<commit_before>FROM kbase/kbase:sdkbase2.latest
MAINTAINER KBase Developer
# -----------------------------------------

# Insert apt-get instructions here to install
# any required dependencies for your module.

RUN apt-get clean
RUN apt-get update

RUN sudo apt-get install -y python-dev libffi-dev libssl-dev
RUN pip install cffi --upgrade
RUN pip install pyopenssl --upgrade
RUN pip install ndg-httpsclient --upgrade
RUN pip install pyasn1 --upgrade
RUN pip install requests --upgrade \
    && pip install 'requests[security]' --upgrade

# Debug tools = all below six
RUN pip install six \
    && pip install ipython==5.3.0 \
    && apt-get install nano \
    && apt-get install tree

RUN cd /opt \
    && git clone https://github.com/kbase/jars \
    && mkdir lib \
    && cp jars/lib/jars/FastaValidator/FastaValidator-1.0.jar lib

RUN cd /opt \
    && git clone https://github.com/statgen/libStatGen.git \
    && cd libStatGen \
    && make
<commit_msg>clean up docker<commit_after>FROM kbase/kbase:sdkbase2.latest
MAINTAINER KBase Developer
# -----------------------------------------

# Insert apt-get instructions here to install
# any required dependencies for your module.

# RUN apt-get update

RUN pip install cffi --upgrade
RUN pip install pyopenssl --upgrade
RUN pip install ndg-httpsclient --upgrade
RUN pip install pyasn1 --upgrade
RUN pip install requests --upgrade \
    && pip install 'requests[security]' --upgrade

# Debug tools = all below six
RUN pip install six \
    && pip install ipython==5.3.0 \
    && apt-get install nano \
    && apt-get install tree

RUN cd /opt \
    && git clone https://github.com/kbase/jars \
    && mkdir lib \
    && cp jars/lib/jars/FastaValidator/FastaValidator-1.0.jar lib

RUN cd /opt \
    && git clone https://github.com/statgen/libStatGen.git \
    && cd libStatGen \
    && make

{'fraction_non_alphanumeric': 0.14487249050461204, 'fraction_numerical': 0.007596310363537711, 'mean_word_length': 2.512380952380952, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '7672845', 'n_tokens_mistral': 576, 'n_tokens_neox': 548, 'n_words': 187}