<commit_before>FROM ubuntu:16.04

# docker build -t dnanexus/dxwdl .

# 1. DNANexus SDK (dx-toolkit)
RUN apt-get update && apt-get install -y wget git openssl python python-dev g++ default-jdk
RUN wget https://wiki.dnanexus.com/images/files/dx-toolkit-v0.276.0-ubuntu-16.04-amd64.tar.gz && \
    tar -xzvf dx-toolkit-v0.276.0-ubuntu-16.04-amd64.tar.gz && \
    /bin/bash -c "source /dx-toolkit/environment"
ENV PATH /dx-toolkit/bin:$PATH

# Python and pip (Python 2.7 is required)
RUN wget https://bootstrap.pypa.io/get-pip.py && \
    python get-pip.py && \
    pip install dxpy
RUN dx upgrade

# Upload Agent
WORKDIR /
RUN wget https://wiki.dnanexus.com/images/files/dnanexus-upload-agent-1.5.30-linux.tar.gz && \
    tar -xzvf dnanexus-upload-agent-1.5.30-linux.tar.gz && \
    cd dnanexus-upload-agent-1.5.30-linux
ENV PATH $PATH:/dnanexus-upload-agent-1.5.30-linux

# dxWDL
WORKDIR /
ARG DXWDL_VERSION=0.81.1
RUN wget https://github.com/dnanexus/dxWDL/releases/download/$DXWDL_VERSION/dxWDL-$DXWDL_VERSION.jar && \
    chmod +x dxWDL-$DXWDL_VERSION.jar && mv dxWDL-$DXWDL_VERSION.jar dxWDL.jar

ENTRYPOINT ["java", "-jar", "/dxWDL.jar"]<commit_msg>Minor update<commit_after>FROM ubuntu:16.04

# docker build -t dnanexus/dxwdl .

# 1. DNANexus SDK (dx-toolkit)
RUN apt-get update && apt-get install -y wget git openssl python python-dev g++ default-jdk
RUN wget https://wiki.dnanexus.com/images/files/dx-toolkit-v0.276.0-ubuntu-16.04-amd64.tar.gz && \
    tar -xzvf dx-toolkit-v0.276.0-ubuntu-16.04-amd64.tar.gz && \
    /bin/bash -c "source /dx-toolkit/environment"
ENV PATH /dx-toolkit/bin:$PATH

# Python and pip (Python 2.7 is required)
RUN wget https://bootstrap.pypa.io/get-pip.py && \
    python get-pip.py && \
    pip install dxpy
RUN dx upgrade

# Upload Agent
WORKDIR /
RUN wget https://wiki.dnanexus.com/images/files/dnanexus-upload-agent-1.5.30-linux.tar.gz && \
    tar -xzvf dnanexus-upload-agent-1.5.30-linux.tar.gz && \
    cd dnanexus-upload-agent-1.5.30-linux
ENV PATH $PATH:/dnanexus-upload-agent-1.5.30-linux

# dxWDL
WORKDIR /
ARG DXWDL_VERSION=0.81.2
RUN wget https://github.com/dnanexus/dxWDL/releases/download/$DXWDL_VERSION/dxWDL-$DXWDL_VERSION.jar && \
    chmod +x dxWDL-$DXWDL_VERSION.jar && mv dxWDL-$DXWDL_VERSION.jar dxWDL.jar

ENTRYPOINT ["java", "-jar", "/dxWDL.jar"]
{'fraction_non_alphanumeric': 0.1596529284164859, 'fraction_numerical': 0.04251626898047722, 'mean_word_length': 3.3022388059701493, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 8, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3482881', 'n_tokens_mistral': 1041, 'n_tokens_neox': 950, 'n_words': 170}