<commit_before>#!/bin/bash

cd `pwd`

iprscan=/home/statonse/apps/iprscan/interproscan-5.14-53.0/interproscan.sh

$iprscan -i seqs.fas \
	 --goterms \
	 --iprlookup \
	 -b seqs_iprscan \
	 --pathways UniPathway,KEGG,MetaCyc,Reactome \
	 -f tsv,xml,gff3 > ipr.out

ipr_update_gff genome.all.gff ipr.out > genome.all.ipr.gff<commit_msg>add iprscan script<commit_after>#!/bin/bash

set -euo pipefail

cd `pwd`

iprscan=$HOME/apps/interproscan-5.16-55.0/interproscan.sh

time $iprscan -i $1 \
    --goterms \
    --iprlookup \
    -b canon_cds_pep_iprscan \
    --pathways UniPathway,KEGG,MetaCyc,Reactome \
    -f tsv,xml,gff3
{'fraction_non_alphanumeric': 0.1476725521669342, 'fraction_numerical': 0.024077046548956663, 'mean_word_length': 3.16, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 2}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5008773', 'n_tokens_mistral': 306, 'n_tokens_neox': 287, 'n_words': 40}