<commit_before>{stdenv, fetchurl, jre, unzip, makeWrapper}:

stdenv.mkDerivation rec {
  name = "snpeff-${version}";
  version = "4.3i";

  src = fetchurl {
    url = "mirror://sourceforge/project/snpeff/snpEff_latest_core.zip";
    sha256 = "0i1slg201c8yjfr4wrg4xcgzwi0c8b9l3fb1i73fphq6q6zdblzb";
  };

  buildInputs = [ unzip jre makeWrapper ];

  installPhase = ''
    mkdir -p $out/libexec/snpeff
    cp *.jar *.config $out/libexec/snpeff

    mkdir -p $out/bin
    makeWrapper ${jre}/bin/java $out/bin/snpeff --add-flags "-jar $out/libexec/snpeff/snpEff.jar"
    makeWrapper ${jre}/bin/java $out/bin/snpsift --add-flags "-jar $out/libexec/snpeff/SnpSift.jar"
  '';

  meta = with stdenv.lib; {
    description = "Genetic variant annotation and effect prediction toolbox.";
    license = licenses.lgpl3;
    homepage = http://snpeff.sourceforge.net/;
    maintainers = with maintainers; [ jbedo ];
    platforms = platforms.all;
  };

}<commit_msg>snpeff: 4.3i -> 4.3p<commit_after>{stdenv, fetchurl, jre, unzip, makeWrapper}:

stdenv.mkDerivation rec {
  name = "snpeff-${version}";
  version = "4.3p";

  src = fetchurl {
    url = "mirror://sourceforge/project/snpeff/snpEff_v4_3p_core.zip";
    sha256 = "1xb3k0yxd634znw2q083ligm2ww4p6v64041r9sdy3930lhjvxb1";
  };

  buildInputs = [ unzip jre makeWrapper ];

  sourceRoot = "snpEff";

  installPhase = ''
    mkdir -p $out/libexec/snpeff
    cp *.jar *.config $out/libexec/snpeff

    mkdir -p $out/bin
    makeWrapper ${jre}/bin/java $out/bin/snpeff --add-flags "-jar $out/libexec/snpeff/snpEff.jar"
    makeWrapper ${jre}/bin/java $out/bin/snpsift --add-flags "-jar $out/libexec/snpeff/SnpSift.jar"
  '';

  meta = with stdenv.lib; {
    description = "Genetic variant annotation and effect prediction toolbox.";
    license = licenses.lgpl3;
    homepage = http://snpeff.sourceforge.net/;
    maintainers = with maintainers; [ jbedo ];
    platforms = platforms.all;
  };

}
{'fraction_non_alphanumeric': 0.14617768595041322, 'fraction_numerical': 0.030475206611570247, 'mean_word_length': 3.4123006833712983, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 4, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3950195', 'n_tokens_mistral': 806, 'n_tokens_neox': 765, 'n_words': 134}