<commit_before># Delly Dockerfile
#
# Version 0.0.5
# build with: sudo docker build --rm --no-cache -t delly - < Dockerfile
# run with: sudo docker run -i -t delly /bin/bash

# use the ubuntu base image
FROM ubuntu

MAINTAINER <NAME> <EMAIL>

# update package repository
RUN apt-get update

# install g++, git, zlib, cmake, ant
RUN apt-get install -y build-essential g++ git cmake zlib1g-dev ant libbz2-dev

# set environment
ENV BOOST_ROOT /usr

# install delly
RUN git clone --recursive https://github.com/tobiasrausch/delly.git
RUN cd delly/ ; make all<commit_msg>simplified dockerfile<commit_after># Delly Dockerfile
#
# Version 0.0.5
# build with: sudo docker build --rm --no-cache -t delly - < Dockerfile
# run with: sudo docker run -i -t delly /bin/bash

# use the ubuntu base image
FROM ubuntu

MAINTAINER <NAME> <EMAIL>

# update package repository
RUN apt-get update

# install g++, git, zlib, cmake, ant
RUN apt-get install -y build-essential g++ git cmake zlib1g-dev ant libbz2-dev libboost-date-time-dev libboost-program-options-dev libboost-system-dev libboost-filesystem-dev libboost-iostreams-dev

# set environment
ENV BOOST_ROOT /usr
ENV SEQTK_ROOT /htslib

# install delly
RUN git clone https://github.com/samtools/htslib.git
RUN cd htslib && make && make lib-static && cd ..
RUN git clone https://github.com/tobiasrausch/delly.git
RUN cd delly/ && touch .htslib .boost && make src/delly && make src/stats && cd ..
{'fraction_non_alphanumeric': 0.11025819958129798, 'fraction_numerical': 0.006978367062107467, 'mean_word_length': 3.78, 'pattern_counts': {'":': 0, '<': 9, '<?xml version=': 0, '>': 7, 'https://': 3, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '184323', 'n_tokens_mistral': 520, 'n_tokens_neox': 485, 'n_words': 172}