<commit_before><?xml version="1.0" encoding="utf-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>com.novartis.opensource</groupId>
	<artifactId>YADA</artifactId>
	<version>9.0.0-SNAPSHOT</version>
	<name>YADA</name>
	<url>http://github.com/Novartis/YADA</url>
	<description>YADA (Yet Another Data Abstraction) Thin Server Framework</description>
	<inceptionYear>2016</inceptionYear>
	<packaging>pom</packaging>
	<licenses>
		<license>
			<name>Apache License, Version 2.0</name>
			<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
		</license>
	</licenses>
	<organization>
		<name>Novartis Institutes for BioMedical Research, Inc</name>
		<url>http://opensource.nibr.com</url>
	</organization>
	<distributionManagement>
		<site>
			<id>yada.site</id>
			<name>YADA site</name>
			<url>${distribution.site.url}</url>
		</site>
		<snapshotRepository>
			<id>ossrh</id>
			<url>https://oss.sonatype.org/content/repositories/snapshots</url>
		</snapshotRepository>
		<repository>
			<id>ossrh</id>
			<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
		</repository>
	</distributionManagement>
	<developers>
		<developer>
			<name><NAME></name>
			<email><EMAIL></email>
			<organization>Novartis Institutes for BioMedical Research</organization>
			<organizationUrl>http://opensource.nibr.com</organizationUrl>
		</developer>
	</developers>
	<scm>
		<connection>scm:git:ssh:git<EMAIL>:Novartis/YADA.git</connection>
		<developerConnection>scm:git:ssh://git@github.com/Novartis/YADA.git</developerConnection>
		<url>scm:git:ssh://github.com/Novartis/YADA</url>
		<tag>HEAD</tag>
	</scm>
	<properties>
		<display.version>${project.version}</display.version>
		<projectVersion>${project.version}</projectVersion>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<main.basedir>${project.basedir}</main.basedir>
	</properties>
	<modules>
		<module>yada-api</module>
		<module>yada-war</module>
	</modules>
	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-release-plugin</artifactId>
				<version>2.5</version>
				<configuration>
					<useReleaseProfile>false</useReleaseProfile>
					<autoVersionSubmodules>true</autoVersionSubmodules>
					<tagNameFormat>@{project.version}</tagNameFormat>
					<goals>deploy</goals>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.sonatype.plugins</groupId>
				<artifactId>nexus-staging-maven-plugin</artifactId>
				<version>1.6.6</version>
				<extensions>true</extensions>
				<configuration>
					<serverId>ossrh</serverId>
					<nexusUrl>https://oss.sonatype.org/</nexusUrl>
					<autoReleaseAfterClose>true</autoReleaseAfterClose>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-gpg-plugin</artifactId>
				<version>1.5</version>
				<executions>
					<execution>
						<id>sign-artifacts</id>
						<phase>verify</phase>
						<goals>
							<goal>sign</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>com.mycila</groupId>
				<artifactId>license-maven-plugin</artifactId>
				<version>2.11</version>
				<configuration>
					<header>${main.basedir}/src/main/resources/license.txt</header>
					<useDefaultExcludes>true</useDefaultExcludes>
					<properties>
						<year>${project.inceptionYear}</year>
					</properties>
					<includes>
						<include>**/*.java</include>
						<include>**/*.xml</include>
						<include>**/*.xsl</include>
						<include>**/*.pl</include>
						<include>**/*.js</include>
						<include>**/*.html</include>
						<include>**/*.css</include>
						<include>**/*.jsp</include>
					</includes>
					<excludes>
						<exclude>pom.xml</exclude>
						<exclude>target/**</exclude>
						<exclude>src/site/**</exclude>
						<exclude>src/test/resources/conf/**</exclude>
						<exclude>src/test/resources/test/**</exclude>
						<exclude>src/main/resources/conf/**</exclude>
						<exclude>src/main/webapp/META-INF/**</exclude>
						<exclude>src/main/webapp/WEB-INF/**</exclude>
						<exclude>src/main/webapp/yada-admin/lib/**</exclude>
						<exclude>yada-api/src/main/resaurces/utils/r.js</exclude>
						<!-- excluded due to requirement for line feed at end of license -->
						<exclude>yada-war/src/main/webapp/yada.jsp</exclude>
					</excludes>
				</configuration>
				<executions>
					<execution>
						<goals>
							<goal>check</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-site-plugin</artifactId>
				<version>3.3</version>
				<dependencies>
					<dependency>
						<groupId>org.apache.maven.doxia</groupId>
						<artifactId>doxia-module-markdown</artifactId>
						<version>1.4</version>
					</dependency>
					<dependency>
						<groupId>org.apache.maven.wagon</groupId>
						<artifactId>wagon-ssh</artifactId>
						<version>1.0-beta-7</version>
					</dependency>
				</dependencies>
			</plugin>
			<plugin>
				<groupId>com.github.jeluard</groupId>
				<artifactId>plantuml-maven-plugin</artifactId>
				<version>1.1</version>
				<configuration>
					<sourceFiles>
						<directory>${basedir}</directory>
						<includes>
							<include>src/site/uml/*.uml</include>
						</includes>
					</sourceFiles>
					<outputDirectory>${basedir}/src/site/resources/images</outputDirectory>
				</configuration>
				<executions>
					<execution>
						<id>uml</id>
						<phase>pre-site</phase>
						<goals>
							<goal>generate</goal>
						</goals>
					</execution>
				</executions>
				<dependencies>
					<dependency>
						<groupId>net.sourceforge.plantuml</groupId>
						<artifactId>plantuml</artifactId>
						<version>8029</version>
					</dependency>
				</dependencies>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-antrun-plugin</artifactId>
				<version>1.6</version>
				<executions>
					<execution>
						<id>stub-assembly</id>
						<phase>pre-site</phase>
						<goals>
							<goal>run</goal>
						</goals>
						<configuration>
							<target>
								<!-- there are no longer any github source tree changes in this step -->
								<copy overwrite="true" file="readme.md" tofile="src/site/markdown/index.md" />

