<commit_before>{
    "ci": {
        "publicData": {
            "genomes": {
                "name": "Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "KBasePublicGenomesV5",
                "search": true
            },
            "refseq_genomes": {
                "name": "RefSeq Genomes",
                "type": "KBaseGenomeAnnotations.GenomeAnnotation",
                "ws": "RefSeq_Genomes",
                "search": true
            },
            "phytozome_genomes": {
                "name": "Phytozome Genomes",
                "type": "KBaseGenomeAnnotations.GenomeAnnotation",
                "ws": "Phytozome_Genomes",
                "search": true
            },
            "ensembl_genomes": {
                "name": "Ensembl Genomes",
                "type": "KBaseGenomeAnnotations.GenomeAnnotation",
                "ws": "ReferenceEnsemblPlantGenomeAnnotations",
                "search": true
            },
            "media": {
                "name": "Media",
                "type": "KBaseBiochem.Media",
                "ws": "KBaseMedia",
                "search": false
            },
            "plant_gnms": {
                "name": "Plant Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "se_reads": {
                "name": "RNA-seq Reads (single-end)",
                "type": "KBaseAssembly.SingleEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "pe_reads": {
                "name": "RNA-seq Reads (paired-end)",
                "type": "KBaseAssembly.PairedEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_rnaseq_anno": {
                "name": "Plant RNA-seq Annotations",
                "type": "KBaseRNASeq.ReferenceAnnotation",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_bowtie2_idx": {
                "name": "Plant Bowtie2 Indexes",
                "type": "KBaseRNASeq.Bowtie2Indexes",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "ontology": {
                "name": "Public ontologies",
                "type": "KBaseOntology.OntologyDictionary",
                "ws": "KBaseOntology",
                "search": false
            },
            "ontology_translation": {
                "name": "Ontology translations",
                "type": "KBaseOntology.OntologyTranslation",
                "ws": "KBaseOntology",
                "search": false
            }
        },
        "exampleData": {
            "ws": "KBaseExampleData",
            "data_types": [
                {
                    "name": [
                        "SingleEndLibrary",
                        "PairedEndLibrary",
                        "ReferenceAssembly"
                    ],
                    "displayName": "Example Sequence Assembly Inputs",
                    "header": "Various types of read data configured for sequence assembly."
                },
                {
                    "name": [
                        "ContigSet"
                    ],
                    "displayName": "Example Contig Sets",
                    "header": "A set of DNA sequences"
                },
                {
                    "name": [
                        "Genome"
                    ],
                    "displayName": "Example Genomes",
                    "header": "Genomic sequence generally with attached functional annotations"
                },
                {
                    "name": [
                        "FBAModel"
                    ],
                    "displayName": "Example FBAModels",
                    "header": "A metabolic model of an organism"
                },
                {
                    "name": [
                        "Media"
                    ],
                    "displayName": "Example Media",
                    "header": "Specification of an environmental condition"
                },
                {
                    "name": [
                        "ExpressionMatrix"
                    ],
                    "displayName": "Example ExpressionMatrix",
                    "header": "Gene expression data in a gene vs. condition matrix"
                },
                {
                    "name": [
                        "TranscriptomeHack"
                    ],
                    "displayName": "Example Sorghum Transcriptomes",
                    "header": "Sorghum bicolor transcriptome data in response to ABA and osmotic stress"
                }
            ]
        }
    },
    "next": {
        "publicData": {
            "genomes": {
                "name": "Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "KBasePublicGenomesV5",
                "search": true
            },
            "media": {
                "name": "Media",
                "type": "KBaseBiochem.Media",
                "ws": "KBaseMedia",
                "search": false
            },
            "plant_gnms": {
                "name": "Plant Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "se_reads": {
                "name": "RNA-seq Reads (single-end)",
                "type": "KBaseAssembly.SingleEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "pe_reads": {
                "name": "RNA-seq Reads (paired-end)",
                "type": "KBaseAssembly.PairedEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_rnaseq_anno": {
                "name": "Plant RNA-seq Annotations",
                "type": "KBaseRNASeq.ReferenceAnnotation",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_bowtie2_idx": {
                "name": "Plant Bowtie2 Indexes",
                "type": "KBaseRNASeq.Bowtie2Indexes",
                "ws": "PlantCSGenomes",
                "search": false
            }
        },
        "exampleData": {
            "ws": "KBaseExampleData",
            "data_types": [
                {
                    "name": [
                        "SingleEndLibrary",
                        "PairedEndLibrary",
                        "ReferenceAssembly"
                    ],
                    "displayName": "Example Sequence Assembly Inputs",
                    "header": "Various types of read data configured for sequence assembly."
