<commit_before>#!/usr/bin/env python

#Copyright (C) 2011 by <NAME> (<EMAIL>)
#
#Released under the MIT license, see LICENSE.txt
import unittest

from cactus.setup.cactus_setupTest import TestCase as setupTest
from cactus.blastAlignment.cactus_alignerTest import TestCase as alignerTest
from cactus.blastAlignment.cactus_batchTest import TestCase as batchTest
from cactus.core.cactus_coreTest import TestCase as coreTest
from cactus.pipeline.cactus_workflowTest import TestCase as workflowTest
from cactus.pipeline.cactus_evolverTest import TestCase as evolverTest
from cactus.baseAlignment.cactus_baseAlignerTest import TestCase as baseAlignerTest
from cactus.phylogeny.cactus_phylogenyTest import TestCase as phylogenyTest
from cactus.faces.cactus_fillAdjacenciesTest import TestCase as adjacenciesTest
from cactus.reference.cactus_referenceTest import TestCase as referenceTest
from cactus.api.allTests import TestCase as aPITest
from cactus.externalTools.threeEdgeConnected.threeEdgeTests import TestCase as threeEdgeTest
from cactus.externalTools.matchGraph.matchGraphTest import TestCase as matchGraphTest
from cactus.externalTools.blossom.blossomTest import TestCase as blossomTest
from cactus.normalisation.cactus_normalisationTest import TestCase as normalisationTest
 
from cactus.shared.test import parseCactusSuiteTestOptions

def allSuites(): 
    allTests = unittest.TestSuite((unittest.makeSuite(threeEdgeTest, 'test'),
                                   unittest.makeSuite(matchGraphTest, 'test'),
                                   unittest.makeSuite(blossomTest, 'test'),
                                   unittest.makeSuite(setupTest, 'test'),
                                   unittest.makeSuite(alignerTest, 'test'),
                                   unittest.makeSuite(batchTest, 'test'),
                                   unittest.makeSuite(coreTest, 'test'),
                                   unittest.makeSuite(workflowTest, 'test'),
                                   unittest.makeSuite(evolverTest, 'test'),
                                   unittest.makeSuite(baseAlignerTest, 'test'),
                                   unittest.makeSuite(phylogenyTest, 'test'),
                                   unittest.makeSuite(adjacenciesTest, 'test'),
                                   unittest.makeSuite(referenceTest, 'test'),
                                   unittest.makeSuite(aPITest, 'test'),
                                   unittest.makeSuite(normalisationTest, 'test')))
    return allTests
        
def main():
    parseCactusSuiteTestOptions()
    <commit_msg>add progressiveTest<commit_after>#!/usr/bin/env python

#Copyright (C) 2011 by <NAME> (<EMAIL>)
#
#Released under the MIT license, see LICENSE.txt
import unittest

from cactus.setup.cactus_setupTest import TestCase as setupTest
from cactus.blastAlignment.cactus_alignerTest import TestCase as alignerTest
from cactus.blastAlignment.cactus_batchTest import TestCase as batchTest
from cactus.core.cactus_coreTest import TestCase as coreTest
from cactus.pipeline.cactus_workflowTest import TestCase as workflowTest
from cactus.pipeline.cactus_evolverTest import TestCase as evolverTest
from cactus.baseAlignment.cactus_baseAlignerTest import TestCase as baseAlignerTest
from cactus.phylogeny.cactus_phylogenyTest import TestCase as phylogenyTest
from cactus.faces.cactus_fillAdjacenciesTest import TestCase as adjacenciesTest
from cactus.reference.cactus_referenceTest import TestCase as referenceTest
from cactus.api.allTests import TestCase as aPITest
from cactus.externalTools.threeEdgeConnected.threeEdgeTests import TestCase as threeEdgeTest
from cactus.externalTools.matchGraph.matchGraphTest import TestCase as matchGraphTest
from cactus.externalTools.blossom.blossomTest import TestCase as blossomTest
from cactus.normalisation.cactus_normalisationTest import TestCase as normalisationTest
from cactus.progressive.cactus_progressiveTest import TestCase as progressiveTest
 
from cactus.shared.test import parseCactusSuiteTestOptions

def allSuites(): 
    allTests = unittest.TestSuite((unittest.makeSuite(threeEdgeTest, 'test'),
                                   unittest.makeSuite(matchGraphTest, 'test'),
                                   unittest.makeSuite(blossomTest, 'test'),
                                   unittest.makeSuite(setupTest, 'test'),
                                   unittest.makeSuite(alignerTest, 'test'),
                                   unittest.makeSuite(batchTest, 'test'),
                                   unittest.makeSuite(coreTest, 'test'),
                                   unittest.makeSuite(workflowTest, 'test'),
                                   unittest.makeSuite(evolverTest, 'test'),
                                   unittest.makeSuite(baseAlignerTest, 'test'),
                                   unittest.makeSuite(phylogenyTest, 'test'),
                                   unittest.makeSuite(adjacenciesTest, 'test'),
                                   unittest.makeSuite(referenceTest, 'test'),
                                   unittest.makeSuite(aPITest, 'test'),
                                   unittest.makeSuite(normalisationTest, 'test'),
                                   unittest.makeSuite(progressiveTest, 'test')))
    return allTests
        
def main():
    parseCactusSuiteTestOptions()
    
{'fraction_non_alphanumeric': 0.06645569620253164, 'fraction_numerical': 0.0014892032762472078, 'mean_word_length': 2.577230359520639, 'pattern_counts': {'":': 0, '<': 7, '<?xml version=': 0, '>': 7, 'https://': 0, 'lorem ipsum': 0, 'www.': 0, 'xml': 0}, 'pii_count': 0, 'substrings_counts': 0, 'word_list_counts': {'cursed_substrings.json': 29, 'profanity_word_list.json': 0, 'sexual_word_list.json': 0, 'zh_pornsignals.json': 0}}
{'dir': 'git-commits-cleaned', 'id': '6758494', 'n_tokens_mistral': 1466, 'n_tokens_neox': 1412, 'n_words': 307}