								<!-- update image refs in index -->
								<replaceregexp byline="true">
									<regexp pattern="(\!\[.+\]\()src/site/resources/(images/.+\))" />
									<substitution expression="\1\2" />
									<fileset dir="${basedir}/src/site/markdown/">
										<include name="index.md" />
									</fileset>
								</replaceregexp>

								<!-- update pure html image refs in index -->
								<replaceregexp byline="true">
									<regexp pattern="(&lt;img src=&quot;)src/site/resources/(images/.+)" />
									<substitution expression="\1\2" />
									<fileset dir="${basedir}/src/site/markdown/">
										<include name="index.md" />
									</fileset>
								</replaceregexp>
							</target>
						</configuration>
					</execution>
					<execution>
						<id>html-it</id>
						<phase>post-site</phase>
						<goals>
							<goal>run</goal>
						</goals>
						<configuration>
							<target>
								<!-- SITE -->

								<!-- convert .md hrefs into .html -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="((href=&quot;(src/site/markdown/)?(\w+)\.md(#\w+)?&quot;)+)" />
									<substitution expression="href=&quot;\4.html\5&quot;" />
									<fileset dir="${basedir}/target/">
										<include name="site/*.html" />
									</fileset>
								</replaceregexp>

								<!-- add link for github docs to site -->
								<replaceregexp file="${basedir}/target/site/index.html">
									<regexp pattern="(&lt;div id=&quot;bodyColumn&quot;\s+class=&quot;span9&quot;\s*&gt;)" />
									<substitution expression="\1&lt;p&gt;For the most recent updates to documentation, see &lt;a href=&quot;http://github.com/Novartis/YADA&quot;&gt;https://github.com/Novartis/YADA&lt;/a&gt;.&lt;/p&gt;" />
								</replaceregexp>

