filtering_purify.py

import json
from itertools import product

import numpy as np
import pandas as pd
import seaborn as sns
from matplotlib import pyplot as plt

from datasets import Dataset

parameters_min_e_freq = [1, 2, 3, 4]
parameters_max_p_freq = [100, 50, 25, 10]
assert len(parameters_min_e_freq) == 4
assert len(parameters_max_p_freq) == 4
sns.set_theme(style="whitegrid")


def is_entity(token):
    return any(i.isupper() for i in token)


# load filtered data
with open(f"data/t_rex.filter_unified.jsonl") as f:
    data = Dataset.from_list([json.loads(i) for i in f.read().split('\n') if len(i) > 0])
df_main = data.to_pandas()
# entity frequency filter
c_sub = df_main.groupby("subject")['title'].count()
c_obj = df_main.groupby("object")['title'].count()
key = set(list(c_sub.index) + list(c_obj.index))
count_main = pd.DataFrame(
    [{'entity': k, "subject": c_sub[k] if k in c_sub else 0, "object": c_obj[k] if k in c_obj else 0} for k in key])
count_main.index = count_main.pop('entity')
count_main['is_entity'] = [is_entity(i) for i in count_main.index]
count_main['sum'] = count_main['subject'] + count_main['object']


def filtering(row, min_freq: int = 3, target: str = "subject"):
    if not row['is_entity']:
        return True
    return row[target] >= min_freq


def main(min_entity_freq, max_pairs_predicate, min_pairs_predicate: int = 3, random_sampling: bool = True):
    df = df_main.copy()
    count_filter_sub = count_main[count_main.apply(lambda x: filtering(x, min_freq=min_entity_freq, target='subject'), axis=1)]['subject']
    count_filter_obj = count_main[count_main.apply(lambda x: filtering(x, min_freq=min_entity_freq, target='object'), axis=1)]['object']
    vocab_sub = set(count_filter_sub.index)
    vocab_obj = set(count_filter_obj.index)
    df['flag_subject'] = [i in vocab_sub for i in df['subject']]
    df['flag_object'] = [i in vocab_obj for i in df['object']]
    df['flag'] = df['flag_subject'] & df['flag_object']
    df_filter = df[df['flag']]
    df_filter.pop("flag")
    df_filter.pop("flag_subject")
    df_filter.pop("flag_object")
    df_filter['count_subject'] = [count_filter_sub.loc[i] for i in df_filter['subject']]
    df_filter['count_object'] = [count_filter_obj.loc[i] for i in df_filter['object']]
    df_filter['count_sum'] = df_filter['count_subject'] + df_filter['count_object']

    # predicate frequency filter
    if random_sampling:
        df_balanced = pd.concat(
            [g if len(g) <= max_pairs_predicate else g.sample(max_pairs_predicate, random_state=0) for _, g in
             df_filter.groupby("predicate") if len(g) >= min_pairs_predicate])
    else:
        df_balanced = pd.concat(
            [g if len(g) <= max_pairs_predicate else g.sort_values(by='count_sum', ascending=False).head(max_pairs_predicate) for _, g in
             df_filter.groupby("predicate") if len(g) >= min_pairs_predicate])

    df_balanced.pop("count_subject")
    df_balanced.pop("count_object")
    df_balanced.pop("count_sum")
    df_balanced = df_balanced.drop_duplicates(subset=['subject', 'object', 'predicate'], keep='last')

    # return data
    target_data = [i.to_dict() for _, i in df_balanced.iterrows()]
    predicate_dist = df_balanced.groupby("predicate")['text'].count().sort_values(ascending=False).to_dict()
    entity, count = np.unique(df_balanced['object'].tolist() + df_balanced['subject'].tolist(), return_counts=True)
    entity_dist = dict(list(zip(entity.tolist(), count.tolist())))
    return predicate_dist, entity_dist, target_data


if __name__ == '__main__':

    p_dist_full = []
    e_dist_full = []
    config = []
    candidates = list(product(parameters_min_e_freq, parameters_max_p_freq))

    # run filtering with different configs
    for min_e_freq, max_p_freq in candidates:
        p_dist, e_dist, new_data = main(
            min_entity_freq=min_e_freq, max_pairs_predicate=max_p_freq, random_sampling=False)
        p_dist_full.append(p_dist)
        e_dist_full.append(e_dist)
        config.append([min_e_freq, max_p_freq])
        # save data
        with open(f"data/t_rex.filter_unified.min_entity_{min_e_freq}_max_predicate_{max_p_freq}.jsonl", 'w') as f:
            f.write('\n'.join([json.dumps(i) for i in new_data]))

    # plot predicate distribution
    df_p = pd.DataFrame([dict(enumerate(sorted(p.values(), reverse=True))) for p in p_dist_full]).T
    df_p.columns = [f"min entity: {mef}, max predicate: {mpf}" for mef, mpf in candidates]
    fig, axes = plt.subplots(2, 2, constrained_layout=True)
    fig.suptitle('Predicate Distribution over Different Configurations')
    for (x, y), mpf in zip([(0, 0), (0, 1), (1, 0), (1, 1)], parameters_max_p_freq):
        _df = df_p[[f"min entity: {mef}, max predicate: {mpf}" for mef in parameters_min_e_freq]]
        _df.columns = [f"min entity: {mef}" for mef in parameters_min_e_freq]
        ax = sns.lineplot(ax=axes[x, y], data=_df, linewidth=1)
        if mpf != 100:
            ax.legend_.remove()
        axes[x, y].set_title(f'max predicate: {mpf}')
    fig.supxlabel('unique predicates sorted by frequency')
    fig.supylabel('number of triples')
    fig.savefig("data/stats.predicate_distribution.png", bbox_inches='tight')
    fig.clf()

    # plot entity distribution
    df_e = pd.DataFrame([dict(enumerate(sorted(e.values(), reverse=True))) for e in e_dist_full]).T
    df_e.columns = [f"min entity: {mef}, max predicate: {mpf}" for mef, mpf in candidates]
    fig, axes = plt.subplots(2, 2, constrained_layout=True)
    fig.suptitle('Entity Distribution over Different Configurations')
    for (x, y), mpf in zip([(0, 0), (0, 1), (1, 0), (1, 1)], parameters_max_p_freq):
        _df = df_e[[f"min entity: {mef}, max predicate: {mpf}" for mef in parameters_min_e_freq]]
        _df.columns = [f"min entity: {mef}" for mef in parameters_min_e_freq]
        ax = sns.lineplot(ax=axes[x, y], data=_df, linewidth=1)
        ax.set(xscale='log')
        if mpf != 100:
            ax.legend_.remove()
        axes[x, y].set_title(f'max predicate: {mpf}')
    fig.supxlabel('unique entities sorted by frequency')
    fig.supylabel('number of triples')
    fig.savefig("data/stats.entity_distribution.png", bbox_inches='tight')
    fig.clf()