<commit_before>[projects]
projects=mips,asclepios-private,ttk-private,vistal,asclepios-private,qtshanoir,qtdcm,visages-private

# #######################
# Projects Configurations
# For PRIVATE projects you will need to set up and public/private key pair and unlock it.
# #######################

[qtshanoir]
source_host=scm.gforge.inria.fr
source_file=qtshanoir/qtshanoir.git
scm=git

[qtdcm]
source_host=scm.gforge.inria.fr
source_file=qtdcm/qtdcm.git
scm=git

# still cannot clone, need to take a look at the installer's code
# git clone git+ssh://smedina@scm.gforge.inria.fr/git/ttk/ttk.git
[ttk-private]
source_host=scm.gforge.inria.fr
source_file=git/ttk/ttk.git
scm=git
username=smedina
scm_protocol=ssh
destination_dir=ttk-private
project_name=ttk-private

# MIPS, my friend, is a pain in the neck
# it is required to enter usernames and passwords
# so in order to save time now, I will svn-checkout it by hand
[mips]
source_host=scm.gforge.inria.fr
source_file=svn/mips/trunk
scm=svn
username=smedina
scm_protocol=ssh

[asclepios-private]
source_host=dev-med.inria.fr
source_file=medinria-asclepios/medinria-plugins-private.git
username=git
scm=git
scm_protocol=ssh

[vistal]
source_host=scm.gforge.inria.fr
source_file=svn/vistal/trunk/Vistal
scm=svn
username=smedina
scm_protocol=ssh


[visages-private]
source_host=dev-med.inria.fr
source_file=medinria-visages/medinria-visages-plugins.git
username=git
scm=git
scm_protocol=ssh

# ####################
# CMake Configurations
# ####################

[mips-cmake]
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s
VTK_DIR:PATH=%(projects_dir)s/vtk-5.8.0/%(build_dir)s
TTK_DIR:PATH=%(projects_dir)s/ttk-public/%(build_dir)s
BUILD_TESTING:BOOL=OFF
USE_ITK:BOOL=ON
USE_VTK:BOOL=ON
# needed for asclepios-private
USE_GMM:BOOL=ON
USE_BOOST:BOOL=ON
USE_BOOST_INTERNAL:BOOL=OFF
USE_BOOST_EXTERNAL:BOOL=ON
Boost_INCLUDE_DIRS:PATH=/usr/include/boost
Boost_LIBRARY_DIRS:PATH=/usr/lib
# suggested by Oliv
TTK_USE_VTKINRIA3D:BOOL=ON
USE_MTL:BOOL=ON
YAV_BUILD_GUI:BOOL=OFF
YAV_BUILD_NON_GUI:BOOL=OFF
vtkINRIA3D_DIR:PATH=%(projects_dir)s/vtkinria3d-public/%(build_dir)s

[ttk-private-cmake]
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s
VTK_DIR:PATH=%(projects_dir)s/vtk-5.8.0/%(build_dir)s
TTK_DIR:PATH=%(projects_dir)s/ttk-public/%(build_dir)s

[asclepios-private-cmake]
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s
VTK_DIR:PATH=%(projects_dir)s/vtk-5.8.0/%(build_dir)s
dtk_DIR:PATH=%(projects_dir)s/dtk/%(build_dir)s
vtkINRIA3D_DIR:PATH=%(projects_dir)s/vtkinria3d-public/%(build_dir)s
medinria_DIR:PATH=%(projects_dir)s/medinria/%(build_dir)s
TTK-Private_DIR:PATH=%(projects_dir)s/ttk-private/%(build_dir)s
MIPS_DIR:PATH=%(projects_dir)s/mips/%(build_dir)s
TTK_DIR:PATH=%(projects_dir)s/ttk-public/%(build_dir)s
medinria-pugins_dir:PATH=%(projects_dir)s/medinria-plugins/%(build_dir)s

[vistal-cmake]
BUILD_PACKAGE:BOOL=ON
BOOST_INCLUDE_DIR:PATH=/usr/include/boost
VTK_DIR:PATH=%(projects_dir)s/vtk-5.8.0/%(build_dir)s
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s