								<!-- update image refs in html files -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="(src=&quot;)\.\./resources/(images/.+)" />
									<substitution expression="\1\2" />
									<fileset dir="${basedir}/target/">
										<include name="site/*.html" />
									</fileset>
								</replaceregexp>

								<!-- mod copyright in html files -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="All Rights Reserved." />
									<substitution expression="" />
									<fileset dir="${basedir}/target/">
										<include name="site/*.html" />
									</fileset>
								</replaceregexp>

								<!-- add float to icon -->
								<replaceregexp>
									<regexp pattern="(&lt;img src=&quot;images/blox250.png.+)" />
									<substitution expression="&lt;div style=&quot;float:right;margin-top:-43px;&quot;&gt;\1&lt;/div&gt;" />
									<fileset dir="${basedir}/target/">
										<include name="site/*.html" />
									</fileset>
								</replaceregexp>

								<!-- STAGE -->

								<!-- convert .md hrefs into .html -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="((href=&quot;(src/site/markdown/)?(\w+)\.md(#\w+)?&quot;)+)" />
									<substitution expression="href=&quot;\4.html\5&quot;" />
									<fileset dir="${basedir}/target/">
										<include name="${stagingDirectory}/*.html" />
									</fileset>
								</replaceregexp>

								<!-- insert YAML into index.html STAGING ONLY. staging goes to svn 
									for opensource.nibr.com site gets deployed internally -->
								<replaceregexp file="${stagingDirectory}/index.html">
									<regexp pattern="(&lt;body\s.+&gt;)" />
									<substitution expression="\1--- name: YADA abbreviation: YADA projectName: YADA launched: 2015-11-01 icon: images/blox250.png summary: A universal remote control for data. description: | Access any data, at any source, in any format, from any environment, using just a URL, with just one-time configuration. Get data from multiple sources, in different formats, merge the results into one with uniform column names, on-the-fly, using one URL. **YADA** exists to simplify data access and eliminate work. **YADA** is a lightweight framework for data retrieval, searching, storage, and manipulation. **YADA** is an instant web service for your data. **YADA** is a tool to enable efficient development of interfaces and data-processing pipelines. **YADA** is an implementation of [Thin Server Architecture](http://bit.ly/1dhuiRY). **YADA** is an acronym for &quot;Yet Another Data Abstraction.&quot; Its [raisons d'être](http://bit.ly/1SHuiAd) are to enable efficient, non-redundant development of data-dependent applications and utilities, data source querying, data analysis, processing pipelines, extract, transform, and load (ETL) processes, etc. **YADA** does all this while preserving total decoupling between data access and other aspects of application architecture such as user interface. ---" />
								</replaceregexp>

								<!-- add link for github docs stage -->
								<replaceregexp file="${stagingDirectory}/index.html">
									<regexp pattern="(&lt;div id=&quot;bodyColumn&quot;\s+class=&quot;span9&quot;\s*&gt;)" />
									<substitution expression="\1&lt;p&gt;For the most recent updates to documentation, see &lt;a href=&quot;http://github.com/Novartis/YADA&quot;&gt;https://github.com/Novartis/YADA&lt;/a&gt;.&lt;/p&gt;" />
								</replaceregexp>

								<!-- update image refs in html files -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="(src=&quot;)\.\./resources/(images/.+)" />
									<substitution expression="\1\2" />
									<fileset dir="${basedir}/target/">
										<include name="${stagingDirectory}/*.html" />
									</fileset>
								</replaceregexp>

								<!-- mod copyright in html files -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="All Rights Reserved." />
									<substitution expression="" />
									<fileset dir="${basedir}/target/">
										<include name="${stagingDirectory}/*.html" />
									</fileset>
								</replaceregexp>

