<commit_before>Stefan Custom List
ID   Deamidation
TG   N or Q
PP   Anywhere.
MT   Mod
CF   H-1 N-1 O1
//
ID   Amidation
TG   X
PP   C-terminal.
MT   ProteinTermMod
CF   H1 N1 O-1
//
ID   Ammonia loss
TG   Q or C
PP   Peptide N-terminal.
MT   PeptideTermMod
CF   H-3 N-1
//
ID   Ammonia loss
TG   N
PP   Anywhere.
MT   Mod
CF   H-3 N-1
//
ID   Sodium
TG   D or E
PP   Anywhere.
MT   Metal
CF   H-1 Na1
//
ID   Dioxidation
TG   W or P
PP   Anywhere.
MT   Mod
CF   O2
//
ID   Oxidation
TG   Y or W or P or F or D or E or V or H
PP   Anywhere.
MT   Mod
CF   O1
//
ID   Carbamidomethyl
TG   K or H or D or E or S or T or Y
PP   Anywhere.
MT   Mod
CF   H3 C2 N1 O1
//
ID   Carbamidomethyl of peptide N term
TG   X
PP   Peptide N-terminal.
MT   PeptideTermMod
CF   H3 C2 N1 O1
//
ID   Carboxymethyl
TG   C
PP   Anywhere.
MT   Mod
CF   H2 C2 O2
//
ID   Carboxylation
TG   K or D or E
PP   Anywhere.
MT   Mod
CF   C1 O2
//
ID   Phospho
TG   S or T or Y
PP   Anywhere.
NL   H0 or H3 O4 P1
MT   Mod
CF   H1 O3 P1
//
ID   Acetyl
TG   X
PP   N-terminal.
MT   ProteinTermMod
CF   H2 C2 O1
//
ID   Acetyl
TG   S or K or C or T
PP   Anywhere.
MT   Mod
CF   H2 C2 O1
//
ID   Acetald+26
TG   X
PP   Peptide N-terminal.
MT   PeptideTermMod
CF   H2 C2
//
ID   Acetylation+Methionine
TG   mX
PP   N-terminal.
NL   C7 H11 N1 O2 S or H0
MT   ProteinTermMod
CF   C7 H11 N1 O2 S
//
ID   Carboxymethyl+Methionine
TG   mX
PP   N-terminal.
MT   ProteinTermMod
CF   C7 H11 N1 O3 S1
//
ID   Lysine not cleaved at C-term
TG   Xk
PP   Peptide C-terminal.<commit_msg>Update Mods.txt<commit_after>Stefan Custom List
ID   Deamidation
TG   N or Q
PP   Anywhere.
MT   Mod
CF   H-1 N-1 O1
//
ID   Amidation
TG   X
PP   C-terminal.
MT   ProteinTermMod
CF   H1 N1 O-1
//
ID   Ammonia loss
TG   Q or C
PP   Peptide N-terminal.
MT   PeptideTermMod
CF   H-3 N-1
//
ID   Ammonia loss
TG   N
PP   Anywhere.
MT   Mod
CF   H-3 N-1
//
ID   Sodium
TG   D or E
PP   Anywhere.
MT   Metal
CF   H-1 Na1
//
ID   Dioxidation
TG   W or P
PP   Anywhere.
MT   Mod
CF   O2
//
ID   Oxidation
TG   Y or W or P or F or D or E or V or H
PP   Anywhere.
MT   Mod
CF   O1
//
ID   Carbamidomethyl
TG   K or H or D or E or S or T or Y or C
PP   Anywhere.
MT   Mod
CF   H3 C2 N1 O1
//
ID   Carbamidomethyl of peptide N term
TG   X
PP   Peptide N-terminal.
MT   PeptideTermMod
CF   H3 C2 N1 O1
//
ID   Carboxymethyl
TG   C
PP   Anywhere.
MT   Mod
CF   H2 C2 O2
//
ID   Carboxylation
TG   K or D or E
PP   Anywhere.
MT   Mod
CF   C1 O2
//
ID   Phospho
TG   S or T or Y
PP   Anywhere.
NL   H0 or H3 O4 P1
MT   Mod
CF   H1 O3 P1
//
ID   Acetyl
TG   X
PP   N-terminal.
MT   ProteinTermMod
CF   H2 C2 O1
//
ID   Acetyl
TG   S or K or C or T
PP   Anywhere.
MT   Mod
CF   H2 C2 O1
//
ID   Acetald+26
TG   X
PP   Peptide N-terminal.
MT   PeptideTermMod
CF   H2 C2
//
ID   Acetald+26
TG   H or K
PP   Anywhere.
MT   Mod
CF   H2 C2
//
ID   Acetylation+Methionine
TG   mX
PP   N-terminal.
NL   C7 H11 N1 O2 S or H0
MT   ProteinTermMod
CF   C7 H11 N1 O2 S
//
ID   Carboxymethyl+Methionine
TG   mX
PP   N-terminal.
MT   ProteinTermMod
CF   C7 H11 N1 O3 S1
//
ID   Lysine not cleaved at C-term
TG   Xk
PP   Peptide C-terminal.
{'fraction_non_alphanumeric': 0.04931594018453707, 'fraction_numerical': 0.0400890868596882, 'mean_word_length': 1.7724867724867726, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1747520', 'n_tokens_mistral': 1543, 'n_tokens_neox': 1422, 'n_words': 587}