<commit_before># Changelog
All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

# 3.8.2 211106

- mq
    - add SimRNA
	- eSCORE fix, change baRNAba_PATH to baRNAba_data_PATH	
- rna_calc_rmsd.py: --way, backbone+sugar, c1p, backbone, no_backbone, bases, all

# 3.8.1 211031

- mq/FARFAR2: own config FARFAR2_PATH, FARFAR2_DB_PATH, FARFAR2_LORES #118 

# 3.8 211031

mqapRNA (mq):
- add farfar2 wrapper #118
- change: rna_mq_collect.py & rna_mq_predict.py

molecular dynamics (md)
- add --mdr #117 

wx: change pefx.py

# 3.7.4 210727

	Add:
		PyMOL4RNA.py: seq * and seqsel (redundant function)

# 3.7

    Fixed:
    
        rna_tools_lib.py (RNAStructure) for remove_hydrogen, correct atom name position now<commit_msg>refactor versions, 3.7.16, remove 3.8.x<commit_after># Changelog
All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

# 3.7.16
211106

- mqapRNA (mq):
    - add SimRNA
	- eSCORE fix, change baRNAba_PATH to baRNAba_data_PATH	
    - FARFAR2: own config FARFAR2_PATH, FARFAR2_DB_PATH, FARFAR2_LORES #118 
	- add farfar2 wrapper #118
	- change: rna_mq_collect.py & rna_mq_predict.py
- rna_calc_rmsd.py: --way, backbone+sugar, c1p, backbone, no_backbone, bases, all

- molecular dynamics (md)
    - add --mdr #117 

- wx (pipeline)
    - change pefx.py

# 3.7.4 210727

	Add:
		PyMOL4RNA.py: seq * and seqsel (redundant function)

# 3.7

    Fixed:
    
        rna_tools_lib.py (RNAStructure) for remove_hydrogen, correct atom name position now
{'fraction_non_alphanumeric': 0.10790190735694823, 'fraction_numerical': 0.05885558583106267, 'mean_word_length': 3.488997555012225, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '559580', 'n_tokens_mistral': 818, 'n_tokens_neox': 731, 'n_words': 193}