<commit_before>.. CATMAID documentation master file, created by
   sphinx-quickstart on Sat Dec 10 20:48:29 2011.
Welcome to CATMAID
==================
The **C** ollaborative **A** nnotation **T** oolkit for **M** assive **A** mounts of **I** mage **D** ata

**Features:**

- fast terabyte-scale image data browsing
- client/server architecture
- neuron reconstruction features
- overlay display
- multiple stack display
- collaborative annotation
- Neuron Catalog
- WebGL neuron viewer

Contents
--------

.. toctree::
   :maxdepth: 2

   introduction
   screenshots
   tracing_neurons
   othertools
   
   installation
   djangoinstall
   dbmigration

Who uses it?
------------
Running instances around the globe

- `Swiss INCF node <http://incf.ini.uzh.ch/catmaid/>`_
- `Open Connectome Project <http://openconnectomeproject.org>`_
- `INCF CATMAID-in-a-box <https://github.com/wholeslide/catmaid_in_a_box>`_
- `MPI-CBG, Dresden <http://fly.mpi-cbg.de/dev/>`_

Publications
------------
- `CATMAID: collaborative annotation toolkit for massive amounts of image data <http://bioinformatics.oxfordjournals.org/content/25/15/1984.abstract>`_

Funding
-------
- INCF Swiss Node, Zürich, Switzerland
- <NAME>, MPI-CBG, Dresden, Germany
- <NAME>, Uni/ETH, Zürich, Switzerland
..  INI, JFRC

Developers
----------
- <NAME>
- <NAME>
- <NAME>
- <NAME>

see `commit log statistics <https://github.com/acardona/CATMAID/contributors>`_<commit_msg>DOC: Update link and TOC level<commit_after>.. CATMAID documentation master file, created by
   sphinx-quickstart on Sat Dec 10 20:48:29 2011.
Welcome to CATMAID
==================
The **C** ollaborative **A** nnotation **T** oolkit for **M** assive **A** mounts of **I** mage **D** ata

**Features:**

- fast terabyte-scale image data browsing
- client/server architecture
- neuron reconstruction features
- overlay display
- multiple stack display
- collaborative annotation
- Neuron Catalog
- WebGL neuron viewer

Contents
--------

.. toctree::
   :maxdepth: 1

   introduction
   screenshots
   tracing_neurons
   othertools
   
   installation
   djangoinstall
   dbmigration

Who uses it?
------------
Running instances around the globe

- `Swiss INCF node <http://incf.ini.uzh.ch/catmaid/>`_
- `Open Connectome Project <http://openconnectomeproject.org>`_
- `INCF CATMAID-in-a-box <https://github.com/wholeslide/catmaid_in_a_box>`_
- `Fly MPI CBG Supplementary Material, Dresden <http://fly.mpi-cbg.de/~saalfeld/catmaid/supplementary.html>`_

Publications
------------
- `CATMAID: collaborative annotation toolkit for massive amounts of image data <http://bioinformatics.oxfordjournals.org/content/25/15/1984.abstract>`_

Funding
-------
- INCF Swiss Node, Zürich, Switzerland
- <NAME>, MPI-CBG, Dresden, Germany
- <NAME>, Uni/ETH, Zürich, Switzerland
..  INI, JFRC

Developers
----------
- <NAME>
- <NAME>
- <NAME>
- <NAME>

see `commit log statistics <https://github.com/acardona/CATMAID/contributors>`_
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{'dir': 'git-commits-cleaned', 'id': '2316617', 'n_tokens_mistral': 1071, 'n_tokens_neox': 948, 'n_words': 264}