[qtshanoir-cmake]
BUILD_PACKAGE:BOOL=ON
BUILD_SHARED_LIBS:BOOL=ON

[qtdcm-cmake]
BUILD_PACKAGE:BOOL=ON
BUILD_SHARED_LIBS:BOOL=ON
#the following two lines need to be changed for a full configuration of dcmtk
DCMTK_DIR:PATH=%(projects_dir)s/dcmtk/%(build_dir)s
DCMTK_SOURCE_DIR:PATH=%(projects_dir)s/dcmtk
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s

[visages-private-cmake]
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s
dtk_DIR:PATH=%(projects_dir)s/dtk/%(build_dir)s
medinria_DIR:PATH=%(projects_dir)s/medinria/%(build_dir)s
Vistal_DIR:PATH=%(projects_dir)s/vistal/%(build_dir)s
QTSHANOIR_DIR:PATH=%(projects_dir)s/qtshanoir/%(build_dir)s
QTDCM_DIR:PATH=%(projects_dir)s/qtdcm/%(build_dir)s
MEDINRIA_BUILD_QTDCMDATASOURCE_PLUGIN:BOOL=ON
MEDINRIA_BUILD_QTSHANOIRDATASOURCE_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALDATAIMAGECONVERTER_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALDATAIMAGEREADER_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALDATAIMAGEWRITER_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALDATAIMAGE_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALPROCESSBIAS_REMOVAL_PLUGIN:BOOL=OFF
MEDINRIA_BUILD_VISTALPROCESSDENOISINGNLMEANS_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALPROCESSMIDPLANE_ALIGN_PLUGIN:BOOL=OFF
MEDINRIA_BUILD_VISTALPROCESSSEGMENTATIONGCEM_PLUGIN:BOOL=OFF
MEDINRIA_BUILD_VISTALPROCESSSEGMENTATIONSTREM_PLUGIN:BOOL=OFF

<commit_msg>Small changes in private projects conf file.<commit_after>[projects]
projects=mips,asclepios-private,ttk-private,vistal,asclepios-private,qtshanoir,qtdcm,visages-private

# #######################
# Projects Configurations
# For PRIVATE projects you will need to set up and public/private key pair and unlock it.
# #######################

[qtshanoir]
source_host=scm.gforge.inria.fr
source_file=qtshanoir/qtshanoir.git
scm=git

[qtdcm]
source_host=scm.gforge.inria.fr
source_file=qtdcm/qtdcm.git
scm=git

# still cannot clone, need to take a look at the installer's code
# git clone git+ssh://smedina@scm.gforge.inria.fr/git/ttk/ttk.git
[ttk-private]
source_host=scm.gforge.inria.fr
source_file=git/ttk/ttk.git
scm=git
username=smedina
scm_protocol=ssh
destination_dir=ttk-private
project_name=ttk-private

# MIPS, my friend, is a pain in the neck
# it is required to enter usernames and passwords
# so in order to save time now, I will svn-checkout it by hand
[mips]
source_host=scm.gforge.inria.fr
source_file=svn/mips/trunk
scm=svn
username=smedina
scm_protocol=ssh

[asclepios-private]
source_host=dev-med.inria.fr
source_file=medinria-asclepios/medinria-plugins-private.git
username=git
scm=git
scm_protocol=ssh

[vistal]
source_host=scm.gforge.inria.fr
source_file=svn/vistal/trunk/Vistal
scm=svn
username=smedina
scm_protocol=ssh

[visages-private]
source_host=dev-med.inria.fr
source_file=medinria-visages/medinria-visages-plugins.git
username=git
scm=git
scm_protocol=ssh

# ####################
# CMake Configurations
# ####################

[mips-cmake]
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s
VTK_DIR:PATH=%(projects_dir)s/vtk-5.8.0/%(build_dir)s
TTK_DIR:PATH=%(projects_dir)s/ttk-public/%(build_dir)s
BUILD_TESTING:BOOL=OFF
USE_ITK:BOOL=ON
USE_VTK:BOOL=ON
# needed for asclepios-private
USE_GMM:BOOL=ON
USE_BOOST:BOOL=ON
USE_BOOST_INTERNAL:BOOL=OFF
USE_BOOST_EXTERNAL:BOOL=ON
Boost_INCLUDE_DIRS:PATH=/usr/include/boost
Boost_LIBRARY_DIRS:PATH=/usr/lib
# suggested by Oliv
TTK_USE_VTKINRIA3D:BOOL=ON
USE_MTL:BOOL=ON
YAV_BUILD_GUI:BOOL=OFF
YAV_BUILD_NON_GUI:BOOL=ON
vtkINRIA3D_DIR:PATH=%(projects_dir)s/vtkinria3d-public/%(build_dir)s

