/*
 * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center.
 *
 * This library is distributed in the hope that it will be useful, but WITHOUT
 * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
 * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
 * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
 * obligations to provide maintenance, support, updates, enhancements or
 * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
 * liable to any party for direct, indirect, special, incidental or
 * consequential damages, including lost profits, arising out of the use of this
 * software and its documentation, even if Memorial Sloan-Kettering Cancer
 * Center has been advised of the possibility of such damage.
 */

/*
 * This file is part of cBioPortal.
 *
 * cBioPortal is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/

package org.mskcc.cbio.portal.model;

// Copied to org.cbioportal.model.GeneticProfile.GeneticAlterationType, if you alter this,
// don't forget to change the other one too
public enum GeneticAlterationType {
    MUTATION_EXTENDED,
    FUSION,
    STRUCTURAL_VARIANT,
    COPY_NUMBER_ALTERATION,
    MICRO_RNA_EXPRESSION,
    MRNA_EXPRESSION,
    MRNA_EXPRESSION_NORMALS,
    RNA_EXPRESSION,
    METHYLATION,
    METHYLATION_BINARY,
    PHOSPHORYLATION,
    PROTEIN_LEVEL,
    PROTEIN_ARRAY_PROTEIN_LEVEL,
    PROTEIN_ARRAY_PHOSPHORYLATION,
    GENESET_SCORE;
};

/*
 * Copyright (c) 2015 - 2016 Memorial Sloan-Kettering Cancer Center.
 *
 * This library is distributed in the hope that it will be useful, but WITHOUT
 * ANY WARRANTY, WITHOUT EVEN THE IMPLIED WARRANTY OF MERCHANTABILITY OR FITNESS
 * FOR A PARTICULAR PURPOSE. The software and documentation provided hereunder
 * is on an "as is" basis, and Memorial Sloan-Kettering Cancer Center has no
 * obligations to provide maintenance, support, updates, enhancements or
 * modifications. In no event shall Memorial Sloan-Kettering Cancer Center be
 * liable to any party for direct, indirect, special, incidental or
 * consequential damages, including lost profits, arising out of the use of this
 * software and its documentation, even if Memorial Sloan-Kettering Cancer
 * Center has been advised of the possibility of such damage.
 */

/*
 * This file is part of cBioPortal.
 *
 * cBioPortal is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/

package org.mskcc.cbio.portal.model;

// Copied to org.cbioportal.model.MolecularProfile.GeneticAlterationType, if you alter this,
// don't forget to change the other one too
public enum GeneticAlterationType {
    MUTATION_EXTENDED,
    FUSION,
    STRUCTURAL_VARIANT,
    COPY_NUMBER_ALTERATION,
    MICRO_RNA_EXPRESSION,
    MRNA_EXPRESSION,
    MRNA_EXPRESSION_NORMALS,
    RNA_EXPRESSION,
    METHYLATION,
    METHYLATION_BINARY,
    PHOSPHORYLATION,
    PROTEIN_LEVEL,
    PROTEIN_ARRAY_PROTEIN_LEVEL,
    PROTEIN_ARRAY_PHOSPHORYLATION,
    GENESET_SCORE;
};

Correct reference to renamed class in comment