<commit_before>#!/bin/sh

#. ~/src/ensembl-efg/scripts/.efg
x=50

while [ $x -lt 51 ]
do


echo "Importing run $x"

ln -s /nfs/acari/nj1/data/efg/input/nimblegen/Stunnenberg_all_OID_1963 /nfs/acari/nj1/data/efg/input/nimblegen/${x}_Stunnenberg_all_OID_1963


$EFG_SRC/scripts/parse_and_import.pl\
	-name ${x}_Stunnenberg_all_OID_1963\
	-format tiled\
	-location Hinxton\
	-contact <EMAIL>\
	-species homo_sapiens\
	-fasta\
	-port 3306\
	-host ens-genomics1\
	-dbname test_homo_sapiens_funcgen_41_36c\
	-array_set\
	-array_name "2005-05-10_HG17Tiling_Set"\
	-group efg\
	-data_version 41_36c\
	-verbose 2\
	-pass ensembl\
	-recover

echo "return val is $?"

x=`expr $x + 1`

done<commit_msg>*** empty log message ***<commit_after>#!/bin/sh

#. ~/src/ensembl-efg/scripts/.efg
#x=50

#while [ $x -lt 51 ]
#do


#echo "Importing run $x"

#ln -s /nfs/acari/nj1/data/efg/input/nimblegen/Stunnenberg_all_OID_1963 /nfs/acari/nj1/data/efg/input/nimblegen/${x}_Stunnenberg_all_OID_1963


$EFG_SRC/scripts/parse_and_import.pl\
	-name ${x}_Stunnenberg_all_OID_1963\
	-format tiled\
	-location Hinxton\
	-contact <EMAIL>\
	-species homo_sapiens\
	-fasta\
	-port 3306\
	-host ens-genomics1\
	-dbname test_homo_sapiens_funcgen_41_36c\
	-array_set\
	-array_name "2005-05-10_HG17Tiling_Set"\
	-group efg\
	-data_version 41_36c\
	-verbose\
	-tee\
	-pass $PASS\
	-recover

#echo "return val is $?"

#x=`expr $x + 1`

#done
{'fraction_non_alphanumeric': 0.15324305060584462, 'fraction_numerical': 0.06058446186742694, 'mean_word_length': 3.588235294117647, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 5, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7517286', 'n_tokens_mistral': 752, 'n_tokens_neox': 668, 'n_words': 111}