<commit_before>/*
 * Copyright (C) 2014 Google Inc.
 *
 * Licensed under the Apache License, Version 2.0 (the "License"); you may not
 * use this file except in compliance with the License. You may obtain a copy of
 * the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
 * WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
 * License for the specific language governing permissions and limitations under
 * the License.
 */
package com.google.cloud.genomics.dataflow.readers;

import com.google.api.services.genomics.Genomics;
import com.google.api.services.genomics.model.SearchVariantsRequest;
import com.google.api.services.genomics.model.Variant;
import com.google.cloud.genomics.utils.GenomicsFactory;
import com.google.cloud.genomics.utils.Paginator;
import com.google.common.collect.Iterables;

import java.io.IOException;
import java.util.logging.Logger;

public class VariantReader extends GenomicsApiReader<SearchVariantsRequest, Variant> {
  private static final Logger LOG = Logger.getLogger(VariantReader.class.getName());

  /**
   * Create a VariantReader using a auth and fields parameter. All fields not specified under 
   * readFields will not be returned in the API response.
   * 
   * @param auth Auth class containing credentials.<commit_msg>Removed an unused import.<commit_after>/*
 * Copyright (C) 2014 Google Inc.
 *
 * Licensed under the Apache License, Version 2.0 (the "License"); you may not
 * use this file except in compliance with the License. You may obtain a copy of
 * the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
 * WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
 * License for the specific language governing permissions and limitations under
 * the License.
 */
package com.google.cloud.genomics.dataflow.readers;

import com.google.api.services.genomics.Genomics;
import com.google.api.services.genomics.model.SearchVariantsRequest;
import com.google.api.services.genomics.model.Variant;
import com.google.cloud.genomics.utils.GenomicsFactory;
import com.google.cloud.genomics.utils.Paginator;

import java.io.IOException;
import java.util.logging.Logger;

public class VariantReader extends GenomicsApiReader<SearchVariantsRequest, Variant> {
  private static final Logger LOG = Logger.getLogger(VariantReader.class.getName());

  /**
   * Create a VariantReader using a auth and fields parameter. All fields not specified under 
   * readFields will not be returned in the API response.
   * 
   * @param auth Auth class containing credentials.
{'fraction_non_alphanumeric': 0.08292682926829269, 'fraction_numerical': 0.005574912891986063, 'mean_word_length': 4.489483747609943, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 2, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4629569', 'n_tokens_mistral': 785, 'n_tokens_neox': 752, 'n_words': 286}