<commit_before><macros>
    <macro name="requirements">
        <requirements>
            <requirement type="package" version="1.2.3">ngs_sdk</requirement>
            <requirement type="package" version="2.6.2">ncbi_vdb</requirement>
            <requirement type="package" version="2.6.2">sra_toolkit</requirement>
            <requirement type="package" version="5.18.1">perl</requirement>
        </requirements>
    </macro>
    <macro name="input_conditional">
        <conditional name="input">
            <param name="input_select" type="select" label="select input type">
                <option value="accession_number">SRR accession</option>
                <option value="file">SRA archive in current history</option>
                <option value="file_list">List of SRA accession, one per line</option>
            </param>
            <when value="accession_number">
                <param name="accession" type="text" label="SRR accession" help="Must start with SRR,DRR or ERR, e.g. SRR925743 , ERR343809"/>
            </when>
            <when value="file">
                <param format="sra" name="file" type="data" label="sra archive"/><commit_msg>added additional sra-tools conda requirement.<commit_after><macros>
    <macro name="requirements">
        <requirements>
            <requirement type="package" version="1.2.3">ngs_sdk</requirement>
            <requirement type="package" version="2.6.2">ncbi_vdb</requirement>
            <requirement type="package" version="2.6.2">sra_toolkit</requirement>
            <requirement type="package" version="2.6.2">sra-tools</requirement>
            <requirement type="package" version="5.18.1">perl</requirement>
        </requirements>
    </macro>
    <macro name="input_conditional">
        <conditional name="input">
            <param name="input_select" type="select" label="select input type">
                <option value="accession_number">SRR accession</option>
                <option value="file">SRA archive in current history</option>
                <option value="file_list">List of SRA accession, one per line</option>
            </param>
            <when value="accession_number">
                <param name="accession" type="text" label="SRR accession" help="Must start with SRR,DRR or ERR, e.g. SRR925743 , ERR343809"/>
            </when>
            <when value="file">
                <param format="sra" name="file" type="data" label="sra archive"/>
{'fraction_non_alphanumeric': 0.1426242868785656, 'fraction_numerical': 0.021597392013039934, 'mean_word_length': 2.7084592145015107, 'pattern_counts': {'":': 0, '<': 61, '<?xml version=': 0, '>': 61, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6177238', 'n_tokens_mistral': 736, 'n_tokens_neox': 689, 'n_words': 148}