                },
                {
                    "name": [
                        "ContigSet"
                    ],
                    "displayName": "Example Contig Sets",
                    "header": "A set of DNA sequences"
                },
                {
                    "name": [
                        "Genome"
                    ],
                    "displayName": "Example Genomes",
                    "header": "Genomic sequence generally with attached functional annotations"
                },
                {
                    "name": [
                        "FBAModel"
                    ],
                    "displayName": "Example FBAModels",
                    "header": "A metabolic model of an organism"
                },
                {
                    "name": [
                        "Media"
                    ],
                    "displayName": "Example Media",
                    "header": "Specification of an environmental condition"
                },
                {
                    "name": [
                        "ExpressionMatrix"
                    ],
                    "displayName": "Example ExpressionMatrix",
                    "header": "Gene expression data in a gene vs. condition matrix"
                },
                {
                    "name": [
                        "TranscriptomeHack"
                    ],
                    "displayName": "Example Sorghum Transcriptomes",
                    "header": "Sorghum bicolor transcriptome data in response to ABA and osmotic stress"
                }
            ]
        }
    },
    "prod": {
        "publicData": {
            "genomes": {
                "name": "Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "KBasePublicGenomesV5",
                "search": true
            },
            "media": {
                "name": "Media",
                "type": "KBaseBiochem.Media",
                "ws": "KBaseMedia",
                "search": false
            },
            "plant_gnms": {
                "name": "Plant Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "se_reads": {
                "name": "RNA-seq Reads (single-end)",
                "type": "KBaseAssembly.SingleEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "pe_reads": {
                "name": "RNA-seq Reads (paired-end)",
                "type": "KBaseAssembly.PairedEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_rnaseq_anno": {
                "name": "Plant RNA-seq Annotations",
                "type": "KBaseRNASeq.ReferenceAnnotation",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_bowtie2_idx": {
                "name": "Plant Bowtie2 Indexes",
                "type": "KBaseRNASeq.Bowtie2Indexes",
                "ws": "PlantCSGenomes",
                "search": false
            }
        },
        "exampleData": {
            "ws": "KBaseExampleData",
            "data_types": [
                {
                    "name": [
                        "SingleEndLibrary",
                        "PairedEndLibrary",
                        "ReferenceAssembly"
                    ],
                    "displayName": "Example Sequence Assembly Inputs",
                    "header": "Various types of read data configured for sequence assembly."
