cytoscape & charts
galaxy startup errors and warnings
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Wednesday, 5 April 2017 Wed, 5 Apr '17
Dear galaxy-dev, I just wanted to test the exciting cytoscape charts plugin that was just announced: https://github.com/galaxyproject/galaxy/pull/3817 So I created a small sif file nodeA xx nodeB nodeB xx nodeC nodeC xx nodeD nodeD xx nodeA nodeB xx nodeD I guess I have to click the "Visualize" button of the data set where I have the options "Charts" and "Graph Visualizations". The former has only oine option: Multiple Sequence Alignment (BioJS). So I guess its the latter which shows me a graph. But it looks different to the example in the pull request, e.g. node names are not shown and I can not interact as shown in the three figures. Is there some docomentation that I could read. In general I would be interested to read about the Charts. Would be grateful about some pointers. Cheers, Matthias -- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt(a)ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------
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Aysam Guerler
Wednesday, 5 April Wed, 5 Apr
Hi Matthias, Can you verify that the file is recognized as 'sif'-file in the Galaxy history and not as 'txt'-file? Please change the format if necessary. I hope this helps, Sam On Wed, Apr 5, 2017 at 7:01 AM, Matthias Bernt <m.bernt(a)ufz.de&gt; wrote:
Dear galaxy-dev, I just wanted to test the exciting cytoscape charts plugin that was just announced: https://github.com/galaxyproject/galaxy/pull/3817 So I created a small sif file nodeA xx nodeB nodeB xx nodeC nodeC xx nodeD nodeD xx nodeA nodeB xx nodeD I guess I have to click the "Visualize" button of the data set where I have the options "Charts" and "Graph Visualizations". The former has only oine option: Multiple Sequence Alignment (BioJS). So I guess its the latter which shows me a graph. But it looks different to the example in the pull request, e.g. node names are not shown and I can not interact as shown in the three figures. Is there some docomentation that I could read. In general I would be interested to read about the Charts. Would be grateful about some pointers. Cheers, Matthias -- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt(a)ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann ------------------------------------------- ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/