<commit_before>{
    "ver": "0.0.1",
    "authors": [
        "dylan"
    ],
    "contact": "<EMAIL>",
    "visible": true,
    "categories": ["active","sequence"],
    "widgets": {
        "input": null,
        "output": "no-display"
    },
    "parameters": [ 
        {
            "id": "input_many_ref",
            "optional": false,
            "advanced": false,
            "allow_multiple": false,
            "default_values": [ "" ],
            "field_type": "text",
            "text_options": {
                "valid_ws_types": [ "KBaseCollections.FeatureSet","KBaseGenomes.Genome","KBaseSearch.GenomeSet" ]
            }
        },
        {
            "id": "output_filtered_name",
            "optional": false,
            "advanced": false,
            "allow_multiple": false,
            "default_values": [ "" ],
            "field_type": "text",
            "text_options": {
                "valid_ws_types": [ "KBaseCollections.FeatureSet" ],
		"is_output_name": true		  
            }
        },
        {
            "id": "coalesce_output",
            "optional": false,
            "advanced": false,
            "allow_multiple": false,
            "default_values": [ "1" ],
            "field_type": "dropdown",
	    "dropdown_options": {
                "options": [
                                {
                                        "value": "0",
                                        "display": "Separate by HMM",
                                        "id": "sep",
                                        "ui-name": "sep"
                                },
                                {
                                        "value": "1",
                                        "display": "Merge all hits",
                                        "id": "merge",
                                        "ui-name": "merge"
                                }
			]					    
            }
        },
        {
            "id": "e_value",
            "optional": false,
            "advanced": false,
            "allow_multiple": false,
            "default_values": [ ".001" ],
            "field_type": "text",
            "text_options": {
                "validate_as": "float",
                "min_integer" : 0
            }
        },
        {
            "id": "bitscore",
            "optional": true,
            "advanced": true,
            "allow_multiple": false,
            "default_values": [ "100" ],
            "field_type": "text",
            "text_options": {
                "validate_as": "float",
                "min_integer" : 25
            }
        },
        {
            "id": "maxaccepts",
            "optional": true,
            "advanced": true,
            "allow_multiple": false,
            "default_values": [ "1000" ],
            "field_type": "text",
            "text_options": {
                "validate_as": "int",
                "min_integer" : 0
            }
        }
    ],
    "behavior": {
        "service-mapping": {
            "url": "",
            "name": "kb_hmmer",
            "method": "HMMER_Local_MSA_Group_Search",
            "input_mapping": [
                {
                    "narrative_system_variable": "workspace",
                    "target_property": "workspace_name"
                },
                {
                    "input_parameter": "input_many_ref",
                    "target_property": "input_many_ref",
		    "target_type_transform": "resolved-ref"
                },
                {
                    "input_parameter": "output_filtered_name",
                    "target_property": "output_filtered_name"
                },
                {
                    "input_parameter": "coalesce_output",
                    "target_property": "coalesce_output"
                },
                {
                    "input_parameter": "e_value",
                    "target_property": "e_value"
                },
                {
                    "input_parameter": "bitscore",
                    "target_property": "bitscore"
                },
                {
                    "input_parameter": "maxaccepts",
                    "target_property": "maxaccepts"
                }
            ],
            "output_mapping": [
                {
                    "narrative_system_variable": "workspace",
                    "target_property": "workspace_name"
                },
                {
                    "service_method_output_path": [0, "report_name"],
                    "target_property": "report_name"
                },
                {
                    "service_method_output_path": [0, "report_ref"],
                    "target_property": "report_ref"
                },
                {
		    "constant_value": "16",
                    "target_property": "report_window_line_height"
                }
            ]
        }
    },
    "job_id_output_field": "docker"
}<commit_msg>free int for coalesce_output<commit_after>{
    "ver": "0.0.1",
    "authors": [
        "dylan"
    ],
    "contact": "<EMAIL>",
    "visible": true,
    "categories": ["active","sequence"],
    "widgets": {
        "input": null,
        "output": "no-display"
    },
    "parameters": [ 
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            "id": "input_many_ref",
            "optional": false,
            "advanced": false,
            "allow_multiple": false,
            "default_values": [ "" ],
            "field_type": "text",
            "text_options": {
                "valid_ws_types": [ "KBaseCollections.FeatureSet","KBaseGenomes.Genome","KBaseSearch.GenomeSet" ]
            }
        },
        {
            "id": "output_filtered_name",
            "optional": false,
            "advanced": false,
            "allow_multiple": false,
            "default_values": [ "" ],
            "field_type": "text",
            "text_options": {
                "valid_ws_types": [ "KBaseCollections.FeatureSet" ],
		"is_output_name": true		  
            }
        },
        {
            "id": "coalesce_output",
            "optional": false,
            "advanced": false,
            "allow_multiple": false,
            "default_values": [ 1 ],
            "field_type": "dropdown",
	    "dropdown_options": {
                "options": [
                                {
                                        "value": 0,
                                        "display": "Separate by HMM",
                                        "id": "sep",
                                        "ui-name": "sep"
                                },
                                {
                                        "value": 1,
                                        "display": "Merge all hits",
                                        "id": "merge",
                                        "ui-name": "merge"
                                }
			]					    
            }
        },
        {
            "id": "e_value",
            "optional": false,
            "advanced": false,
            "allow_multiple": false,
            "default_values": [ ".001" ],
            "field_type": "text",
            "text_options": {
                "validate_as": "float",
                "min_integer" : 0
            }
        },
        {
            "id": "bitscore",
            "optional": true,
            "advanced": true,
            "allow_multiple": false,
            "default_values": [ "100" ],
            "field_type": "text",
            "text_options": {
                "validate_as": "float",
                "min_integer" : 25
            }
        },
        {
            "id": "maxaccepts",
            "optional": true,
            "advanced": true,
            "allow_multiple": false,
            "default_values": [ "1000" ],
            "field_type": "text",
            "text_options": {
                "validate_as": "int",
                "min_integer" : 0
            }
        }
    ],
    "behavior": {
        "service-mapping": {
            "url": "",
            "name": "kb_hmmer",
            "method": "HMMER_Local_MSA_Group_Search",
            "input_mapping": [
                {
                    "narrative_system_variable": "workspace",
                    "target_property": "workspace_name"
                },
                {
                    "input_parameter": "input_many_ref",
                    "target_property": "input_many_ref",
		    "target_type_transform": "resolved-ref"
                },
                {
                    "input_parameter": "output_filtered_name",
                    "target_property": "output_filtered_name"
                },
                {
                    "input_parameter": "coalesce_output",
                    "target_property": "coalesce_output"
                },
                {
                    "input_parameter": "e_value",
                    "target_property": "e_value"
                },
                {
                    "input_parameter": "bitscore",
                    "target_property": "bitscore"
                },
                {
                    "input_parameter": "maxaccepts",
                    "target_property": "maxaccepts"
                }
            ],
            "output_mapping": [
                {
                    "narrative_system_variable": "workspace",
                    "target_property": "workspace_name"
                },
                {
                    "service_method_output_path": [0, "report_name"],
                    "target_property": "report_name"
                },
                {
                    "service_method_output_path": [0, "report_ref"],
                    "target_property": "report_ref"
                },
                {
		    "constant_value": "16",
                    "target_property": "report_window_line_height"
                }
            ]
        }
    },
    "job_id_output_field": "docker"
}
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