                },
                {
                    "name": [
                        "ContigSet"
                    ],
                    "displayName": "Example Contig Sets",
                    "header": "A set of DNA sequences"
                },
                {
                    "name": [
                        "Genome"
                    ],
                    "displayName": "Example Genomes",
                    "header": "Genomic sequence generally with attached functional annotations"
                },
                {
                    "name": [
                        "FBAModel"
                    ],
                    "displayName": "Example FBAModels",
                    "header": "A metabolic model of an organism"
                },
                {
                    "name": [
                        "Media"
                    ],
                    "displayName": "Example Media",
                    "header": "Specification of an environmental condition"
                },
                {
                    "name": [
                        "ExpressionMatrix"
                    ],
                    "displayName": "Example ExpressionMatrix",
                    "header": "Gene expression data in a gene vs. condition matrix"
                },
                {
                    "name": [
                        "TranscriptomeHack"
                    ],
                    "displayName": "Example Sorghum Transcriptomes",
                    "header": "Sorghum bicolor transcriptome data in response to ABA and osmotic stress"
                }
            ]
        }
    }
}
<commit_msg>Fixing specs on public genome listing<commit_after>{
    "ci": {
        "publicData": {
            "genomes": {
                "name": "Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "KBasePublicGenomesV5",
                "search": true
            },
            "refseq_genomes": {
                "name": "RefSeq Genomes",
                "type": "KBaseGenomeAnnotations.GenomeAnnotation",
                "ws": "RefSeq_Genomes",
                "search": false
            },
            "phytozome_genomes": {
                "name": "Phytozome Genomes",
                "type": "KBaseGenomeAnnotations.GenomeAnnotation",
                "ws": "Phytozome_Genomes",
                "search": false
            },
            "ensembl_genomes": {
                "name": "Ensembl Genomes",
                "type": "KBaseGenomeAnnotations.GenomeAnnotation",
                "ws": "ReferenceEnsemblPlantGenomeAnnotations",
                "search": false
            },
            "media": {
                "name": "Media",
                "type": "KBaseBiochem.Media",
                "ws": "KBaseMedia",
                "search": false
            },
            "plant_gnms": {
                "name": "Plant Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "se_reads": {
                "name": "RNA-seq Reads (single-end)",
                "type": "KBaseAssembly.SingleEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "pe_reads": {
                "name": "RNA-seq Reads (paired-end)",
                "type": "KBaseAssembly.PairedEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_rnaseq_anno": {
                "name": "Plant RNA-seq Annotations",
                "type": "KBaseRNASeq.ReferenceAnnotation",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_bowtie2_idx": {
                "name": "Plant Bowtie2 Indexes",
                "type": "KBaseRNASeq.Bowtie2Indexes",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "ontology": {
                "name": "Public ontologies",
                "type": "KBaseOntology.OntologyDictionary",
                "ws": "KBaseOntology",
                "search": false
            },
            "ontology_translation": {
                "name": "Ontology translations",
                "type": "KBaseOntology.OntologyTranslation",
                "ws": "KBaseOntology",
                "search": false
            }
        },
        "exampleData": {
            "ws": "KBaseExampleData",
            "data_types": [
                {
                    "name": [
                        "SingleEndLibrary",
                        "PairedEndLibrary",
                        "ReferenceAssembly"
                    ],
                    "displayName": "Example Sequence Assembly Inputs",
                    "header": "Various types of read data configured for sequence assembly."
                },
                {
                    "name": [
                        "ContigSet"
                    ],
                    "displayName": "Example Contig Sets",
                    "header": "A set of DNA sequences"
                },
                {
                    "name": [
                        "Genome"
                    ],
                    "displayName": "Example Genomes",
                    "header": "Genomic sequence generally with attached functional annotations"
                },
                {
                    "name": [
                        "FBAModel"
                    ],
                    "displayName": "Example FBAModels",
                    "header": "A metabolic model of an organism"
                },
                {
                    "name": [
                        "Media"
                    ],
                    "displayName": "Example Media",
                    "header": "Specification of an environmental condition"
                },
                {
                    "name": [
                        "ExpressionMatrix"
                    ],
                    "displayName": "Example ExpressionMatrix",
                    "header": "Gene expression data in a gene vs. condition matrix"
                },
                {
                    "name": [
                        "TranscriptomeHack"
                    ],
                    "displayName": "Example Sorghum Transcriptomes",
                    "header": "Sorghum bicolor transcriptome data in response to ABA and osmotic stress"
                }
            ]
        }
    },
    "next": {
        "publicData": {
            "genomes": {
                "name": "Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "KBasePublicGenomesV5",
                "search": true
            },
            "media": {
                "name": "Media",
                "type": "KBaseBiochem.Media",
                "ws": "KBaseMedia",
                "search": false
            },
            "plant_gnms": {
                "name": "Plant Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "se_reads": {
                "name": "RNA-seq Reads (single-end)",
                "type": "KBaseAssembly.SingleEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "pe_reads": {
                "name": "RNA-seq Reads (paired-end)",
                "type": "KBaseAssembly.PairedEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_rnaseq_anno": {
                "name": "Plant RNA-seq Annotations",
                "type": "KBaseRNASeq.ReferenceAnnotation",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_bowtie2_idx": {
                "name": "Plant Bowtie2 Indexes",
                "type": "KBaseRNASeq.Bowtie2Indexes",
                "ws": "PlantCSGenomes",
                "search": false
            }
        },
        "exampleData": {
            "ws": "KBaseExampleData",
            "data_types": [
                {
                    "name": [
                        "SingleEndLibrary",
                        "PairedEndLibrary",
                        "ReferenceAssembly"
                    ],
                    "displayName": "Example Sequence Assembly Inputs",
                    "header": "Various types of read data configured for sequence assembly."
