<commit_before>{
  "name" : "Create Expression Matrix",
  "ver" : "1.0.1",
  "authors" : [ ],
  "contact" : "<EMAIL>",
  "visible" : true,
  "categories" : ["active"],
  "widgets" : {
    "input" : null,
    "output" : "kbaseExpressionMatrix" 
  },
  "parameters" : [ {
    "id" : "ws_cuffdiff_id",
    "optional" : false,
    "advanced" : false,
    "allow_multiple" : false,
    "default_values" : [ "" ],
    "field_type" : "text",
    "text_options" : {
      "valid_ws_types" : ["KBaseRNASeq.RNASeqCuffdiffdifferentialExpression" ]
    }
  }, {
    "id": "include_replicates",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":[""],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id" : "ws_expression_matrix_id",
    "optional" : false,
    "advanced" : false,
    "allow_multiple" : false,
    "default_values" : [ "" ],
    "field_type" : "text",
    "text_options" : {
      "valid_ws_types" : [ "KBaseFeatureValues.ExpressionMatrix" ],
      "is_output_name":true
    } 
 } ],
  "behavior" : {
    "service-mapping" : {
    "url" : "",
    "name" : "kb_cummerbund",
    "method" : "create_expression_matrix",
    "input_mapping" : [
        {
          "narrative_system_variable": "workspace",
          "target_property": "workspace_name"
        },
        {
          "input_parameter": "ws_cuffdiff_id",
          "target_property": "ws_cuffdiff_id"
        },
        {
          "input_parameter": "include_replicates",
          "target_property": "include_replicates"
        },
        {
          "input_parameter": "ws_expression_matrix_id",
          "target_property": "ws_expression_matrix_id"
       }
    ],
    "output_mapping": [
	{
	 "service_method_output_path": [0],
         "target_property": "create_expression_matrix"
	}
      ]
    }
  },
  "job_id_output_field" : "docker"
}
<commit_msg>Update spec.json<commit_after>{
  "name" : "Create Expression Matrix",
  "ver" : "1.0.1",
  "authors" : [ ],
  "contact" : "<EMAIL>",
  "visible" : true,
  "categories" : ["active"],
  "widgets" : {
    "input" : null,
    "output" : "kbaseExpressionMatrix" 
  },
  "parameters" : [ {
    "id" : "ws_cuffdiff_id",
    "optional" : false,
    "advanced" : false,
    "allow_multiple" : false,
    "default_values" : [ "" ],
    "field_type" : "text",
    "text_options" : {
      "valid_ws_types" : ["KBaseRNASeq.RNASeqCuffdiffdifferentialExpression" ]
    }
  }, {
    "id": "include_replicates",
    "optional":false,
    "advanced":false,
    "allow_multiple":false,
    "default_values":[""],
    "field_type" : "checkbox",
    "checkbox_options":{
      "checked_value": 1,
      "unchecked_value": 0
    }
  }, {
    "id" : "ws_expression_matrix_id",
    "optional" : false,
    "advanced" : false,
    "allow_multiple" : false,
    "default_values" : [ "" ],
    "field_type" : "text",
    "text_options" : {
      "valid_ws_types" : [ "KBaseFeatureValues.ExpressionMatrix" ],
      "is_output_name":true
    } 
 } ],
  "behavior" : {
    "service-mapping" : {
    "url" : "",
    "name" : "kb_cummerbund",
    "method" : "create_expression_matrix",
    "input_mapping" : [
        {
          "narrative_system_variable": "workspace",
          "target_property": "workspace_name"
        },
        {
          "input_parameter": "ws_cuffdiff_id",
          "target_property": "ws_cuffdiff_id"
        },
        {
          "input_parameter": "include_replicates",
          "target_property": "include_replicates"
        },
        {
          "input_parameter": "ws_expression_matrix_id",
          "target_property": "ws_expression_matrix_id"
       }
    ],
    "output_mapping": [
	{
          "input_parameter": "ws_expression_matrix_id",
          "target_property": "expressionMatrixID"
        },
        {
          "narrative_system_variable": "workspace",
          "target_property": "workspaceID"
        },
	{
	 "service_method_output_path": [0],
         "target_property": "create_expression_matrix"
	}
      ]
    }
  },
  "job_id_output_field" : "docker"
}

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