<commit_before># Matamog

## Install

`git submodule update --init --recursive`

## Dependencies

### ovgraphbuild

* gcc v5.1 or superior (full C++14 support)
* libraries: rt, pthread, zlib
* Seqan v2.0.1 or superior (provided as a submodule of ovgraphbuild)

### SGA

* google sparse hash library
* Bamtools library (http://github.com/pezmaster31/bamtools, provided as a submodule of matamog)
* zlib
* (optional but suggested) the jemalloc memory allocator<commit_msg>Added bamtools dependencies<commit_after># Matamog

## Install

`git submodule update --init --recursive`

## Dependencies

### ovgraphbuild

* gcc v5.1 or superior (full C++14 support)
* libraries: rt, pthread, zlib
* Seqan v2.0.1 or superior (provided as a submodule of ovgraphbuild)

### SGA

* google sparse hash library
* Bamtools library (http://github.com/pezmaster31/bamtools, provided as a submodule of matamog)
* zlib
* (optional but suggested) the jemalloc memory allocator

### bamtools

* zlib
{'fraction_non_alphanumeric': 0.10655737704918032, 'fraction_numerical': 0.018442622950819672, 'mean_word_length': 4.6473988439306355, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2782736', 'n_tokens_mistral': 336, 'n_tokens_neox': 321, 'n_words': 109}