<commit_before># ====================================================================================================
# update the tribble code to the appropriate version, given the current GATK verion.
# this python script looks up the base version of the GATK, checks the date, and cross-references this
# against the Tribble version.  If the current Tribble check-out has modifications it fails-fast
# ====================================================================================================

import os, subprocess, re 
from subprocess import Popen, PIPE, STDOUT
from datetime import datetime, date, time

# test that we can use the SVN tool
print "checking that we can use svn and svnversion commands..."
outputSVN 			= Popen(["svn", 		"--version"], stdout=PIPE).communicate()[0]
outputSVNVersion 	= Popen(["svnversion", 	"--version"], stdout=PIPE).communicate()[0]

# match the regex
m = re.search('version\s+(\d+\.\d+\.\d+)',outputSVN)
m2 = re.search('version\s+(\d+\.\d+\.\d+)',outputSVNVersion)

if ((not m) or (not m2)):
	raise Exception("Unable to find svn and svnversion commands") 
	
if (m.group(1) != m.group(1)):
	raise Exception('Unable to match versions for svn (version ' + m.group(1) + ') and svnversion (version ' + m2.group(1) + ') commands') 

# check that we're in the base GATK directory
outputSVN = Popen(["svn","info"], stdout=PIPE).communicate()[0]
m = re.search('URL:\s+(.+)\s+',outputSVN)

print "checking that we're in the base directory of a SVN check-out of the GATK..."
if (not m):<commit_msg>clean-up the docs a little<commit_after># ====================================================================================================
# update the tribble code to the appropriate version, given the current GATK version.
# this python script looks up the base version of the GATK, checks the date, and cross-references this
# against the Tribble version.
# ====================================================================================================

import os, subprocess, re 
from subprocess import Popen, PIPE, STDOUT
from datetime import datetime, date, time

# test that we can use the SVN tool
print "checking that we can use svn and svnversion commands..."
outputSVN 			= Popen(["svn", 		"--version"], stdout=PIPE).communicate()[0]
outputSVNVersion 	= Popen(["svnversion", 	"--version"], stdout=PIPE).communicate()[0]

# match the regex
m = re.search('version\s+(\d+\.\d+\.\d+)',outputSVN)
m2 = re.search('version\s+(\d+\.\d+\.\d+)',outputSVNVersion)

if ((not m) or (not m2)):
	raise Exception("Unable to find svn and svnversion commands") 
	
if (m.group(1) != m.group(1)):
	raise Exception('Unable to match versions for svn (version ' + m.group(1) + ') and svnversion (version ' + m2.group(1) + ') commands') 

# check that we're in the base GATK directory
outputSVN = Popen(["svn","info"], stdout=PIPE).communicate()[0]
m = re.search('URL:\s+(.+)\s+',outputSVN)

print "checking that we're in the base directory of a SVN check-out of the GATK..."
if (not m):
{'fraction_non_alphanumeric': 0.2632450331125828, 'fraction_numerical': 0.006622516556291391, 'mean_word_length': 5.267634854771784, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2482424', 'n_tokens_mistral': 932, 'n_tokens_neox': 886, 'n_words': 304}