<commit_before>notifications:
  slack: wtsi-cgpit:ptUMR1tkNyZJYd9TpGoss8WR
  email: false

env:
 - CC=gcc

addons:
 apt:
  packages:
   - build-essential
   - autoconf
   - curl
   - zlib1g-dev
   - libncurses5-dev
   - libpstreams-dev
   - libcurl4-openssl-dev

install: true

language: perl

perl:
 - "5.22"

script:
 - git clone --depth 1 --single-branch --branch dev https://github.com/cancerit/cgpVcf.git
 - cd cgpVcf
 - ./setup.sh $HOME/cgpVcf-opt
 - cd ../
 - git clone --depth 1 --single-branch --branch dev https://github.com/cancerit/VAGrENT.git
 - cd VAGrENT
 - ./setup.sh $HOME/VAGrENT-opt $HOME/cgpVcf-opt/lib/perl5
 - cd ../
 - ./setup.sh $HOME/grass-opt $HOME/VAGrENT-opt/lib/perl5:$HOME/cgpVcf-opt/lib/perl5<commit_msg>cleanup intermediates to prevent re-testing<commit_after>notifications:
  slack: wtsi-cgpit:ptUMR1tkNyZJYd9TpGoss8WR
  email: false

env:
 - CC=gcc

addons:
 apt:
  packages:
   - build-essential
   - autoconf
   - curl
   - zlib1g-dev
   - libncurses5-dev
   - libpstreams-dev
   - libcurl4-openssl-dev

install: true

language: perl

perl:
 - "5.22"

script:
 - git clone --depth 1 --single-branch --branch dev https://github.com/cancerit/cgpVcf.git
 - cd cgpVcf
 - ./setup.sh $HOME/cgpVcf-opt
 - cd ../
 - rm -rf cgpVcf
 - git clone --depth 1 --single-branch --branch dev https://github.com/cancerit/VAGrENT.git
 - cd VAGrENT
 - ./setup.sh $HOME/VAGrENT-opt $HOME/cgpVcf-opt/lib/perl5
 - cd ../
 - rm -rf VAGrENT
 - ./setup.sh $HOME/grass-opt $HOME/VAGrENT-opt/lib/perl5:$HOME/cgpVcf-opt/lib/perl5
{'fraction_non_alphanumeric': 0.149185667752443, 'fraction_numerical': 0.018241042345276872, 'mean_word_length': 2.6056338028169015, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5160684', 'n_tokens_mistral': 685, 'n_tokens_neox': 646, 'n_words': 117}