<commit_before>_id: 93113e00-0c5e-11e8-b653-4f1ed6519c85
metadata:
  author:
    first: Daniel
    last: Wheeler
    email: <EMAIL>
    github_id: wd15
  timestamp: '2 February, 2018'
  summary: >-
    FiPy implementation of benchmark 3a on a 960x960 grid. The shape of the
    dendrite doesn't look exactly like the version in the notebook.
  implementation:
    name: FiPy
    repo:
      url: 'https://gist.github.com/wd15/7e06a3141a6fbf317b1daf39ef1b0fbb'
      version: fc9134b08a9c
    container_url: ''
  hardware:
    cpu_architecture: x86_64
    acc_architecture: none
    parallel_model: serial
    clock_rate: '3.2'
    cores: '1'
    nodes: '1'
benchmark:
  id: 3a
  version: '1'
data:
  - name: run_time
    values:
      - wall_time: '266576'
        sim_time: '1500'
  - name: memory_usage
    values:
      - unit: KB
        value: '2000000'
  - name: free_energy
    url: 'https://ndownloader.figshare.com/files/10420491'
    format:
      type: csv
      parse:
        time: number
        free_energy: number
    description: Free energy versus time
    type: line
    transform:
      - type: formula
        expr: datum.time
        as: x
      - type: formula
        expr: datum.free_energy
        as: 'y'
  - name: solid_fraction
    url: 'https://ndownloader.figshare.com/files/10420491'
    format:
      type: csv
      parse:
        time: number
        solid_fraction: number
    description: Solid fraction versus time
    type: line
    transform:
      - type: formula
        expr: datum.time
        as: x
      - type: formula
        expr: datum.solid_fraction
        as: 'y'
  - name: tip_position
    url: 'https://ndownloader.figshare.com/files/10420491'
    format:
      type: csv
      parse:
        time: number
        tip_position: number
    description: Tip position versus time
    type: line
    transform:
      - type: formula
        expr: datum.time
        as: x
      - type: formula
        expr: datum.tip_position
        as: 'y'
  - name: phase_field_1500
    url: 'https://ndownloader.figshare.com/files/10420488'
    format:
      type: csv
      parse:
        x: number
        'y': number
        phase: number
    description: Entire phase field at t=1500s<commit_msg>Update data link for fipy_3a<commit_after>_id: <PASSWORD>
metadata:
  author:
    first: Daniel
    last: Wheeler
    email: <EMAIL>
    github_id: wd15
  timestamp: '2 February, 2018'
  summary: >-
    FiPy implementation of benchmark 3a on a 960x960 grid. The shape of the
    dendrite doesn't look exactly like the version in the notebook.
  implementation:
    name: FiPy
    repo:
      url: 'https://gist.github.com/wd15/7e06a3141a6fbf317b1daf39ef1b0fbb'
      version: fc9134b08a9c
    container_url: ''
  hardware:
    cpu_architecture: x86_64
    acc_architecture: none
    parallel_model: serial
    clock_rate: '3.2'
    cores: '1'
    nodes: '1'
benchmark:
  id: 3a
  version: '1'
data:
  - name: run_time
    values:
      - wall_time: '266576'
        sim_time: '1500'
  - name: memory_usage
    values:
      - unit: KB
        value: '2000000'
  - name: free_energy
    url: 'https://ndownloader.figshare.com/files/10443456'
    format:
      type: csv
      parse:
        time: number
        free_energy: number
    description: Free energy versus time
    type: line
    transform:
      - type: formula
        expr: datum.time
        as: x
      - type: formula
        expr: datum.free_energy
        as: 'y'
  - name: solid_fraction
    url: 'https://ndownloader.figshare.com/files/10443456'
    format:
      type: csv
      parse:
        time: number
        solid_fraction: number
    description: Solid fraction versus time
    type: line
    transform:
      - type: formula
        expr: datum.time
        as: x
      - type: formula
        expr: datum.solid_fraction
        as: 'y'
  - name: tip_position
    url: 'https://ndownloader.figshare.com/files/10443456'
    format:
      type: csv
      parse:
        time: number
        tip_position: number
    description: Tip position versus time
    type: line
    transform:
      - type: formula
        expr: datum.time
        as: x
      - type: formula
        expr: datum.tip_position
        as: 'y'
  - name: phase_field_1500
    url: 'https://ndownloader.figshare.com/files/10420488'
    format:
      type: csv
      parse:
        x: number
        'y': number
        phase: number
    description: Entire phase field at t=1500s
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