<commit_before>###############################################################
## Cfg                                                       ##
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usrID       = c('Douglas Kelley' = 'AJKyfI4AAAAJ')

###############################################################
## Head                                                      ##
###############################################################
Top = NULL


###############################################################
## Basic Infomation                                          ##
###############################################################
Name    = c("<NAME>",
            post,
            'Publication & Presentation List')

Contact = NULL

Authors = c("<NAME>", "<NAME>")

Published = MakePublicationDocument.Rlist(usrID, NULL)

replaceAuthor <- function(pub) {
    if (pub[1] == "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, ...")
        pub[1] =  "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>ntice, <NAME>, <NAME>, <NAME>"

    if (pub[1] == "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, ...")
        pub[1] =  "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>‐Stroud, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, P‐<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>"

    if (pub[1] == "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, ...")
        pub[1] =  "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>"

    return(pub)
}

Published = lapply(Published, replaceAuthor)

#Published = c(Published[1:6], "New Page", Published[7:length(Published)])

Publications = list(Name = "Publications",
                    Main = MakeUserProfile(usrID, 'unformatted'),
                    c("Published Papers",
                         Published),

                    list("Submitted",

                         c("<NAME>, DI Kelley,",
                           "Projected changes in Australian fire regimes during the 21<sup>st</sup> century and consequences for ecosystems",
                           "International Journal of Wildland Fire",
                           "",
                           "",
                           ""),

                         c("<NAME>, <NAME>, SP Harrison, DI Kelley, IC Prentice, SS Rabin, S Archibald. ...",
                           "The status and challenge of global fire modelling",
                           "Biogeosciences",
                           "bg-2016-17",
                           "",
                           ""),

                        "New Page",

                         c("<NAME>, <NAME>, DI Kelley, IC Prentice",
                           "Vegetation buffers the water-resource impacts of environmental change in regions with declining precipitation",
                           "Environmental Research Letters",
                           "ERL-102203",
                           "",
                           "")),

                    list("In Prep",

                         c("DI Kelley, <NAME>, <NAME>",
                           "Testing allocation strategies in a simple ecosystem model",
                           "",
                           "",
                           "",
                           ""),

                         c("<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>",
                           "Patterns in the abundance of post-fire resprouting in Australia based on plot-level measurements.",
                           "",
                           "",
                           "",
                           ""),

                         c("<NAME>, DI Kelley, <NAME>, <NAME>",
                           "Phendulum - A first principles model of describing savanna phenology",
                           "",
                           "",
                           "",
                           ""),
                         c("<NAME>, <NAME>, <NAME>, ...",
                           "The Fire Modeling Intercomparison Project (FireMIP): Observational comparisons and model evaluation",
                           "",
                           "",
                           "",
                           "")))


Conferences =  list(Name = "Conferences",
                    list("Conference Presentations & Posters",

                         c("<NAME>, <NAME>, IC Prentice",
                           "Implications of introducing realistic fire response traits in a Dynamic Global Vegetation Model",
                           "AGU Fall Meeting - Presentation Abstracts",
                           "1,  p.6.",
                           "Dec 2013",
                           ""),

                         c("<NAME>, <NAME>",
                           "Comparison of simulated fire regimes at the Last Glacial Maximum and Mid-Holocene with charcoal data",
                           "QUEST: Quantifying and Understanding the Earth System Open Science Conference and Annual Science Meeting",
                           "Department of Earth Sciences, University of Bristol",
                           "Mar 2008",
                           "")),

                    list("Visits and Internal Presentations",

                         c("<NAME>, <NAME>, IC Prentice, BE Medlyn",
                           "Modelling Australian Fire Regimes",
                           "Thesis completion seminar",
                           "Macquarie University, Ryde, Australia",
                           "Mar 2015",
                           ""),

                         c("<NAME>, <NAME>, IC Prentice",
                           "The LPX fire-enabled Vegetation Model",
                           "visit to Centre for Environmental Risk Management of Bushfires",
                           "University of Wollongong, NSW, Australia",
                           "May 2013",
                           ""),

                         c("<NAME>, SP Harrison, IC Prentice, B Medlyn",
                           "The effects of climate change on Australian fire regimes",
                           "Postgraduate supplementary conference",
                           "Macquarie University, Ryde, Australia",
                           "Nov 2012",
                           ""),

                         c("<NAME>",
                           "Development of lightning ignitions scheme in LPX-DGVM",
                           "Biosphere and Climate Dynamics brown bag seminars",
                           "Macquarie University, Ryde, Australia",
                           "Sep 2012",
                           ""),

