<commit_before>

FROM ubuntu:14.04

# example: docker build -t autoskewer:latest .



RUN apt-get update && apt-get install -y wget unzip git make g++ python

# bowtie
RUN wget --content-disposition http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.5/bowtie2-2.2.5-linux-x86_64.zip/download && unzip bowtie2-2.2.5-linux-x86_64.zip && cp /bowtie2-2.2.5/bowtie2* /usr/local/bin


# skewer (forked version)
RUN git clone http://github.com/relipmoc/skewer && cd skewer && git checkout tags/0.2.2 && make && make install

#autoskewer
RUN git clone http://github.com/MG-RAST/autoskewer && cd autoskewer && make

ENV PATH /autoskewer/:$PATH

CMD ["bash"]<commit_msg>updates dockerfile<commit_after>
FROM ubuntu:14.04

# example: docker build -t autoskewer:latest .

RUN apt-get update && apt-get install -y wget unzip git make g++ python

# bowtie
RUN wget --content-disposition http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.5/bowtie2-2.2.5-linux-x86_64.zip/download && unzip bowtie2-2.2.5-linux-x86_64.zip && cp /bowtie2-2.2.5/bowtie2* /usr/local/bin

# skewer (forked version)
RUN git clone http://github.com/relipmoc/skewer && cd skewer && git checkout tags/0.2.2 && make && make install

#autoskewer
RUN git clone http://github.com/MG-RAST/autoskewer && cd autoskewer && make

ENV PATH /autoskewer/autoskewer:$PATH

CMD ["autoskewer.py"]
{'fraction_non_alphanumeric': 0.14779411764705883, 'fraction_numerical': 0.047058823529411764, 'mean_word_length': 3.9133574007220218, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 2, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '2446433', 'n_tokens_mistral': 572, 'n_tokens_neox': 525, 'n_words': 116}