<commit_before># Galaxy - DESeq2
#
# VERSION       0.1

FROM bgruening/galaxy-stable:dev

MAINTAINER <NAME>, <EMAIL>

ENV GALAXY_CONFIG_BRAND DESeq2

WORKDIR /galaxy-central

RUN install-repository "--url http://testtoolshed.g2.bx.psu.edu/ -o iuc --name package_deseq2_1_6_1"
RUN install-repository "--url http://testtoolshed.g2.bx.psu.edu/ -o bgruening --name deseq2"
RUN install-repository "--url http://testtoolshed.g2.bx.psu.edu/ -o lparsons --name htseq_count"

# Mark folders as imported from the host.
VOLUME ["/export/", "/data/", "/var/lib/docker"]

# Expose port 80 (webserver), 21 (FTP server), 8800 (Proxy), 9001 (Galaxy report app)
EXPOSE :80
EXPOSE :21
EXPOSE :8800
EXPOSE :9001
# 8000 is the standard SimpleHTTPServer Server port from python
EXPOSE :8000

# Autostart script that is invoked during container start
CMD ["/usr/bin/startup"]<commit_msg>enable TTS installation<commit_after># Galaxy - DESeq2
#
# VERSION       0.1

FROM bgruening/galaxy-stable:dev

MAINTAINER <NAME>, <EMAIL>

ENV GALAXY_CONFIG_BRAND DESeq2

# Enable TTS installation
ENV GALAXY_CONFIG_TOOL_SHEDS_CONFIG_FILE $GALAXY_HOME/tool_sheds_conf.xml

WORKDIR /galaxy-central

RUN install-repository \
    "--url http://testtoolshed.g2.bx.psu.edu/ -o bgruening --name deseq2" \
    "--url http://testtoolshed.g2.bx.psu.edu/ -o lparsons --name htseq_count"

# Mark folders as imported from the host.
VOLUME ["/export/", "/data/", "/var/lib/docker"]

# Expose port 80 (webserver), 21 (FTP server), 8800 (Proxy), 9001 (Galaxy report app)
EXPOSE :80
EXPOSE :21
EXPOSE :8800
EXPOSE :9001
# 8000 is the standard SimpleHTTPServer Server port from python
EXPOSE :8000

# Autostart script that is invoked during container start
CMD ["/usr/bin/startup"]
{'fraction_non_alphanumeric': 0.12203585887796414, 'fraction_numerical': 0.04800462695199537, 'mean_word_length': 4.1335311572700295, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 7, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 1}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '5866623', 'n_tokens_mistral': 690, 'n_tokens_neox': 628, 'n_words': 181}