<commit_before>{

"register" : {"baseScan": {"identifier":{"seriesDate":"first"}},
"movingScan":{"identifier":{"seriesDate":"last"}},
"method": "none",
"copyStr":"GTV",
"renameStr":"GTV_copy"},

"input":{    
    "scan": [{
         "identifier" : {"seriesDate":"first"}, 
         "view" : ["axial"],
         "crop" : {     
                    "method": "crop_around_structure_center",
                    "params": { "structureName": "GTV", "margins":[192,192,48]},
                    "operator": ""
                  },
         "channels" :{"imageType": "original", "slice": "current"}
       },
       {
        "identifier" : {"seriesDate":"last"}, 
        "view" : ["axial"],
        "crop": {
                    "method": "crop_around_structure_center",
                    "params": { "structureName": "GTV_copy", "margins":[192,192,48]},
                    "operator": ""
                },
        "channels": {"imageType":"original", "slice": "current"}
       }],
   "structure": {"name": "GTV_copy"}
},

"passedScanDim" : "3D",    

"batchSize" : 1,

"output":{   
    "labelMap":{"strNameToLabelMap" : [{"structureName": "GTV","value": 1}]},
    "DVF":{"outputFormat" : "H5", "outputDir":"/cluster/home/iyera/jue_test/Out/"}
},
"outputAssocScan": {"identifier" : {"seriesDate":"last"}},
"reference" : ""
}<commit_msg>Updated output dir for STRATIS use<commit_after>{

"register" : {"baseScan": {"identifier":{"seriesDate":"first"}},
"movingScan":{"identifier":{"seriesDate":"last"}},
"method": "none",
"copyStr":"GTV",
"renameStr":"GTV_copy"},

"input":{    
    "scan": [{
         "identifier" : {"seriesDate":"first"}, 
         "view" : ["axial"],
         "crop" : {     
                    "method": "crop_around_structure_center",
                    "params": { "structureName": "GTV", "margins":[192,192,48]},
                    "operator": ""
                  },
         "channels" :{"imageType": "original", "slice": "current"}
       },
       {
        "identifier" : {"seriesDate":"last"}, 
        "view" : ["axial"],
        "crop": {
                    "method": "crop_around_structure_center",
                    "params": { "structureName": "GTV_copy", "margins":[192,192,48]},
                    "operator": ""
                },
        "channels": {"imageType":"original", "slice": "current"}
       }],
   "structure": {"name": "GTV_copy"}
},

"passedScanDim" : "3D",    

"batchSize" : 1,

"output":{   
    "labelMap":{"strNameToLabelMap" : [{"structureName": "GTV","value": 1}]},
    "DVF":{"outputFormat" : "H5", "outputDir":"/content/temp_AI_session"}
},
"outputAssocScan": {"identifier" : {"seriesDate":"last"}},    
"reference" : ""
}
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{'dir': 'git-commits-cleaned', 'id': '4236560', 'n_tokens_mistral': 904, 'n_tokens_neox': 834, 'n_words': 131}