<commit_before>class Dida < Formula
  desc "Distributed Indexing Dispatched Alignment"
  homepage "http://www.bcgsc.ca/platform/bioinfo/software/dida"
  # doi "10.1371/journal.pone.0126409"
  # tag "bioinformatics"

  url "http://www.bcgsc.ca/platform/bioinfo/software/dida/releases/1.0.1/dida-1.0.1.tar.gz"
  sha256 "251d8b6d40d061eb7a7c49737a1ce41592b89a6c8647a791fb9d64ff26afd7bd"
  revision 1

  bottle do
    cellar :any
    sha256 "ed1693e77dd976f0949bb554a3bc226881dcbccb20cd1b6fb696ab3892e26248" => :el_capitan
    sha256 "65df860ef7d86f41538d7ab1ebce3978a578a6b552ae09fd28f058b0d869c413" => :yosemite
    sha256 "2fbf1a21752ea89ddf730f260143df9cdd5b6d7f9909a9ed156b5863c77aa4af" => :mavericks
    sha256 "d6ad8834fb82223b18282eb70997eded987eba7c34c004a4d2f7932000f57fce" => :x86_64_linux
  end

  # Fix error: DIDA must be compiled with a C++ compiler that supports OpenMP threading.
  needs :openmp

  # Fix error: DIDA must be compiled with MPI support.
  depends_on :mpi

  def install
    system "./configure",
      "--disable-debug",
      "--disable-dependency-tracking",
      "--disable-silent-rules",
      "--prefix=#{prefix}"
    system "make", "install"
  end

  test do
    system "#{bin}/dida-wrapper", "--version"
  end
end<commit_msg>dida: update 1.0.1_1 bottle.<commit_after>class Dida < Formula
  desc "Distributed Indexing Dispatched Alignment"
  homepage "http://www.bcgsc.ca/platform/bioinfo/software/dida"
  # doi "10.1371/journal.pone.0126409"
  # tag "bioinformatics"

  url "http://www.bcgsc.ca/platform/bioinfo/software/dida/releases/1.0.1/dida-1.0.1.tar.gz"
  sha256 "251d8b6d40d061eb7a7c49737a1ce41592b89a6c8647a791fb9d64ff26afd7bd"
  revision 1

  bottle do
    cellar :any
    sha256 "38e35d907cb2841dc82b94de93d5323c3b8136d7e0ff4a0e97e2c96c46529232" => :el_capitan
    sha256 "6d221aa3bbb2d3886906b75d021dae0534f40de5ee6173488c0aa5b70e411396" => :yosemite
    sha256 "09d21a097b6b1caa7fbb33b69c09500115f8d5c49a47da810ce64b972593eebb" => :mavericks
  end

  # Fix error: DIDA must be compiled with a C++ compiler that supports OpenMP threading.
  needs :openmp

  # Fix error: DIDA must be compiled with MPI support.
  depends_on :mpi

  def install
    system "./configure",
      "--disable-debug",
      "--disable-dependency-tracking",
      "--disable-silent-rules",
      "--prefix=#{prefix}"
    system "make", "install"
  end

  test do
    system "#{bin}/dida-wrapper", "--version"
  end
end
{'fraction_non_alphanumeric': 0.1069672131147541, 'fraction_numerical': 0.17745901639344264, 'mean_word_length': 4.138947368421053, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 10, 'https://': 0, 'lorem ipsum': 0, 'www.': 4, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2504963', 'n_tokens_mistral': 1245, 'n_tokens_neox': 998, 'n_words': 165}