<commit_before># ----------------------------------------------------------------------------
# Copyright (c) 2016-2017, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ----------------------------------------------------------------------------
import qiime2.plugin
import importlib
from q2_types.feature_table import FeatureTable, Frequency
from q2_types.feature_data import FeatureData, Sequence
from q2_types.sample_data import SampleData
from q2_types.per_sample_sequences import (SequencesWithQuality,
                                           PairedEndSequencesWithQuality)

import q2_deblur

from q2_deblur._type import DeblurStats
from q2_deblur._format import DeblurStatsFmt, DeblurStatsDirFmt


plugin = qiime2.plugin.Plugin(
    name='deblur',
    version=q2_deblur.__version__,
    website='https://github.com/biocore/deblur',
    package='q2_deblur',
    user_support_text='https://github.com/biocore/deblur/issues',
    citation_text=("Deblur rapidly resolves single-nucleotide community "
                   "sequence patterns. <NAME>, <NAME>, Jose "
                   "<NAME>, <NAME>, <NAME>, "
                   "<NAME>, <NAME>, <NAME>, "
                   "<NAME>, <NAME>, <NAME>. mSystems "
                   "Mar 2017, 2 (2) doi:10.1128/mSystems.00191-16.")
)


plugin.register_formats(DeblurStatsFmt, DeblurStatsDirFmt)
plugin.register_semantic_types(DeblurStats)
plugin.register_semantic_type_to_format(DeblurStats,
                                        artifact_format=DeblurStatsDirFmt)


_parameter_descriptions = {<commit_msg>DOC: add plugin description (#38)<commit_after># ----------------------------------------------------------------------------
# Copyright (c) 2016-2017, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ----------------------------------------------------------------------------
import qiime2.plugin
import importlib
from q2_types.feature_table import FeatureTable, Frequency
from q2_types.feature_data import FeatureData, Sequence
from q2_types.sample_data import SampleData
from q2_types.per_sample_sequences import (SequencesWithQuality,
                                           PairedEndSequencesWithQuality)

import q2_deblur

from q2_deblur._type import DeblurStats
from q2_deblur._format import DeblurStatsFmt, DeblurStatsDirFmt


plugin = qiime2.plugin.Plugin(
    name='deblur',
    version=q2_deblur.__version__,
    website='https://github.com/biocore/deblur',
    package='q2_deblur',
    citation_text=("Deblur rapidly resolves single-nucleotide community "
                   "sequence patterns. <NAME>, <NAME>, Jose "
                   "<NAME>, <NAME>, <NAME>, "
                   "<NAME>, <NAME>, <NAME>, "
                   "<NAME>, <NAME>, <NAME>. mSystems "
                   "Mar 2017, 2 (2) doi:10.1128/mSystems.00191-16."),
    description=('This QIIME 2 plugin wraps the Deblur software for '
                 'performing sequence quality control.'),
    short_description='Plugin for sequence quality control with Deblur.'
)


plugin.register_formats(DeblurStatsFmt, DeblurStatsDirFmt)
plugin.register_semantic_types(DeblurStats)
plugin.register_semantic_type_to_format(DeblurStats,
                                        artifact_format=DeblurStatsDirFmt)


_parameter_descriptions = {
{'fraction_non_alphanumeric': 0.1688496583143508, 'fraction_numerical': 0.02306378132118451, 'mean_word_length': 2.27705223880597, 'pattern_counts': {'":': 0, '<': 25, '<?xml version=': 0, '>': 25, 'https://': 3, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 6, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2234470', 'n_tokens_mistral': 1051, 'n_tokens_neox': 923, 'n_words': 225}