<commit_before>annotools.prototype.generateGeoTemplate = function () {
  
  var case_id = this.iid
  var subject_id = case_id.substr(0,12);
  if(subject_id.substr(0,4) != "TCGA"){
    subject_id = "";
  }

  var execution_id = annotool.execution_id ;
  
  var geoJSONTemplate = {
    'type': 'Feature',
    'parent_id': 'self',
    'randval': Math.random(),
    'geometry': {
      'type': 'Polygon',
      'coordinates': []
    },
    'normalized': true,
    'object_type': 'annotation', // nucleus?
    'properties': {
      'scalar_features': [],
      'annotations': []
    },
    'footprint': 10000,
    'provenance': {
      'analysis': {
        'execution_id': execution_id,
        'study_id': "",
        'source': "human",
        'computation': 'segmentation'
      },
      'image': {
        'case_id': case_id,<commit_msg>Update geoJSONHandler_sc.js<commit_after>annotools.prototype.generateGeoTemplate = function () {
  
  var case_id = this.iid
  var subject_id = case_id.substr(0,12);
  if(subject_id.substr(0,4) != "TCGA"){
    //subject_id = "";
  }

  var execution_id = annotool.execution_id ;
  
  var geoJSONTemplate = {
    'type': 'Feature',
    'parent_id': 'self',
    'randval': Math.random(),
    'geometry': {
      'type': 'Polygon',
      'coordinates': []
    },
    'normalized': true,
    'object_type': 'annotation', // nucleus?
    'properties': {
      'scalar_features': [],
      'annotations': []
    },
    'footprint': 10000,
    'provenance': {
      'analysis': {
        'execution_id': execution_id,
        'study_id': "",
        'source': "human",
        'computation': 'segmentation'
      },
      'image': {
        'case_id': case_id,
{'fraction_non_alphanumeric': 0.1757396449704142, 'fraction_numerical': 0.011834319526627219, 'mean_word_length': 2.620985010706638, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5514907', 'n_tokens_mistral': 598, 'n_tokens_neox': 574, 'n_words': 96}