<commit_before>class Libpll < Formula
  desc "PLL is a C library for doing phylogenetics"
  homepage "http://www.libpll.org/"
  url "http://www.libpll.org/Downloads/libpll-1.0.11.tar.gz"
  sha256 "1fb7af4d09bb935b0cc6c4d0ddff21a29ceff38c401328543d1639299ea31ec1"
  head "https://git.assembla.com/phylogenetic-likelihood-library.git"
  # tag "bioinformatics"
  # doi "10.1093/sysbio/syu084"

  bottle do
    cellar :any
    sha256 "6d4886d7286af7ba1c7f4615bd1aab9af0a87a72d72767d8659b836649059a10" => :yosemite
    sha256 "0f9f835ab42cace506d68c8e90e47d5a558a0387297672592a1736057666c6bd" => :mavericks
    sha256 "7b0a93079fdbb1f063c940cb054dbba66267c06e6238fa40b5d96bbe67d77201" => :mountain_lion
  end

  option "without-test", "Disable build-time checking (not recommended)"
  deprecated_option "without-check" => "without-test"

  depends_on "libtool" => :build
  depends_on "automake" => :build
  depends_on "autoconf" => :build

  def install
    system "autoreconf", "-fvi"
    system "./configure", "--disable-dependency-tracking",<commit_msg>libpll: update 1.0.11 bottle.<commit_after>class Libpll < Formula
  desc "PLL is a C library for doing phylogenetics"
  homepage "http://www.libpll.org/"
  url "http://www.libpll.org/Downloads/libpll-1.0.11.tar.gz"
  sha256 "1fb7af4d09bb935b0cc6c4d0ddff21a29ceff38c401328543d1639299ea31ec1"
  head "https://git.assembla.com/phylogenetic-likelihood-library.git"
  # tag "bioinformatics"
  # doi "10.1093/sysbio/syu084"

  bottle do
    cellar :any
    sha256 "673e8b127b98f71bce9b864f7457ca499d9a205d2fe5c0c1fbb7e29a764634f8" => :sierra
    sha256 "6bb3ef91248dc9c94d4d27eb065d362780200f1fe79a8f6e8e07e020d52c80f3" => :el_capitan
    sha256 "991e9528193e5fabb3911b6262a973ebf448a5625bcdde56b7e736329fe55798" => :yosemite
  end

  option "without-test", "Disable build-time checking (not recommended)"
  deprecated_option "without-check" => "without-test"

  depends_on "libtool" => :build
  depends_on "automake" => :build
  depends_on "autoconf" => :build

  def install
    system "autoreconf", "-fvi"
    system "./configure", "--disable-dependency-tracking",
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