								<!-- add float to icon -->
								<replaceregexp>
									<regexp pattern="(&lt;img src=&quot;images/blox250.png.+)" />
									<substitution expression="&lt;div style=&quot;float:right;margin-top:-43px;&quot;&gt;\1&lt;/div&gt;" />
									<fileset dir="${basedir}/target/">
										<include name="${stagingDirectory}/*.html" />
									</fileset>
								</replaceregexp>

							</target>
						</configuration>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>
	<reporting>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-project-info-reports-plugin</artifactId>
				<version>2.7</version>
				<configuration>
					<dependencyDetailsEnabled>false</dependencyDetailsEnabled>
					<dependencyLocationsEnabled>false</dependencyLocationsEnabled>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-report-plugin</artifactId>
				<version>2.16</version>
				<reportSets>
					<!-- <reportSet> defines unit test reports in the modules <id>unit-tests</id> 
						<reports> <report>report</report> </reports> </reportSet> -->

					<reportSet>
						<!-- defines aggregate unit test report -->
						<id>unit-tests-aggregate</id>
						<inherited>false</inherited>
						<reports>
							<report>report-only</report>
						</reports>
						<configuration>
							<aggregate>true</aggregate>
						</configuration>
					</reportSet>

					<!-- <reportSet> defines integration test reports in the modules <id>integration-tests</id> 
						<reports> <report>failsafe-report-only</report> </reports> </reportSet> -->
					<reportSet>
						<!-- defines aggregate integration test report -->
						<id>integration-tests-aggregate</id>
						<inherited>false</inherited>
						<reports>
							<report>failsafe-report-only</report>
						</reports>
						<configuration>
							<aggregate>true</aggregate>
						</configuration>
					</reportSet>
				</reportSets>
			</plugin>
		</plugins>
	</reporting>
	<dependencyManagement>
		<dependencies>
			<dependency>
				<groupId>javax.servlet</groupId>
				<artifactId>servlet-api</artifactId>
				<version>2.5</version>
				<scope>provided</scope>
			</dependency>
			<dependency>
				<groupId>org.testng</groupId>
				<artifactId>testng</artifactId>
				<version>6.8.21</version>
				<scope>test</scope>
			</dependency>
			<dependency>
				<groupId>com.auth0</groupId>
				<artifactId>java-jwt</artifactId>
				<version>3.10.3</version>
			</dependency>
			<!-- <dependency> <groupId>org.apache.tomcat</groupId> <artifactId>catalina</artifactId> 
				<version>6.0.37</version> <scope>test</scope> </dependency> -->
			<dependency>
				<groupId>log4j</groupId>
				<artifactId>log4j</artifactId>
				<version>1.2.17</version>
			</dependency>
			<dependency>
				<groupId>nl.javadude.assumeng</groupId>
				<artifactId>assumeng</artifactId>
				<version>1.2.4</version>
				<scope>test</scope>
			</dependency>
			<dependency>
				<groupId>org.xerial</groupId>
				<artifactId>sqlite-jdbc</artifactId>
				<version>3.8.11.1</version>
				<scope>test</scope>
			</dependency>
			<!-- <dependency> <groupId>org.apache.tomcat</groupId> <artifactId>tomcat-dbcp</artifactId> 
				<version>7.0.47</version> </dependency> -->
			<dependency>
				<groupId>javax.xml.soap</groupId>
				<artifactId>javax.xml.soap-api</artifactId>
				<version>1.4.0</version>
			</dependency>
				<dependency>
					<groupId>org.postgresql</groupId>
					<artifactId>postgresql</artifactId>
					<version>42.2.14</version>
				</dependency>
		</dependencies>
	</dependencyManagement>
</project><commit_msg>added dependency to avoid tomcat bootup errors<commit_after><?xml version="1.0" encoding="utf-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>com.novartis.opensource</groupId>
	<artifactId>YADA</artifactId>
	<version>9.0.0-SNAPSHOT</version>
	<name>YADA</name>
	<url>http://github.com/Novartis/YADA</url>
	<description>YADA (Yet Another Data Abstraction) Thin Server Framework</description>
	<inceptionYear>2016</inceptionYear>
	<packaging>pom</packaging>
	<licenses>
		<license>
			<name>Apache License, Version 2.0</name>
			<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
		</license>
	</licenses>
	<organization>
		<name>Novartis Institutes for BioMedical Research, Inc</name>
		<url>http://opensource.nibr.com</url>
	</organization>
	<distributionManagement>
		<site>
			<id>yada.site</id>
			<name>YADA site</name>
			<url>${distribution.site.url}</url>
		</site>
		<snapshotRepository>
			<id>ossrh</id>
			<url>https://oss.sonatype.org/content/repositories/snapshots</url>
		</snapshotRepository>
		<repository>
			<id>ossrh</id>
			<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
		</repository>
	</distributionManagement>
	<developers>
		<developer>
			<name><NAME></name>
			<email><EMAIL></email>
