<commit_before>CryptoSite is a computational tool for predicting the location of cryptic
binding sites in proteins and protein complexes.

A [web interface](https://salilab.org/cryptosite/) is also available.

# Usage

Input files:

- param.txt:
  job name
  email address
  chain

- input.pdb:
  input PDB file

- input.seq:
  input sequence in fasta format or just sequence


Run by executing this line:<commit_msg>Add Travis and Codecov badges.<commit_after>[![Build Status](https://travis-ci.org/salilab/cryptosite.svg?branch=master)](https://travis-ci.org/salilab/cryptosite)
[![codecov](https://codecov.io/gh/salilab/cryptosite/branch/master/graph/badge.svg)](https://codecov.io/gh/salilab/cryptosite)

CryptoSite is a computational tool for predicting the location of cryptic
binding sites in proteins and protein complexes.

A [web interface](https://salilab.org/cryptosite/) is also available.

# Usage

Input files:

- param.txt:
  job name
  email address
  chain

- input.pdb:
  input PDB file

- input.seq:
  input sequence in fasta format or just sequence


Run by executing this line:
{'fraction_non_alphanumeric': 0.09918107370336669, 'fraction_numerical': 0.0, 'mean_word_length': 4.238095238095238, 'pattern_counts': {'":': 0, '<': 3, '<?xml version=': 0, '>': 3, 'https://': 6, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 0, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '435411', 'n_tokens_mistral': 370, 'n_tokens_neox': 341, 'n_words': 108}