                },
                {
                    "name": [
                        "ContigSet"
                    ],
                    "displayName": "Example Contig Sets",
                    "header": "A set of DNA sequences"
                },
                {
                    "name": [
                        "Genome"
                    ],
                    "displayName": "Example Genomes",
                    "header": "Genomic sequence generally with attached functional annotations"
                },
                {
                    "name": [
                        "FBAModel"
                    ],
                    "displayName": "Example FBAModels",
                    "header": "A metabolic model of an organism"
                },
                {
                    "name": [
                        "Media"
                    ],
                    "displayName": "Example Media",
                    "header": "Specification of an environmental condition"
                },
                {
                    "name": [
                        "ExpressionMatrix"
                    ],
                    "displayName": "Example ExpressionMatrix",
                    "header": "Gene expression data in a gene vs. condition matrix"
                },
                {
                    "name": [
                        "TranscriptomeHack"
                    ],
                    "displayName": "Example Sorghum Transcriptomes",
                    "header": "Sorghum bicolor transcriptome data in response to ABA and osmotic stress"
                }
            ]
        }
    },
    "prod": {
        "publicData": {
            "genomes": {
                "name": "Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "KBasePublicGenomesV5",
                "search": true
            },
            "media": {
                "name": "Media",
                "type": "KBaseBiochem.Media",
                "ws": "KBaseMedia",
                "search": false
            },
            "plant_gnms": {
                "name": "Plant Genomes",
                "type": "KBaseGenomes.Genome",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "se_reads": {
                "name": "RNA-seq Reads (single-end)",
                "type": "KBaseAssembly.SingleEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "pe_reads": {
                "name": "RNA-seq Reads (paired-end)",
                "type": "KBaseAssembly.PairedEndLibrary",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_rnaseq_anno": {
                "name": "Plant RNA-seq Annotations",
                "type": "KBaseRNASeq.ReferenceAnnotation",
                "ws": "PlantCSGenomes",
                "search": false
            },
            "plant_bowtie2_idx": {
                "name": "Plant Bowtie2 Indexes",
                "type": "KBaseRNASeq.Bowtie2Indexes",
                "ws": "PlantCSGenomes",
                "search": false
            }
        },
        "exampleData": {
            "ws": "KBaseExampleData",
            "data_types": [
                {
                    "name": [
                        "SingleEndLibrary",
                        "PairedEndLibrary",
                        "ReferenceAssembly"
                    ],
                    "displayName": "Example Sequence Assembly Inputs",
                    "header": "Various types of read data configured for sequence assembly."
                },
                {
                    "name": [
                        "ContigSet"
                    ],
                    "displayName": "Example Contig Sets",
                    "header": "A set of DNA sequences"
                },
                {
                    "name": [
                        "Genome"
                    ],
                    "displayName": "Example Genomes",
                    "header": "Genomic sequence generally with attached functional annotations"
                },
                {
                    "name": [
                        "FBAModel"
                    ],
                    "displayName": "Example FBAModels",
                    "header": "A metabolic model of an organism"
                },
                {
                    "name": [
                        "Media"
                    ],
                    "displayName": "Example Media",
                    "header": "Specification of an environmental condition"
                },
                {
                    "name": [
                        "ExpressionMatrix"
                    ],
                    "displayName": "Example ExpressionMatrix",
                    "header": "Gene expression data in a gene vs. condition matrix"
                },
                {
                    "name": [
                        "TranscriptomeHack"
                    ],
                    "displayName": "Example Sorghum Transcriptomes",
                    "header": "Sorghum bicolor transcriptome data in response to ABA and osmotic stress"
                }
            ]
        }
    }
}

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