<commit_before>geneGIS 
=======

A Python Add-in and ArcGIS toolbox for manipulating individual-based genetic records in a geographic context.

[http://genegis.org](http://genegis.org)


Installation
------------

Use the [install page](http://genegis.org/install.html) to get a packaged release.

To get the latest source, clone this repository, and run `makeaddin.py` to create an
installable genegis.esriaddin file.

Tools
-----

import:
 - parse SRGD formatted CSV files into a Geodatabase Feature Class

manipulation:
 - select and filter data based on spatial and attribute queries
 - extract raster values at encounter locations
 
geographic analysis:
 - compute accurate geodesic distance matricies
 - generate pairwise geodesic segements between samples
 
genetic analysis:
 - use SPAGeDi (included) to compute a variety of genetic tests, such as F_st.

export:
 - export to GenAlEx
 - export to Genepop
 - export to SPAGeDi
 - export to SRGD formatted CSV files for use with the Shepard Project<commit_msg>include submodule checkout in source code checkout instructions.<commit_after>geneGIS 
=======

A Python Add-in and ArcGIS toolbox for manipulating individual-based genetic records in a geographic context.

[http://genegis.org](http://genegis.org)


Installation
------------

Use the [install page](http://genegis.org/install.html) to get a packaged release.

To get the latest source, clone this repository, and run `makeaddin.py` to create an
installable genegis.esriaddin file.

Tools
-----

import:
 - parse SRGD formatted CSV files into a Geodatabase Feature Class

manipulation:
 - select and filter data based on spatial and attribute queries
 - extract raster values at encounter locations
 
geographic analysis:
 - compute accurate geodesic distance matricies
 - generate pairwise geodesic segements between samples
 
genetic analysis:
 - use SPAGeDi (included) to compute a variety of genetic tests, such as `F_st`.

export:
 - export to GenAlEx
 - export to Genepop
 - export to SPAGeDi
 - export to SRGD formatted CSV files for use with the Shepard Project

Building from Source
--------------------

```
git clone https://github.com/genegis/genegis.git
cd genegis
git submodule update --init --recursive
```
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