<commit_before><aspects>
  <aspect name="Genomics">
    <subtitle>Genome annotation</subtitle>
    <icon-image>model/images/genomics.gif</icon-image>
    <large-image>model/images/genomics.gif</large-image>
    <intro-text>
      The gene structure and other genome annotation in FlyMine are provided by
      a variety of source databases.  In most cases FlyMine includes
      all genome features that have chromosomal locations (e.g. genes and repeat regions).
    </intro-text>
    <tile-name>model/genomics.jsp</tile-name>
    <aspect-source name="FlyBase" url="http://www.flybase.org"/>
    <aspect-source name="Ensembl" url="http://www.ensembl.org/Anopheles_gambiae/"/>
  </aspect>


  <aspect name="Comparative Genomics">
    <subtitle>Orthologues and paralogues</subtitle>
    <icon-image>model/images/comparativeGenomics.png</icon-image>
    <large-image>model/images/comparativeGenomics.png</large-image>
    <intro-text>
      Orthologues and Paralogues.  Orthologues are equivalent genes in
      different species that evolved from a common ancestor by
      speciation.  Paralogues are genes from the same homologous
      superfamily found in another part of the genome of a particular
      taxon. Paralogues are the result of gene duplication.
    </intro-text>
    <tile-name>model/inparanoid.jsp</tile-name>
    <aspect-source name="Inparanoid" url="http://inparanoid.cgb.ki.se/"/>
  </aspect>

  <aspect name="Proteins">
    <subtitle>Protein and&lt;br/&gt;proteomics data</subtitle>
    <icon-image>model/images/proteins.png</icon-image>
    <large-image>model/images/proteins.png</large-image>
    <intro-text>
      Protein annotation, including family and domain annotation, from UniProt
      and InterPro.
    </intro-text>
    <tile-name>model/proteins.jsp</tile-name>
    <aspect-source name="InterPro" url="http://www.ebi.ac.uk/interpro"/>
    <aspect-source name="UniProt" url="http://www.uniprot.org"/>
  </aspect>

  <aspect name="Protein Structure">
    <subtitle>3-D protein structures</subtitle>
    <icon-image>model/images/pstructure.gif</icon-image>
    <large-image>model/images/pstructure.gif</large-image>
    <intro-text>
      3-D protein structures from the Mizuguchi lab.
    </intro-text><commit_msg>updated inparanoid link.<commit_after><aspects>
  <aspect name="Genomics">
    <subtitle>Genome annotation</subtitle>
    <icon-image>model/images/genomics.gif</icon-image>
    <large-image>model/images/genomics.gif</large-image>
    <intro-text>
      The gene structure and other genome annotation in FlyMine are provided by
      a variety of source databases.  In most cases FlyMine includes
      all genome features that have chromosomal locations (e.g. genes and repeat regions).
    </intro-text>
    <tile-name>model/genomics.jsp</tile-name>
    <aspect-source name="FlyBase" url="http://www.flybase.org"/>
    <aspect-source name="Ensembl" url="http://www.ensembl.org/Anopheles_gambiae/"/>
  </aspect>


  <aspect name="Comparative Genomics">
    <subtitle>Orthologues and paralogues</subtitle>
    <icon-image>model/images/comparativeGenomics.png</icon-image>
    <large-image>model/images/comparativeGenomics.png</large-image>
    <intro-text>
      Orthologues and Paralogues.  Orthologues are equivalent genes in
      different species that evolved from a common ancestor by
      speciation.  Paralogues are genes from the same homologous
      superfamily found in another part of the genome of a particular
      taxon. Paralogues are the result of gene duplication.
    </intro-text>
    <tile-name>model/inparanoid.jsp</tile-name>
    <aspect-source name="Inparanoid" url="http://inparanoid.sbc.su.se/cgi-bin/index.cgi"/>
  </aspect>

  <aspect name="Proteins">
    <subtitle>Protein and&lt;br/&gt;proteomics data</subtitle>
    <icon-image>model/images/proteins.png</icon-image>
    <large-image>model/images/proteins.png</large-image>
    <intro-text>
      Protein annotation, including family and domain annotation, from UniProt
      and InterPro.
    </intro-text>
    <tile-name>model/proteins.jsp</tile-name>
    <aspect-source name="InterPro" url="http://www.ebi.ac.uk/interpro"/>
    <aspect-source name="UniProt" url="http://www.uniprot.org"/>
  </aspect>

  <aspect name="Protein Structure">
    <subtitle>3-D protein structures</subtitle>
    <icon-image>model/images/pstructure.gif</icon-image>
    <large-image>model/images/pstructure.gif</large-image>
    <intro-text>
      3-D protein structures from the Mizuguchi lab.
    </intro-text>
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