from __future__ import division, print_function

import numpy as np
from dipy.denoise.denspeed import nlmeans_3d


def nlmeans(arr, sigma, mask=None, patch_radius=1, block_radius=5, rician=True):
    """ Non-local means for denoising 3D and 4D images

    Parameters
    ----------
    arr : 3D or 4D ndarray
        The array to be denoised
    mask : 3D ndarray
    sigma : float
        standard deviation of the noise estimated from the data
    patch_radius : int
        patch size is ``2 x patch_radius + 1``. Default is 1.
    block_radius : int
        block size is ``2 x block_radius + 1``. Default is 5.
    rician : boolean
        If True the noise is estimated as Rician, otherwise Gaussian noise
        is assumed.

    Returns
    -------
    denoised_arr : ndarray
        the denoised ``arr`` which has the same shape as ``arr``.
    """

    if arr.ndim == 3:
        sigma = np.ones(arr.shape, dtype=np.float64) * sigma
        return nlmeans_3d(arr, mask, sigma,
                          patch_radius, block_radius,
                          rician).astype(arr.dtype)

    elif arr.ndim == 4:

        denoised_arr = np.zeros_like(arr)
        sigma = np.ones(arr.shape[:-1], dtype=np.float64) * sigma

        for i in range(arr.shape[-1]):
            denoised_arr[..., i] = nlmeans_3d(arr[..., i],
                                              mask,
                                              sigma,
                                              patch_radius,
                                              block_radius,
                                              rician).astype(arr.dtype)

        return denoised_arr

    else:
        raise ValueError("Only 3D or 4D array are supported!", arr.shape)

from __future__ import division, print_function

import numpy as np
from dipy.denoise.denspeed import nlmeans_3d


def nlmeans(arr, sigma, mask=None, patch_radius=1, block_radius=5, rician=True):
    """ Non-local means for denoising 3D and 4D images

    Parameters
    ----------
    arr : 3D or 4D ndarray
        The array to be denoised
    mask : 3D ndarray
    sigma : float or 3D array
        standard deviation of the noise estimated from the data
    patch_radius : int
        patch size is ``2 x patch_radius + 1``. Default is 1.
    block_radius : int
        block size is ``2 x block_radius + 1``. Default is 5.
    rician : boolean
        If True the noise is estimated as Rician, otherwise Gaussian noise
        is assumed.

    Returns
    -------
    denoised_arr : ndarray
        the denoised ``arr`` which has the same shape as ``arr``.
    """

    if arr.ndim == 3:
        sigma = np.ones(arr.shape, dtype=np.float64) * sigma
        return nlmeans_3d(arr, mask, sigma,
                          patch_radius, block_radius,
                          rician).astype(arr.dtype)

    elif arr.ndim == 4:

        denoised_arr = np.zeros_like(arr)
        sigma = np.ones(arr.shape[:-1], dtype=np.float64) * sigma

        for i in range(arr.shape[-1]):
            denoised_arr[..., i] = nlmeans_3d(arr[..., i],
                                              mask,
                                              sigma,
                                              patch_radius,
                                              block_radius,
                                              rician).astype(arr.dtype)

        return denoised_arr

    else:
        raise ValueError("Only 3D or 4D array are supported!", arr.shape)

Update nlmeans.py