Q:

com.ibm.jsse2.util.j: Certificate chaining error while accessing a page through https in notes agent

I have following situation - I want to get page content using https request and java agent. However, I'm getting following error message:
javax.net.ssl.SSLHandshakeException: com.ibm.jsse2.util.j: Certificate chaining error

I already imported internet certificates to my local notes cacerts file, but nothing changed.
However, when I'm running same code in Eclipse, using keystore with certificates downloaded from page I try to receive and it works fine.
I'm out of ideas, any suggestions will be appreciated!
===EDIT===
Dmytro Pastovenskyi's answer helped me, but additionally to get rid of protocol_version exception I had to use following code, setting version of TLS used:
System.setProperty("https.protocols", "TLSv1");

It seems nessesary to establish connection to some sites using 1.6 IBM JAVA.

A:

I had same issue some times before.

It looks like IBM Domino server more strict when it check certificates. Our administrator who at the beginning said that chain is correct later found an issue with chain (and yes, it worked for .NET/JAVA and other platform, just not with Domino). Try to find some online tools that verify chain.
Before chain is fixed you can simply disabled certificate validation. I've an article how to do it (+ some other articles that may help you). Have a look here: Disabling certificate validation in Java