                         c("<NAME>",
                           "Benchmarking the LPX-DGVM",
                           "Biosphere and Climate Dynamics brown bag seminars",
                           "Macquarie University, Ryde, Australia",
                           "Mar 2012",
                           ""),

                         c("<NAME>, IC Prentice, <NAME>, <NAME>, <NAME>",
                           "A comprehensive benchmarking system for evaluating global vegetation models",
                           "Climate Futures Forum",
                           "Macquarie University, Ryde, Australia",
                           "Dec 2011",
                           ""),

                         c("<NAME>, IC Prentice, <NAME>, <NAME>, <NAME>",
                           "A comprehensive benchmarking system for evaluating global vegetation models",
                           "Postgraduate supplementary conference",
                           "Macquarie University, Ryde, Australia",
                           "Nov 2011",
                           ""),

                         c("<NAME>",
                           "Benchmark data-sets for assessing DGVM performance",
                           "Biosphere and Climate Dynamics brown bag seminars",
                           "Macquarie University, Ryde, Australia",
                           "Sep 2011",
                           ""),

                           "New Page",

                         c("<NAME>, <NAME>ison, IC Prentice",
                           "The effects of climate change on Australian fire regimes",
                           "Postgraduate supplementary conference",
                           "Macquarie University, Ryde, Australia",
                           "Nov 2010",
                           ""),

                         c("<NAME>",
                           "Transient Biomization Scheme",
                           "course seminar for MSc Earth Systems Science",
                           "Department of Earth Sciences, University of Bristol",
                           "Jul 2008",
                           ""),

                         c("<NAME>, <NAME>",
                           "Forest Fire simulator",
                           "course seminar for MSc Earth Systems Science",
                           "Department of Earth Sciences, University of Bristol",
                           "Nov 2007",
                           "")))

AdditionalSection = list(Publications, Conferences)<commit_msg>adding software section to publicatons<commit_after>###############################################################
## Cfg                                                       ##
###############################################################
usrID       = c('<NAME>' = 'AJKyfI4AAAAJ')

###############################################################
## Head                                                      ##
###############################################################
Top = NULL


###############################################################
## Basic Infomation                                          ##
###############################################################
Name    = c("<NAME>",
            post,
            'Publication & Presentation List')

Contact = NULL

Authors = c("<NAME>", "<NAME>")

Published = MakePublicationDocument.Rlist(usrID, NULL)

replaceAuthor <- function(pub) {
    if (pub[1] == "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, ...")
        pub[1] =  "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>ice, <NAME>, <NAME>, <NAME>"

    if (pub[1] == "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, ...")
        pub[1] =  "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>‐Stroud, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, P‐<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>"

    if (pub[1] == "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, ...")
        pub[1] =  "<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>"

    return(pub)
}

Published = lapply(Published, replaceAuthor)

#Published = c(Published[1:6], "New Page", Published[7:length(Published)])

Publications = list(Name = "Publications",
                    Main = MakeUserProfile(usrID, 'unformatted'),
                    c("Published Papers",
                         Published),

                    list("Submitted",

                         c("<NAME>, DI Kelley,",
                           "Projected changes in Australian fire regimes during the 21<sup>st</sup> century and consequences for ecosystems",
                           "International Journal of Wildland Fire",
                           "",
                           "",
                           ""),

                         c("<NAME>, <NAME>, <NAME>, <NAME>, IC Prentice, <NAME>, <NAME>. ...",
                           "The status and challenge of global fire modelling",
                           "Biogeosciences",
                           "bg-2016-17",
                           "2016",
                           ""),

                        "New Page",

                         c("<NAME>, <NAME>, DI Kelley, IC Prentice",
                           "Vegetation buffers the water-resource impacts of environmental change in regions with declining precipitation",
                           "Environmental Research Letters",
                           "ERL-102203",
                           "",
                           "")),

                    list("In Prep",

                         c("<NAME>, <NAME>, <NAME>",
                           "Testing allocation strategies in a simple ecosystem model",
                           "",
                           "",
                           "",
                           ""),

                         c("<NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>, <NAME>",
                           "Patterns in the abundance of post-fire resprouting in Australia based on plot-level measurements.",
                           "",
                           "",
                           "",
                           ""),

