<commit_before>solr_assocs:
  url: "https://solr.monarchinitiative.org/solr/golr"
  timeout: 60
amigo_solr_assocs:
  url: "http://golr-aux.geneontology.io/solr"
  timeout: 4
solr_search:
  url: "https://solr.monarchinitiative.org/solr/search"
  timeout: 10
lay_person_search:
  url: "https://solr.monarchinitiative.org/solr/hpo-pl"
  timeout: 10
amigo_solr_search:
  url: "http://golr-aux.geneontology.io/solr"
  timeout: 2
sparql:
  url: "http://sparql.hegroup.org/sparql"
  timeout: 2
scigraph_ontology:
  url: "https://scigraph-ontology.monarchinitiative.org/scigraph/"
  timeout: 2
scigraph_data:
  url: "https://scigraph-data.monarchinitiative.org/scigraph/"
  timeout: 2
owlsim2:
  url: "https://monarchinitiative.org/owlsim/"
  timeout: 10
owlsim3:
  url: "http://owlsim3.monarchinitiative.org/api/"
  timeout: 5
use_amigo_for:
  - function
ontologies:
  - id: magic1234
    handle: pato
    pre_load: true
# taxon_restriction: 
#   - NCBITaxon:10090
#   - NCBITaxon:9606
#   - NCBITaxon:10116
#   - NCBITaxon:559292
#   - NCBITaxon:6239
#   - NCBITaxon:7955<commit_msg>Update config.yaml<commit_after>solr_assocs:
  url: "https://solr.monarchinitiative.org/solr/golr"
  timeout: 60
amigo_solr_assocs:
  url: "http://golr-aux.geneontology.io/solr"
  timeout: 15
solr_search:
  url: "https://solr.monarchinitiative.org/solr/search"
  timeout: 15
lay_person_search:
  url: "https://solr.monarchinitiative.org/solr/hpo-pl"
  timeout: 15
amigo_solr_search:
  url: "http://golr-aux.geneontology.io/solr"
  timeout: 15
sparql:
  url: "http://sparql.hegroup.org/sparql"
  timeout: 30
scigraph_ontology:
  url: "https://scigraph-ontology.monarchinitiative.org/scigraph/"
  timeout: 15
scigraph_data:
  url: "https://scigraph-data.monarchinitiative.org/scigraph/"
  timeout: 15
owlsim2:
  url: "https://monarchinitiative.org/owlsim/"
  timeout: 15
owlsim3:
  url: "http://owlsim3.monarchinitiative.org/api/"
  timeout: 15
use_amigo_for:
  - function
ontologies:
  - id: magic1234
    handle: pato
    pre_load: true
# taxon_restriction: 
#   - NCBITaxon:10090
#   - NCBITaxon:9606
#   - NCBITaxon:10116
#   - NCBITaxon:559292
#   - NCBITaxon:6239
#   - NCBITaxon:7955
{'fraction_non_alphanumeric': 0.13995381062355658, 'fraction_numerical': 0.04803695150115474, 'mean_word_length': 4.025522041763341, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 12, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3666910', 'n_tokens_mistral': 1010, 'n_tokens_neox': 889, 'n_words': 132}