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Cannot get the config names for the dataset.
Error code: ConfigNamesError
Exception: ImportError
Message: To be able to use bigbio/chem_dis_gene, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response
config_names = get_dataset_config_names(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names
dataset_module = dataset_module_factory(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory
raise e1 from None
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory
return HubDatasetModuleFactoryWithScript(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module
local_imports = _download_additional_modules(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules
raise ImportError(
ImportError: To be able to use bigbio/chem_dis_gene, you need to install the following dependency: bioc.
Please install it using 'pip install bioc' for instance.Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Dataset Card for ChemProt
This is a public release of the ChemDisGene dataset, a collection of biomedical research abstracts annotated with mentions of chemical, disease and gene/gene-product entities, and pairwise relationships between those entities.
Citation Information
@InProceedings{zhang-etal:2022:LREC,
author = {Dongxu Zhang and Sunil Mohan and Michaela Torkar and Andrew McCallum},
title = {A Distant Supervision Corpus for Extracting Biomedical Relationships Between Chemicals, Diseases and Genes},
booktitle = {Proceedings of The 13th Language Resources and Evaluation Conference},
month = {June},
year = {2022},
address = {Marseille, France},
publisher = {European Language Resources Association},
}
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