                         c("<NAME>, <NAME>, <NAME>, <NAME>",
                           "Phendulum - A first principles model of describing savanna phenology",
                           "",
                           "",
                           "",
                           ""),
                         c("<NAME>, <NAME>, <NAME>, ...",
                           "The Fire Modeling Intercomparison Project (FireMIP): Observational comparisons and model evaluation",
                           "",
                           "",
                           "",
                           "")))
Software    =  list(Name = "Software libraries and packages",
                    list("Open source",
                         c("<NAME>, <NAME>",
                           "gitBasedProjects: Extra functions for integrating with git based projects",
                           "R package version 3.10",
                           "http://douglask3.github.io/tools",
                           "2016",
                           ""),
                          c("<NAME>",
                            "benchmarkMetrics: Benchmark Metrics",
                            "R package version 2.0",
                            "http://douglask3.github.io/tools",
                            "2015",
                            "")),
                    list("In Prep.",
                         c("<NAME>",
                           "rasterExtras: Extra Raster Functions",
                           "R package version 1.0",
                           ""
                           ""
                           ""),
                         c("<NAME>",
                           "rasterPlot: Raster Plotting functions",
                           "R package version 1.0",
                           ""
                           ""
                           "")))

Conferences =  list(Name = "Conferences",
                    list("Conference Presentations & Posters",

                         c("<NAME>, <NAME>, IC Prentice",
                           "Implications of introducing realistic fire response traits in a Dynamic Global Vegetation Model",
                           "AGU Fall Meeting - Presentation Abstracts",
                           "1,  p.6.",
                           "Dec 2013",
                           ""),

                         c("<NAME>, <NAME>",
                           "Comparison of simulated fire regimes at the Last Glacial Maximum and Mid-Holocene with charcoal data",
                           "QUEST: Quantifying and Understanding the Earth System Open Science Conference and Annual Science Meeting",
                           "Department of Earth Sciences, University of Bristol",
                           "Mar 2008",
                           "")),

                    list("Visits and Internal Presentations",

                         c("<NAME>, SP Harrison, IC Prentice, BE Medlyn",
                           "Modelling Australian Fire Regimes",
                           "Thesis completion seminar",
                           "Macquarie University, Ryde, Australia",
                           "Mar 2015",
                           ""),

                         c("DI Kelley, SP Harrison, IC Prentice",
                           "The LPX fire-enabled Vegetation Model",
                           "visit to Centre for Environmental Risk Management of Bushfires",
                           "University of Wollongong, NSW, Australia",
                           "May 2013",
                           ""),

                         c("<NAME>, SP Harrison, IC Prentice, B Medlyn",
                           "The effects of climate change on Australian fire regimes",
                           "Postgraduate supplementary conference",
                           "Macquarie University, Ryde, Australia",
                           "Nov 2012",
                           ""),

                         c("<NAME>",
                           "Development of lightning ignitions scheme in LPX-DGVM",
                           "Biosphere and Climate Dynamics brown bag seminars",
                           "Macquarie University, Ryde, Australia",
                           "Sep 2012",
                           ""),

                         c("<NAME>",
                           "Benchmarking the LPX-DGVM",
                           "Biosphere and Climate Dynamics brown bag seminars",
                           "Macquarie University, Ryde, Australia",
                           "Mar 2012",
                           ""),

                         c("DI Kelley, IC Prentice, <NAME>, <NAME>, SP Harrison",
                           "A comprehensive benchmarking system for evaluating global vegetation models",
                           "Climate Futures Forum",
                           "Macquarie University, Ryde, Australia",
                           "Dec 2011",
                           ""),

                         c("DI Kelley, IC Prentice, <NAME>, <NAME>, SP Harrison",
                           "A comprehensive benchmarking system for evaluating global vegetation models",
                           "Postgraduate supplementary conference",
                           "Macquarie University, Ryde, Australia",
                           "Nov 2011",
                           ""),

                         c("DI Kelley",
                           "Benchmark data-sets for assessing DGVM performance",
                           "Biosphere and Climate Dynamics brown bag seminars",
                           "Macquarie University, Ryde, Australia",
                           "Sep 2011",
                           ""),

                           "New Page",

                         c("<NAME>, <NAME>, IC Prentice",
                           "The effects of climate change on Australian fire regimes",
                           "Postgraduate supplementary conference",
                           "Macquarie University, Ryde, Australia",
                           "Nov 2010",
                           ""),

                         c("<NAME>",
                           "Transient Biomization Scheme",
                           "course seminar for MSc Earth Systems Science",
                           "Department of Earth Sciences, University of Bristol",
                           "Jul 2008",
                           ""),

                         c("<NAME>, <NAME>",
                           "Forest Fire simulator",
                           "course seminar for MSc Earth Systems Science",
                           "Department of Earth Sciences, University of Bristol",
                           "Nov 2007",
                           "")))

AdditionalSection = list(Publications, Software, Conferences)
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