<commit_before><commit_msg>tour 5<commit_after>tourId = 'tour5';

var tour = {
	id: 'tour5',
	steps: [
       {
	title: 'Welcome to LIS',
	content: "Let's start at the homepage",
	target: 'site-name',
	placement: 'bottom',
	multipage: true,
	onNext: function() {
		window.location='/home';}
     },{
	title: 'Proteins',
	content: 'We will be starting from the Protein Domains tool. We want to find out more about the domain LysM RLK, a protein that is proposed to control bacterial entry. This is a useful element in the study of the symbiotic relationships of legumes with nitrogen-fixing bacteria.',
	target: '#proteinid',
	placement: 'bottom',
	multipage: true,
	onNext: function() {
		window.location='/search/protein_domains';}
     },{
	title: 'Starting Goal',
	content: "We will input the IPR term, IPR018392, from our gene medtr.Medtr8g078300, which codes for LysM RLK4 to see where it is present in other legume species.",
	target: '#edit-iprterm',
	placement: 'bottom',
	multipage: true,
	onNext: function() {
		window.location='/search/protein_domains?IPRterm=IPR018392';}
     },{
	title: 'Protein Tour: More Genes',
	content: 'We will look for occurances of this domain in Lotus Japonicus.',
	target: jQuery("[title~='Lotja']")[0],
	placement: 'top',
	multipage: true,
	onNext: function() {
		window.location='/search/gene?abbreviation=lotja&domains=PF01476';}
     },{
	title: 'Protein Tour: Lotja genes',
	content: 'Here you can pick which combination of proteins in the lotus you would like to further inspect.',
	target: jQuery('.views-field-description')[0],
	placement: 'top'
     },{
	title: 'Protein Tour: Genes',
	content: 'Clicking on the gene will take you to the jBrowse page',
	target: jQuery("[title~='Name']")[0],
	placement: 'top'
     },{
	title: 'Protein Tour: Basket',
	content: 'By adding the gene to the basket you can access its mRNA and polypeptide sequence.',
	target: jQuery("[href='/basket/add/4468488/nojs/?destination=search/gene%3Fabbreviation%3Dlotja%26domains%3DPF01476']")[0],
	placement: 'top',
	xOffset: '-200',
	arrowOffset: '230'
     },{
	title: 'Protein Tour: Phylotree',
	content: 'The phytozome link will take you to the phylogeny tree rooted on the PF01476 domain',
	target: jQuery("[href='/chado_gene_phylotree_v2/Lj0g3v0306419']")[0],
	placement: 'top',
	multipage: true,
	onNext: function() {
		window.location='/chado_phylotree/phytozome_10_2.59131567?hilite_node=lotja.Lj0g3v0306419.1';}
     },{
	title: 'Protein Tour: Gene Tree',
	dynamicContent: 'Here is the gene in a phylogenetic context.',
	dynamicTarget: function() {
		return jQuery('.hilite-node')[0];},
	content: 'Please wait while page loads...',
	target: 'site-name',
	placement: 'right',
	yOffset: '-19'
     }


]}
{'fraction_non_alphanumeric': 0.14139568871026673, 'fraction_numerical': 0.034709535988308365, 'mean_word_length': 4.788583509513742, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '4461882', 'n_tokens_mistral': 1028, 'n_tokens_neox': 923, 'n_words': 284}