language:en license:cc-by-4.0 biology plant science named entity recognition relation extraction region:us
---
license: cc-by-4.0
language:
- en
tags:
- biology
- plant science
- named entity recognition
- relation extraction
pretty_name: PICKLE
---
# PICKLE
PICKLE is the dataset associated with the manuscript *In a PICKLE: A gold standard entity and relation corpus for the molecular plant sciences*. The code repository associated with this dataset can be found [here](https://github.com/serenalotreck/pickle-corpus-code).

## Format specification
This dataset is formatted according to the [specifications for use with the DyGIE++ architecture](https://github.com/dwadden/dygiepp/blob/master/doc/data.md).

## Dataset details
There are a total of 250 documents in `all.jsonl`, split up into 68%/12%/20% train/dev/test. Each document is an abstract from a scientific paper in the search results for the terms "gibberellic acid" and "jasmonic acid". There are 6,245 entity and 2,149 relation annotations across the 250 documents.