.reports:main


requirements:
  build:
    - python
    - setuptools

  run:
    - python
    - atropos ==1.1.16
    - bcftools
    - bedtools
    - bioservices >=1.4.14
    - biokit >=0.4.1
    - bleach
    - bowtie
    - bowtie2
    #- busco ==3.0.2
    - bwa
    # - canu
    - colorlog
    - cutadapt
    - easydev >=0.9.36
    - fastq-screen
    - fastqc ==0.11.5
    - freebayes
    - graphviz
    - khmer
    - kraken # [not osx]
    - krona
    - mock
    - multiqc ==1.0
    - numexpr
    - pandas
    - pigz
    #- prokka
    - psutil
    - pyyaml
    - pyvcf
    - pysam
    - ruamel.yaml ==0.12.13
    - qtconsole
    - reports >=0.3.1
    - sambamba
    - samtools
    - snakemake ==4.0.0
    - snpeff
    - spades
    - shustring
    - subread
    - xlrd

#
{'fraction_non_alphanumeric': 0.13960342979635584, 'fraction_numerical': 0.03885316184351554, 'mean_word_length': 2.2236614853195165, 'pattern_counts': {'":': 0, '<': 4, '<?xml version=': 0, '>': 12, 'https://': 2, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7026380', 'n_tokens_mistral': 1576, 'n_tokens_neox': 1494, 'n_words': 226}