			<organization>Novartis Institutes for BioMedical Research</organization>
			<organizationUrl>http://opensource.nibr.com</organizationUrl>
		</developer>
	</developers>
	<scm>
		<connection>scm:git:ssh:git@github.com:Novartis/YADA.git</connection>
		<developerConnection>scm:git:ssh://git@github.com/Novartis/YADA.git</developerConnection>
		<url>scm:git:ssh://github.com/Novartis/YADA</url>
		<tag>HEAD</tag>
	</scm>
	<properties>
		<display.version>${project.version}</display.version>
		<projectVersion>${project.version}</projectVersion>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<main.basedir>${project.basedir}</main.basedir>
	</properties>
	<modules>
		<module>yada-api</module>
		<module>yada-war</module>
	</modules>
	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-release-plugin</artifactId>
				<version>2.5</version>
				<configuration>
					<useReleaseProfile>false</useReleaseProfile>
					<autoVersionSubmodules>true</autoVersionSubmodules>
					<tagNameFormat>@{project.version}</tagNameFormat>
					<goals>deploy</goals>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.sonatype.plugins</groupId>
				<artifactId>nexus-staging-maven-plugin</artifactId>
				<version>1.6.6</version>
				<extensions>true</extensions>
				<configuration>
					<serverId>ossrh</serverId>
					<nexusUrl>https://oss.sonatype.org/</nexusUrl>
					<autoReleaseAfterClose>true</autoReleaseAfterClose>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-gpg-plugin</artifactId>
				<version>1.5</version>
				<executions>
					<execution>
						<id>sign-artifacts</id>
						<phase>verify</phase>
						<goals>
							<goal>sign</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>com.mycila</groupId>
				<artifactId>license-maven-plugin</artifactId>
				<version>2.11</version>
				<configuration>
					<header>${main.basedir}/src/main/resources/license.txt</header>
					<useDefaultExcludes>true</useDefaultExcludes>
					<properties>
						<year>${project.inceptionYear}</year>
					</properties>
					<includes>
						<include>**/*.java</include>
						<include>**/*.xml</include>
						<include>**/*.xsl</include>
						<include>**/*.pl</include>
						<include>**/*.js</include>
						<include>**/*.html</include>
						<include>**/*.css</include>
						<include>**/*.jsp</include>
					</includes>
					<excludes>
						<exclude>pom.xml</exclude>
						<exclude>target/**</exclude>
						<exclude>src/site/**</exclude>
						<exclude>src/test/resources/conf/**</exclude>
						<exclude>src/test/resources/test/**</exclude>
						<exclude>src/main/resources/conf/**</exclude>
						<exclude>src/main/webapp/META-INF/**</exclude>
						<exclude>src/main/webapp/WEB-INF/**</exclude>
						<exclude>src/main/webapp/yada-admin/lib/**</exclude>
						<exclude>yada-api/src/main/resaurces/utils/r.js</exclude>
						<!-- excluded due to requirement for line feed at end of license -->
						<exclude>yada-war/src/main/webapp/yada.jsp</exclude>
					</excludes>
				</configuration>
				<executions>
					<execution>
						<goals>
							<goal>check</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-site-plugin</artifactId>
				<version>3.3</version>
				<dependencies>
					<dependency>
						<groupId>org.apache.maven.doxia</groupId>
						<artifactId>doxia-module-markdown</artifactId>
						<version>1.4</version>
					</dependency>
					<dependency>
						<groupId>org.apache.maven.wagon</groupId>
						<artifactId>wagon-ssh</artifactId>
						<version>1.0-beta-7</version>
					</dependency>
				</dependencies>
			</plugin>
			<plugin>
				<groupId>com.github.jeluard</groupId>
				<artifactId>plantuml-maven-plugin</artifactId>
				<version>1.1</version>
				<configuration>
					<sourceFiles>
						<directory>${basedir}</directory>
						<includes>
							<include>src/site/uml/*.uml</include>
						</includes>
					</sourceFiles>
					<outputDirectory>${basedir}/src/site/resources/images</outputDirectory>
				</configuration>
				<executions>
					<execution>
						<id>uml</id>
						<phase>pre-site</phase>
						<goals>
							<goal>generate</goal>
						</goals>
					</execution>
				</executions>
				<dependencies>
					<dependency>
						<groupId>net.sourceforge.plantuml</groupId>
						<artifactId>plantuml</artifactId>
						<version>8029</version>
					</dependency>
				</dependencies>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-antrun-plugin</artifactId>
				<version>1.6</version>
				<executions>
					<execution>
						<id>stub-assembly</id>
						<phase>pre-site</phase>
						<goals>
							<goal>run</goal>
						</goals>
						<configuration>
							<target>
								<!-- there are no longer any github source tree changes in this step -->
								<copy overwrite="true" file="readme.md" tofile="src/site/markdown/index.md" />

