<gh_stars>1-10
from mchap.assemble import DenovoMCMC
from mchap.calling import CallingMCMC
from mchap.io import (
    SNP,
    Locus,
    read_bed4,
    extract_sample_ids,
    extract_read_variants,
    encode_read_alleles,
    encode_read_distributions,
)
from mchap.encoding.integer import (
    minimum_error_correction,
    kmer_representation,
)
from mchap import combinatorics
from mchap import mset
from mchap.version import __version__

__all__ = [
    "DenovoMCMC",
    "CallingMCMC",
    "Locus",
    "SNP",
    "combinatorics",
    "read_bed4",
    "extract_sample_ids",
    "extract_read_variants",
    "encode_read_alleles",
    "encode_read_distributions",
    "minimum_error_correction",
    "kmer_representation",
    "mset",
    "__version__",
]
