<commit_before>package:
  name: transdecoder
  version: "2.1.0"

build:
  number: 0
  skip: True # [osx]

source:
  fn: transdecoder-2.1.0.tar.gz
  url: https://github.com/TransDecoder/TransDecoder/archive/v2.1.0.tar.gz
  md5: f86c688e13ced3cc51fed3d508a2ea05

requirements:
  run:
    - libgcc >=4.9.1 # GOMP_4.0 requirement

about:
  home: https://transdecoder.github.io/
  license: Broad Institute 
  summary: TransDecoder identifies candidate coding regions within transcript 
           sequences, such as those generated by de novo RNA-Seq transcript 
           assembly using Trinity, or constructed based on RNA-Seq alignments 
           to the genome using Tophat and Cufflinks.

test:
  commands:
    #- 'TransDecoder.Predict -h 2>&1 | grep USAGE' 
    #- 'TransDecoder.LongOrfs -h 2>&1 | grep USAGE'<commit_msg>.. but build should depend on gcc<commit_after>package:
  name: transdecoder
  version: "2.1.0"

build:
  number: 0
  skip: True # [osx]

source:
  fn: transdecoder-2.1.0.tar.gz
  url: https://github.com/TransDecoder/TransDecoder/archive/v2.1.0.tar.gz
  md5: f86c688e13ced3cc51fed3d508a2ea05

requirements:
  build:
    - gcc
  run:
    - libgcc >=4.9.1 # GOMP_4.0 requirement

about:
  home: https://transdecoder.github.io/
  license: Broad Institute 
  summary: TransDecoder identifies candidate coding regions within transcript 
           sequences, such as those generated by de novo RNA-Seq transcript 
           assembly using Trinity, or constructed based on RNA-Seq alignments 
           to the genome using Tophat and Cufflinks.

test:
  commands:
    #- 'TransDecoder.Predict -h 2>&1 | grep USAGE' 
    #- 'TransDecoder.LongOrfs -h 2>&1 | grep USAGE'
{'fraction_non_alphanumeric': 0.0983995257854179, 'fraction_numerical': 0.04386484884410195, 'mean_word_length': 3.0871670702179177, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 9, 'https://': 4, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '902378', 'n_tokens_mistral': 623, 'n_tokens_neox': 558, 'n_words': 159}