								<!-- update image refs in index -->
								<replaceregexp byline="true">
									<regexp pattern="(\!\[.+\]\()src/site/resources/(images/.+\))" />
									<substitution expression="\1\2" />
									<fileset dir="${basedir}/src/site/markdown/">
										<include name="index.md" />
									</fileset>
								</replaceregexp>

								<!-- update pure html image refs in index -->
								<replaceregexp byline="true">
									<regexp pattern="(&lt;img src=&quot;)src/site/resources/(images/.+)" />
									<substitution expression="\1\2" />
									<fileset dir="${basedir}/src/site/markdown/">
										<include name="index.md" />
									</fileset>
								</replaceregexp>
							</target>
						</configuration>
					</execution>
					<execution>
						<id>html-it</id>
						<phase>post-site</phase>
						<goals>
							<goal>run</goal>
						</goals>
						<configuration>
							<target>
								<!-- SITE -->

								<!-- convert .md hrefs into .html -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="((href=&quot;(src/site/markdown/)?(\w+)\.md(#\w+)?&quot;)+)" />
									<substitution expression="href=&quot;\4.html\5&quot;" />
									<fileset dir="${basedir}/target/">
										<include name="site/*.html" />
									</fileset>
								</replaceregexp>

								<!-- add link for github docs to site -->
								<replaceregexp file="${basedir}/target/site/index.html">
									<regexp pattern="(&lt;div id=&quot;bodyColumn&quot;\s+class=&quot;span9&quot;\s*&gt;)" />
									<substitution expression="\1&lt;p&gt;For the most recent updates to documentation, see &lt;a href=&quot;http://github.com/Novartis/YADA&quot;&gt;https://github.com/Novartis/YADA&lt;/a&gt;.&lt;/p&gt;" />
								</replaceregexp>

								<!-- update image refs in html files -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="(src=&quot;)\.\./resources/(images/.+)" />
									<substitution expression="\1\2" />
									<fileset dir="${basedir}/target/">
										<include name="site/*.html" />
									</fileset>
								</replaceregexp>

