<commit_before>package beast.evolution.substitutionmodel;

import beast.core.Description;
import beast.evolution.datatype.Aminoacid;
import beast.evolution.datatype.DataType;
import beast.math.statistic.DiscreteStatistics;

@Description("WAG model of amino acid evolution by " +
        "<NAME> and <NAME>. 2000. Bioinformatics ?.")

public class WAG extends EmpiricalSubstitutionModel {

    @Override
    double[][] getEmpiricalRates() {
        double[][] rate = new double[20][20];

        // Q matrix from Beast 1
        rate[0][1] = 0.610810;
        rate[0][2] = 0.569079;
        rate[0][3] = 0.821500;
        rate[0][4] = 1.141050;<commit_msg>Completed reference<commit_after>package beast.evolution.substitutionmodel;

import beast.core.Description;
import beast.evolution.datatype.Aminoacid;
import beast.evolution.datatype.DataType;
import beast.math.statistic.DiscreteStatistics;

@Description("WAG model of amino acid evolution by " +
        "<NAME> and <NAME>. 2001. Molecular biology and evolution 18.5 (2001): 691-699 ")

public class WAG extends EmpiricalSubstitutionModel {

    @Override
    double[][] getEmpiricalRates() {
        double[][] rate = new double[20][20];

        // Q matrix from Beast 1
        rate[0][1] = 0.610810;
        rate[0][2] = 0.569079;
        rate[0][3] = 0.821500;
        rate[0][4] = 1.141050;
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