<commit_before><!DOCTYPE html>
<html>
    <head>
        <title>
            Third-Party Libraries
        </title>

        <meta http-equiv="content-type" content="text/html; charset=utf-8"/>

        <link href="res/stylesheet.css" rel="stylesheet" type="text/css"/>

        <script src="../3rdparty/jQuery/jquery.js" type="text/javascript"></script>
        <script src="../res/common.js" type="text/javascript"></script>
        <script src="res/menu.js" type="text/javascript"></script>
    </head>
    <body ondragstart="return false;" ondrop="return false;">
        <script type="text/javascript">
            headerAndContentsMenu("Third-Party Libraries", "..");
        </script>

        <p>
            OpenCOR uses various APIs, as well as software- and image-based third-party libraries, all of which are listed below, together with the type of license(s) under which they are released, if any.
        </p>

        <div class="section">
            APIs
        </div>

        <ul>
            <li>
   ﻿             <a href="https://github.com/cellmlapi/cellml-api/">CellML API</a> (the version from commit <a href="https://github.com/cellmlapi/cellml-api/tree/987dd9d530746156c731608ac38647c1e38ecc2c">987dd9d530</a>): an interface to manipulate and process <a href="http://www.cellml.org/">CellML</a> documents.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/api/CellMLAPI"><code>[OpenCOR]/src/plugins/api/CellMLAPI</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/MPL-1.1">MPL v1.1</a>, <a href="http://opensource.org/licenses/GPL-2.0">GPL v2.0</a> (or later) and <a href="http://opensource.org/licenses/LGPL-2.1">LGPL v2.1</a> (or later).</li>
                </ul>
            </li>
            <li>
   ﻿             <a href="http://sbml.org/Software/libSBML/">libSBML</a> 5.11.4: a programming library to help you read, write, manipulate, translate and validate <a href="http://www.sbml.org/">SBML</a> files and data streams.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/api/SBMLAPI"><code>[OpenCOR]/src/plugins/api/SBMLAPI</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/LGPL-2.1">LGPL v2.1</a> (or later).</li>
                </ul>
            </li>
            <li>
   ﻿             <a href="https://github.com/fbergmann/libSEDML/">libSEDML</a> (the version from commit <a href="https://github.com/fbergmann/libSEDML/tree/09c5e99e4518f0862511dcaef9a30d62125cb0e4">09c5e99e45</a>): a library for reading and writing <a href="http://www.sed-ml.org/">SED-ML</a> models.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/api/SEDMLAPI"><code>[OpenCOR]/src/plugins/api/SEDMLAPI</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/BSD-2-Clause">BSD 2-Clause</a>.</li>
                </ul>
            </li>
        </ul>

        <div class="section">
            Software
        </div>

        <ul>
            <li>
                <a href="https://github.com/google/code-prettify">Google Code Prettify</a>: a <a href="http://en.wikipedia.org/wiki/JavaScript">JavaScript</a> module and <a href="http://www.w3.org/Style/CSS/">CSS</a> file for syntax highlighting of source code snippets in an <a href="http://www.w3.org/html/">HTML</a> page.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/doc/3rdparty/googleCodePrettify"><code>[OpenCOR]/doc/3rdparty/googleCodePrettify</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/Apache-2.0">Apache v2.0</a>.</li>
                </ul>
            </li>
            <li>
                <a href="http://jquery.com/">jQuery</a> 2.1.4: a fast and concise <a href="http://en.wikipedia.org/wiki/JavaScript">JavaScript</a> library that simplifies <a href="http://www.w3.org/html/">HTML</a> document traversing, event handling, animating, and <a href="http://en.wikipedia.org/wiki/Ajax_(programming)">Ajax</a> interactions for rapid web development.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/doc/3rdparty/jQuery"><code>[OpenCOR]/doc/3rdparty/jQuery</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/MIT">MIT</a>.</li>
                </ul>
            </li>
            <li>
                <a href="http://khan.github.io/KaTeX/">KaTeX</a> 0.5.0: fast math typesetting for the web.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/doc/3rdparty/KaTeX"><code>[OpenCOR]/doc/3rdparty/KaTeX</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/MIT">MIT</a>.</li>
                </ul>
            </li>
            <li>
                <a href="https://libgit2.github.com/">libgit2</a> 0.23.1: a portable, pure C implementation of the <a href="http://git-scm.com/">Git</a> core methods provided as a re-entrant linkable library with a solid API.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/thirdParty/libgit2"><code>[OpenCOR]/src/plugins/thirdParty/libgit2</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/GPL-2.0">GPL v2.0</a> with linking exception.</li>
                </ul>
            </li>
            <li>
                <a href="http://www.llvm.org/">LLVM</a> 3.6.2 (incl. <a href="http://clang.llvm.org/">Clang</a>): a collection of modular and reusable compiler and toolchain technologies.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/thirdParty/LLVM"><code>[OpenCOR]/src/plugins/thirdParty/LLVM</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/UoI-NCSA">UoI/NCSA</a>.</li>
                </ul>
            </li><commit_msg>Slight update to the developer documentation [ci skip].<commit_after><!DOCTYPE html>
<html>
    <head>
        <title>
            Third-Party Libraries
        </title>

