<commit_before>//(c) 2016 by Authors
//This file is a part of ABruijn program.
//Released under the BSD license (see LICENSE file)

#include <deque>

#include "graph_processing.h"
#include "../common/logger.h"
#include "../common/config.h"
#include "../common/utils.h"

//a helper function that calls
//all other simplification procedures
void GraphProcessor::simplify()
{
	//this->trimTips();
	this->condenceEdges();
	this->fixChimericJunctions();
	this->collapseBulges();
	this->condenceEdges();
	//this->trimTips();
}<commit_msg>fixed bug with self-complement unbranching paths<commit_after>//(c) 2016 by Authors
//This file is a part of ABruijn program.
//Released under the BSD license (see LICENSE file)

#include <deque>

#include "graph_processing.h"
#include "../common/logger.h"
#include "../common/config.h"
#include "../common/utils.h"

//a helper function that calls
//all other simplification procedures
void GraphProcessor::simplify()
{
	//this->trimTips();
	this->fixChimericJunctions();
	this->condenceEdges();
	this->collapseBulges();
	this->condenceEdges();
	//this->trimTips();
}
{'fraction_non_alphanumeric': 0.16287534121929026, 'fraction_numerical': 0.007279344858962694, 'mean_word_length': 4.641025641025641, 'pattern_counts': {'":': 0, '<': 5, '<?xml version=': 0, '>': 17, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '234124', 'n_tokens_mistral': 367, 'n_tokens_neox': 353, 'n_words': 99}