								<!-- mod copyright in html files -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="All Rights Reserved." />
									<substitution expression="" />
									<fileset dir="${basedir}/target/">
										<include name="site/*.html" />
									</fileset>
								</replaceregexp>

								<!-- add float to icon -->
								<replaceregexp>
									<regexp pattern="(&lt;img src=&quot;images/blox250.png.+)" />
									<substitution expression="&lt;div style=&quot;float:right;margin-top:-43px;&quot;&gt;\1&lt;/div&gt;" />
									<fileset dir="${basedir}/target/">
										<include name="site/*.html" />
									</fileset>
								</replaceregexp>

								<!-- STAGE -->

								<!-- convert .md hrefs into .html -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="((href=&quot;(src/site/markdown/)?(\w+)\.md(#\w+)?&quot;)+)" />
									<substitution expression="href=&quot;\4.html\5&quot;" />
									<fileset dir="${basedir}/target/">
										<include name="${stagingDirectory}/*.html" />
									</fileset>
								</replaceregexp>

								<!-- insert YAML into index.html STAGING ONLY. staging goes to svn 
									for opensource.nibr.com site gets deployed internally -->
								<replaceregexp file="${stagingDirectory}/index.html">
									<regexp pattern="(&lt;body\s.+&gt;)" />
									<substitution expression="\1--- name: YADA abbreviation: YADA projectName: YADA launched: 2015-11-01 icon: images/blox250.png summary: A universal remote control for data. description: | Access any data, at any source, in any format, from any environment, using just a URL, with just one-time configuration. Get data from multiple sources, in different formats, merge the results into one with uniform column names, on-the-fly, using one URL. **YADA** exists to simplify data access and eliminate work. **YADA** is a lightweight framework for data retrieval, searching, storage, and manipulation. **YADA** is an instant web service for your data. **YADA** is a tool to enable efficient development of interfaces and data-processing pipelines. **YADA** is an implementation of [Thin Server Architecture](http://bit.ly/1dhuiRY). **YADA** is an acronym for &quot;Yet Another Data Abstraction.&quot; Its [raisons d'être](http://bit.ly/1SHuiAd) are to enable efficient, non-redundant development of data-dependent applications and utilities, data source querying, data analysis, processing pipelines, extract, transform, and load (ETL) processes, etc. **YADA** does all this while preserving total decoupling between data access and other aspects of application architecture such as user interface. ---" />
								</replaceregexp>

								<!-- add link for github docs stage -->
								<replaceregexp file="${stagingDirectory}/index.html">
									<regexp pattern="(&lt;div id=&quot;bodyColumn&quot;\s+class=&quot;span9&quot;\s*&gt;)" />
									<substitution expression="\1&lt;p&gt;For the most recent updates to documentation, see &lt;a href=&quot;http://github.com/Novartis/YADA&quot;&gt;https://github.com/Novartis/YADA&lt;/a&gt;.&lt;/p&gt;" />
								</replaceregexp>

								<!-- update image refs in html files -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="(src=&quot;)\.\./resources/(images/.+)" />
									<substitution expression="\1\2" />
									<fileset dir="${basedir}/target/">
										<include name="${stagingDirectory}/*.html" />
									</fileset>
								</replaceregexp>

								<!-- mod copyright in html files -->
								<replaceregexp flags="g" byline="true">
									<regexp pattern="All Rights Reserved." />
									<substitution expression="" />
									<fileset dir="${basedir}/target/">
										<include name="${stagingDirectory}/*.html" />
									</fileset>
								</replaceregexp>

								<!-- add float to icon -->
								<replaceregexp>
									<regexp pattern="(&lt;img src=&quot;images/blox250.png.+)" />
									<substitution expression="&lt;div style=&quot;float:right;margin-top:-43px;&quot;&gt;\1&lt;/div&gt;" />
									<fileset dir="${basedir}/target/">
										<include name="${stagingDirectory}/*.html" />
									</fileset>
								</replaceregexp>