        <meta http-equiv="content-type" content="text/html; charset=utf-8"/>

        <link href="res/stylesheet.css" rel="stylesheet" type="text/css"/>

        <script src="../3rdparty/jQuery/jquery.js" type="text/javascript"></script>
        <script src="../res/common.js" type="text/javascript"></script>
        <script src="res/menu.js" type="text/javascript"></script>
    </head>
    <body ondragstart="return false;" ondrop="return false;">
        <script type="text/javascript">
            headerAndContentsMenu("Third-Party Libraries", "..");
        </script>

        <p>
            OpenCOR uses various APIs, as well as software- and image-based third-party libraries, all of which are listed below, together with the type of license(s) under which they are released, if any.
        </p>

        <div class="section">
            APIs
        </div>

        <ul>
            <li>
   ﻿             <a href="https://github.com/cellmlapi/cellml-api/">CellML API</a> (the version from commit <a href="https://github.com/cellmlapi/cellml-api/tree/987dd9d530746156c731608ac38647c1e38ecc2c">987dd9d530</a>): an interface to manipulate and process <a href="http://www.cellml.org/">CellML</a> documents.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/api/CellMLAPI"><code>[OpenCOR]/src/plugins/api/CellMLAPI</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/MPL-1.1">MPL v1.1</a>, <a href="http://opensource.org/licenses/GPL-2.0">GPL v2.0</a> (or later) and <a href="http://opensource.org/licenses/LGPL-2.1">LGPL v2.1</a> (or later).</li>
                </ul>
            </li>
            <li>
   ﻿             <a href="http://sbml.org/Software/libSBML/">libSBML</a> 5.11.4: a programming library to help you read, write, manipulate, translate and validate <a href="http://www.sbml.org/">SBML</a> files and data streams.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/api/SBMLAPI"><code>[OpenCOR]/src/plugins/api/SBMLAPI</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/LGPL-2.1">LGPL v2.1</a> (or later).</li>
                </ul>
            </li>
            <li>
   ﻿             <a href="https://github.com/fbergmann/libSEDML/">libSEDML</a> (the version from commit <a href="https://github.com/fbergmann/libSEDML/tree/09c5e99e4518f0862511dcaef9a30d62125cb0e4">09c5e99e45</a>): a library for reading and writing <a href="http://www.sed-ml.org/">SED-ML</a> models.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/api/SEDMLAPI"><code>[OpenCOR]/src/plugins/api/SEDMLAPI</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/BSD-2-Clause">BSD 2-Clause</a>.</li>
                </ul>
            </li>
        </ul>

        <div class="section">
            Software
        </div>

        <ul>
            <li>
                <a href="https://github.com/google/code-prettify">Google Code Prettify</a>: a <a href="http://en.wikipedia.org/wiki/JavaScript">JavaScript</a> module and <a href="http://www.w3.org/Style/CSS/">CSS</a> file for syntax highlighting of source code snippets in an <a href="http://www.w3.org/html/">HTML</a> page.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/doc/3rdparty/googleCodePrettify"><code>[OpenCOR]/doc/3rdparty/googleCodePrettify</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/Apache-2.0">Apache v2.0</a>.</li>
                </ul>
            </li>
            <li>
                <a href="http://jquery.com/">jQuery</a> 2.1.4: a fast and concise <a href="http://en.wikipedia.org/wiki/JavaScript">JavaScript</a> library that simplifies <a href="http://www.w3.org/html/">HTML</a> document traversing, event handling, animating, and <a href="http://en.wikipedia.org/wiki/Ajax_(programming)">Ajax</a> interactions for rapid web development.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/doc/3rdparty/jQuery"><code>[OpenCOR]/doc/3rdparty/jQuery</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/MIT">MIT</a>.</li>
                </ul>
            </li>
            <li>
                <a href="http://khan.github.io/KaTeX/">KaTeX</a> 0.5.1: fast math typesetting for the web.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/doc/3rdparty/KaTeX"><code>[OpenCOR]/doc/3rdparty/KaTeX</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/MIT">MIT</a>.</li>
                </ul>
            </li>
            <li>
                <a href="https://libgit2.github.com/">libgit2</a> 0.23.1: a portable, pure C implementation of the <a href="http://git-scm.com/">Git</a> core methods provided as a re-entrant linkable library with a solid API.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/thirdParty/libgit2"><code>[OpenCOR]/src/plugins/thirdParty/libgit2</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/GPL-2.0">GPL v2.0</a> with linking exception.</li>
                </ul>
            </li>
            <li>
                <a href="http://www.llvm.org/">LLVM</a> 3.6.2 (incl. <a href="http://clang.llvm.org/">Clang</a>): a collection of modular and reusable compiler and toolchain technologies.
                <ul>
                    <li>Location: <a href="https://github.com/opencor/opencor/tree/master/src/plugins/thirdParty/LLVM"><code>[OpenCOR]/src/plugins/thirdParty/LLVM</code></a>.</li>
                    <li>Licensing: <a href="http://opensource.org/licenses/UoI-NCSA">UoI/NCSA</a>.</li>
                </ul>
            </li>
{'fraction_non_alphanumeric': 0.18154809699694877, 'fraction_numerical': 0.020234462823189338, 'mean_word_length': 2.22417809992234, 'pattern_counts': {'":': 0, '<': 371, '<?xml version=': 0, '>': 371, 'https://': 28, 'lorem ipsum': 0, 'www.': 14, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '1067271', 'n_tokens_mistral': 4348, 'n_tokens_neox': 4029, 'n_words': 680}