<commit_before>#DO NOT EDIT THIS FILE TO CHANGE SETTINGS. THESE ARE ONLY USED TO PRE-POPULATE THE DEFAULT VALUES.
#CHANGE THESE VALUES THROUGH THE ADMIN PAGES WHILST RUNNING SEEK.
require 'seek/config'
require 'seek/seek_render_override'

SEEK::Application.configure do
  #Main settings

  #NOTE: Seek::Config.public_seek_enabled is still needed? it is always true in SEEK via resetting true even it is false here
  Seek::Config.fixed :public_seek_enabled,true

  Seek::Config.fixed :sycamore_enabled,true
  Seek::Config.default :events_enabled,true
  Seek::Config.default :jerm_enabled,false
  Seek::Config.default :email_enabled,false
  Seek::Config.default :smtp, {:address => '', :port => '25', :domain => '', :authentication => :plain, :user_name => '', :password => '', :enable_starttls_auto=>false}
  Seek::Config.default :noreply_sender, '<EMAIL>'
  Seek::Config.default :solr_enabled,false
  Seek::Config.default :jws_enabled, true
  Seek::Config.default :jws_online_root,"https://jws.sysmo-db.org/"
  Seek::Config.default :sabiork_ws_base_url, "http://sabiork.h-its.org/sabioRestWebServices/"
  Seek::Config.default :exception_notification_enabled,false
  Seek::Config.default :exception_notification_recipients,""
  Seek::Config.default :hide_details_enabled,false
  Seek::Config.default :activation_required_enabled,false
  Seek::Config.default :google_analytics_enabled, false
  Seek::Config.default :google_analytics_tracker_id, '000-000'
  Seek::Config.default :piwik_analytics_enabled, false
  Seek::Config.default :piwik_analytics_id_site, 1
  Seek::Config.default :piwik_analytics_url, 'localhost/piwik/'
  Seek::Config.default :bioportal_api_key,''
  Seek::Config.default :project_news_enabled,false
  Seek::Config.default :project_news_feed_urls,''
  Seek::Config.default :project_news_number_of_entries,10
  Seek::Config.default :community_news_enabled,false
  Seek::Config.default :community_news_feed_urls,''
  Seek::Config.default :community_news_number_of_entries,10
  Seek::Config.default :home_description, 'You can configure the text that goes here within the Admin pages: Site Configuration->Home page settings.'
  Seek::Config.fixed :tagline_prefix, 'Find, share and exchange <b>Data</b>, <b>Models</b> and <b>Processes</b> within the'
  Seek::Config.fixed :publish_button_enabled, true
  Seek::Config.fixed :auth_lookup_enabled,true
  Seek::Config.fixed :sample_parser_enabled,true
  Seek::Config.fixed :external_search_enabled, true
  Seek::Config.fixed :project_browser_enabled,true
  Seek::Config.fixed :experimental_features_enabled,true
  Seek::Config.default :pdf_conversion_enabled,true
  Seek::Config.default :delete_asset_version_enabled, false
  Seek::Config.default :forum_enabled,false
  Seek::Config.fixed :filestore_path,"filestore"
  Seek::Config.fixed :biosamples_enabled, true
  Seek::Config.fixed :modelling_analysis_enabled,true
  Seek::Config.fixed :organisms_enabled,true
  Seek::Config.fixed :models_enabled,true
  Seek::Config.fixed :guide_box_enabled,true
  Seek::Config.fixed :treatments_enabled,true
  Seek::Config.fixed :factors_studied_enabled,true
  Seek::Config.fixed :experimental_conditions_enabled,true
  Seek::Config.fixed :tagging_enabled, true
  Seek::Config.fixed :workflows_enabled,true
  Seek::Config.fixed :authorization_checks_enabled, true
  Seek::Config.fixed :documentation_enabled,true
  Seek::Config.fixed :assay_type_ontology_file, "JERM-RDFXML.owl"
  Seek::Config.fixed :technology_type_ontology_file, "JERM-RDFXML.owl"
  Seek::Config.fixed :modelling_analysis_type_ontology_file, "JERM-RDFXML.owl"
  Seek::Config.fixed :assay_type_base_uri,"http://www.mygrid.org.uk/ontology/JERMOntology#Experimental_assay_type"
  Seek::Config.fixed :technology_type_base_uri,"http://www.mygrid.org.uk/ontology/JERMOntology#Technology_type"
  Seek::Config.fixed :modelling_analysis_type_base_uri,"http://www.mygrid.org.uk/ontology/JERMOntology#Model_analysis_type"
  Seek::Config.fixed :profile_select_by_default,true
  Seek::Config.fixed :programmes_enabled, true
  Seek::Config.fixed :project_hierarchy_enabled, true