							</target>
						</configuration>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>
	<reporting>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-project-info-reports-plugin</artifactId>
				<version>2.7</version>
				<configuration>
					<dependencyDetailsEnabled>false</dependencyDetailsEnabled>
					<dependencyLocationsEnabled>false</dependencyLocationsEnabled>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-report-plugin</artifactId>
				<version>2.16</version>
				<reportSets>
					<!-- <reportSet> defines unit test reports in the modules <id>unit-tests</id> 
						<reports> <report>report</report> </reports> </reportSet> -->

					<reportSet>
						<!-- defines aggregate unit test report -->
						<id>unit-tests-aggregate</id>
						<inherited>false</inherited>
						<reports>
							<report>report-only</report>
						</reports>
						<configuration>
							<aggregate>true</aggregate>
						</configuration>
					</reportSet>

					<!-- <reportSet> defines integration test reports in the modules <id>integration-tests</id> 
						<reports> <report>failsafe-report-only</report> </reports> </reportSet> -->
					<reportSet>
						<!-- defines aggregate integration test report -->
						<id>integration-tests-aggregate</id>
						<inherited>false</inherited>
						<reports>
							<report>failsafe-report-only</report>
						</reports>
						<configuration>
							<aggregate>true</aggregate>
						</configuration>
					</reportSet>
				</reportSets>
			</plugin>
		</plugins>
	</reporting>
	<dependencyManagement>
		<dependencies>
			<dependency>
				<groupId>javax.servlet</groupId>
				<artifactId>servlet-api</artifactId>
				<version>2.5</version>
				<scope>provided</scope>
			</dependency>
			<dependency>
				<groupId>org.testng</groupId>
				<artifactId>testng</artifactId>
				<version>6.8.21</version>
				<scope>test</scope>
			</dependency>
			<dependency>
				<groupId>com.auth0</groupId>
				<artifactId>java-jwt</artifactId>
				<version>3.10.3</version>
			</dependency>
			<!-- <dependency> <groupId>org.apache.tomcat</groupId> <artifactId>catalina</artifactId> 
				<version>6.0.37</version> <scope>test</scope> </dependency> -->
			<dependency>
				<groupId>log4j</groupId>
				<artifactId>log4j</artifactId>
				<version>1.2.17</version>
			</dependency>
			<dependency>
				<groupId>nl.javadude.assumeng</groupId>
				<artifactId>assumeng</artifactId>
				<version>1.2.4</version>
				<scope>test</scope>
			</dependency>
			<dependency>
				<groupId>org.xerial</groupId>
				<artifactId>sqlite-jdbc</artifactId>
				<version>3.8.11.1</version>
				<scope>test</scope>
			</dependency>
			<!-- <dependency> <groupId>org.apache.tomcat</groupId> <artifactId>tomcat-dbcp</artifactId> 
				<version>7.0.47</version> </dependency> -->
			<dependency>
				<groupId>javax.xml.soap</groupId>
				<artifactId>javax.xml.soap-api</artifactId>
				<version>1.4.0</version>
			</dependency>
				<dependency>
					<groupId>org.postgresql</groupId>
					<artifactId>postgresql</artifactId>
					<version>42.2.14</version>
				</dependency>
		      <dependency>
        <groupId>com.sun.xml.messaging.saaj</groupId>
        <artifactId>saaj-impl</artifactId>
        <version>1.4.0</version>
    </dependency>
		</dependencies>
	</dependencyManagement>
</project>
{'fraction_non_alphanumeric': 0.17542941574832235, 'fraction_numerical': 0.009080834821153728, 'mean_word_length': 2.997907949790795, 'pattern_counts': {'":': 0, '<': 1218, '<?xml version=': 2, '>': 1218, 'https://': 10, 'lorem ipsum': 0, 'www.': 4, 'xml': 15}, 'pii_count': 5, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '838639', 'n_tokens_mistral': 14738, 'n_tokens_neox': 10216, 'n_words': 1674}