[ttk-private-cmake]
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s
VTK_DIR:PATH=%(projects_dir)s/vtk-5.8.0/%(build_dir)s
TTK_DIR:PATH=%(projects_dir)s/ttk-public/%(build_dir)s

[asclepios-private-cmake]
BUILD_TESTING:BOOL=OFF
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s
VTK_DIR:PATH=%(projects_dir)s/vtk-5.8.0/%(build_dir)s
dtk_DIR:PATH=%(projects_dir)s/dtk/%(build_dir)s
vtkINRIA3D_DIR:PATH=%(projects_dir)s/vtkinria3d-public/%(build_dir)s
medinria_DIR:PATH=%(projects_dir)s/medinria/%(build_dir)s
TTK-Private_DIR:PATH=%(projects_dir)s/ttk-private/%(build_dir)s
MIPS_DIR:PATH=%(projects_dir)s/mips/%(build_dir)s
TTK_DIR:PATH=%(projects_dir)s/ttk-public/%(build_dir)s
#medinria-plugins_dir:PATH=%(projects_dir)s/medinria-plugins/%(build_dir)s
medinria-plugins_DIR:PATH=%(projects_dir)s/medinria-plugins/%(build_dir)s

[vistal-cmake]
BUILD_PACKAGE:BOOL=ON
BOOST_INCLUDE_DIR:PATH=/usr/include/boost
VTK_DIR:PATH=%(projects_dir)s/vtk-5.8.0/%(build_dir)s
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s

[qtshanoir-cmake]
BUILD_PACKAGE:BOOL=ON
BUILD_SHARED_LIBS:BOOL=ON

[qtdcm-cmake]
BUILD_PACKAGE:BOOL=ON
BUILD_SHARED_LIBS:BOOL=ON
#the following two lines need to be changed for a full configuration of dcmtk
DCMTK_DIR:PATH=%(projects_dir)s/dcmtk/%(build_dir)s
DCMTK_SOURCE_DIR:PATH=%(projects_dir)s/dcmtk
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s

[visages-private-cmake]
ITK_DIR:PATH=%(projects_dir)s/itk-3.20.0/%(build_dir)s
dtk_DIR:PATH=%(projects_dir)s/dtk/%(build_dir)s
medinria_DIR:PATH=%(projects_dir)s/medinria/%(build_dir)s
Vistal_DIR:PATH=%(projects_dir)s/vistal/%(build_dir)s
QTSHANOIR_DIR:PATH=%(projects_dir)s/qtshanoir/%(build_dir)s
QTDCM_DIR:PATH=%(projects_dir)s/qtdcm/%(build_dir)s
MEDINRIA_BUILD_QTDCMDATASOURCE_PLUGIN:BOOL=ON
MEDINRIA_BUILD_QTSHANOIRDATASOURCE_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALDATAIMAGECONVERTER_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALDATAIMAGEREADER_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALDATAIMAGEWRITER_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALDATAIMAGE_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALPROCESSBIAS_REMOVAL_PLUGIN:BOOL=OFF
MEDINRIA_BUILD_VISTALPROCESSDENOISINGNLMEANS_PLUGIN:BOOL=ON
MEDINRIA_BUILD_VISTALPROCESSMIDPLANE_ALIGN_PLUGIN:BOOL=OFF
MEDINRIA_BUILD_VISTALPROCESSSEGMENTATIONGCEM_PLUGIN:BOOL=OFF
MEDINRIA_BUILD_VISTALPROCESSSEGMENTATIONSTREM_PLUGIN:BOOL=OFF


{'fraction_non_alphanumeric': 0.1440162271805274, 'fraction_numerical': 0.009240477800315528, 'mean_word_length': 9.862913096695227, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 2, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6429138', 'n_tokens_mistral': 4033, 'n_tokens_neox': 3941, 'n_words': 392}