  Seek::Config.fixed :header_tagline_text_enabled, true

#time in minutes that the feeds on the front page are cached for
  Seek::Config.fixed :home_feeds_cache_timeout,2

# Branding
  Seek::Config.default :project_name,'SysMO'
  Seek::Config.default :project_type,'Consortium'
  Seek::Config.default :project_link,'http://www.sysmo.net'

  Seek::Config.default :application_name,"SEEK"
  Seek::Config.default :dm_project_name,"SysMO-DB"
  Seek::Config.default :dm_project_link,"http://www.sysmo-db.org"
  Seek::Config.default :header_image_enabled,true
  Seek::Config.default :header_image_title, "SysMO-DB"
  Seek::Config.default :header_image_link,"http://www.sysmo-db.org"
  Seek::Config.default :header_image,'sysmo-db-logo_smaller.png'<commit_msg>disable header tag line<commit_after>#DO NOT EDIT THIS FILE TO CHANGE SETTINGS. THESE ARE ONLY USED TO PRE-POPULATE THE DEFAULT VALUES.
#CHANGE THESE VALUES THROUGH THE ADMIN PAGES WHILST RUNNING SEEK.
require 'seek/config'
require 'seek/seek_render_override'

SEEK::Application.configure do
  #Main settings

  #NOTE: Seek::Config.public_seek_enabled is still needed? it is always true in SEEK via resetting true even it is false here
  Seek::Config.fixed :public_seek_enabled,true

