<commit_before># SCExecute Input Files

## Read Alignment Files

Read alignment files in indexed BAM format. Filename extension `.bam`
expected with `.bam.bai` index files in the same folder. SCExecute will
execute fastest if all BAM files are sorted and indexed in a
consistent manner.

<commit_msg>edits<commit_after># SCExecute Input Files

## Read Alignment Files

Read alignment files in indexed BAM format. Filename extension `.bam`
expected with `.bam.bai` index files in the same folder. 


{'fraction_non_alphanumeric': 0.06224899598393574, 'fraction_numerical': 0.0, 'mean_word_length': 4.606741573033708, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6617613', 'n_tokens_mistral': 146, 'n_tokens_neox': 139, 'n_words': 68}