<commit_before><commit_msg>Add BBDuk 'stats' output<commit_after>#File	sample1.R1.fastq.gz	sample1.R2.fastq.gz
#Total	53746
#Matched	1151	2.14155%
#Name	Reads	ReadsPct
Reverse_adapter	518	0.96379%
TruSeq_Adapter_Index_1_6	149	0.27723%
pcr_dimer	145	0.26979%
TruSeq_Universal_Adapter	124	0.23071%
PCR_Primers	117	0.21769%
Nextera_LMP_Read2_External_Adapter	60	0.11164%
PhiX_read2_adapter	22	0.04093%
PhiX_read1_adapter	7	0.01302%
RNA_PCR_Primer_Index_27_(RPI27)	3	0.00558%
TruSeq_Adapter_Index_6	2	0.00372%
I5_Adapter_Nextera	1	0.00186%
I5_Nextera_Transposase_2	1	0.00186%
RNA_PCR_Primer_(RP1)_part_#_15013198	1	0.00186%
TruSeq_Adapter_Index_9	1	0.00186%
{'fraction_non_alphanumeric': 0.08116385911179173, 'fraction_numerical': 0.2327718223583461, 'mean_word_length': 7.4935064935064934, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '3215684', 'n_tokens_mistral': 407, 'n_tokens_neox': 330, 'n_words': 56}