  Seek::Config.fixed :sycamore_enabled,true
  Seek::Config.default :events_enabled,true
  Seek::Config.default :jerm_enabled,false
  Seek::Config.default :email_enabled,false
  Seek::Config.default :smtp, {:address => '', :port => '25', :domain => '', :authentication => :plain, :user_name => '', :password => '', :enable_starttls_auto=>false}
  Seek::Config.default :noreply_sender, '<EMAIL>'
  Seek::Config.default :solr_enabled,false
  Seek::Config.default :jws_enabled, true
  Seek::Config.default :jws_online_root,"https://jws.sysmo-db.org/"
  Seek::Config.default :sabiork_ws_base_url, "http://sabiork.h-its.org/sabioRestWebServices/"
  Seek::Config.default :exception_notification_enabled,false
  Seek::Config.default :exception_notification_recipients,""
  Seek::Config.default :hide_details_enabled,false
  Seek::Config.default :activation_required_enabled,false
  Seek::Config.default :google_analytics_enabled, false
  Seek::Config.default :google_analytics_tracker_id, '000-000'
  Seek::Config.default :piwik_analytics_enabled, false
  Seek::Config.default :piwik_analytics_id_site, 1
  Seek::Config.default :piwik_analytics_url, 'localhost/piwik/'
  Seek::Config.default :bioportal_api_key,''
  Seek::Config.default :project_news_enabled,false
  Seek::Config.default :project_news_feed_urls,''
  Seek::Config.default :project_news_number_of_entries,10
  Seek::Config.default :community_news_enabled,false
  Seek::Config.default :community_news_feed_urls,''
  Seek::Config.default :community_news_number_of_entries,10
  Seek::Config.default :home_description, 'You can configure the text that goes here within the Admin pages: Site Configuration->Home page settings.'
  Seek::Config.fixed :tagline_prefix, 'Find, share and exchange <b>Data</b>, <b>Models</b> and <b>Processes</b> within the'
  Seek::Config.fixed :publish_button_enabled, true
  Seek::Config.fixed :auth_lookup_enabled,true
  Seek::Config.fixed :sample_parser_enabled,true
  Seek::Config.fixed :external_search_enabled, true
  Seek::Config.fixed :project_browser_enabled,true
  Seek::Config.fixed :experimental_features_enabled,true
  Seek::Config.default :pdf_conversion_enabled,true
  Seek::Config.default :delete_asset_version_enabled, false
  Seek::Config.default :forum_enabled,false
  Seek::Config.fixed :filestore_path,"filestore"
  Seek::Config.fixed :biosamples_enabled, true
  Seek::Config.fixed :modelling_analysis_enabled,true
  Seek::Config.fixed :organisms_enabled,true
  Seek::Config.fixed :models_enabled,true
  Seek::Config.fixed :guide_box_enabled,true
  Seek::Config.fixed :treatments_enabled,true
  Seek::Config.fixed :factors_studied_enabled,true
  Seek::Config.fixed :experimental_conditions_enabled,true
  Seek::Config.fixed :tagging_enabled, true
  Seek::Config.fixed :workflows_enabled,true
  Seek::Config.fixed :authorization_checks_enabled, true
  Seek::Config.fixed :documentation_enabled,true
  Seek::Config.fixed :assay_type_ontology_file, "JERM-RDFXML.owl"
  Seek::Config.fixed :technology_type_ontology_file, "JERM-RDFXML.owl"
  Seek::Config.fixed :modelling_analysis_type_ontology_file, "JERM-RDFXML.owl"
  Seek::Config.fixed :assay_type_base_uri,"http://www.mygrid.org.uk/ontology/JERMOntology#Experimental_assay_type"
  Seek::Config.fixed :technology_type_base_uri,"http://www.mygrid.org.uk/ontology/JERMOntology#Technology_type"
  Seek::Config.fixed :modelling_analysis_type_base_uri,"http://www.mygrid.org.uk/ontology/JERMOntology#Model_analysis_type"
  Seek::Config.fixed :profile_select_by_default,true
  Seek::Config.fixed :programmes_enabled, true
  Seek::Config.fixed :project_hierarchy_enabled, true

  Seek::Config.fixed :header_tagline_text_enabled, false

#time in minutes that the feeds on the front page are cached for
  Seek::Config.fixed :home_feeds_cache_timeout,2

# Branding
  Seek::Config.default :project_name,'SysMO'
  Seek::Config.default :project_type,'Consortium'
  Seek::Config.default :project_link,'http://www.sysmo.net'

  Seek::Config.default :application_name,"SEEK"
  Seek::Config.default :dm_project_name,"SysMO-DB"
  Seek::Config.default :dm_project_link,"http://www.sysmo-db.org"
  Seek::Config.default :header_image_enabled,true
  Seek::Config.default :header_image_title, "SysMO-DB"
  Seek::Config.default :header_image_link,"http://www.sysmo-db.org"
  Seek::Config.default :header_image,'sysmo-db-logo_smaller.png'
{'fraction_non_alphanumeric': 0.11915332989158492, 'fraction_numerical': 0.0028910686628807435, 'mean_word_length': 7.321305841924398, 'pattern_counts': {'":': 0, '<': 17, '<?xml version=': 0, '>': 33, 'https://': 2, 'lorem ipsum': 0, 'www.': 12, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5778638', 'n_tokens_mistral': 3368, 'n_tokens_neox': 3265, 'n_words': 538}