README.md

metadata

license: apache-2.0
language:
  - en
tags:
  - pubmed
  - medical
  - medicine
  - NIH
  - science
pretty_name: dataclysm-arxiv
size_categories:
  - 10M<n<100M

DATACLYSM PATCH 0.0.4: PUBMED

USE THE NOTEBOOK TO GET STARTED!

https://github.com/somewheresystems/dataclysm

somewheresystems/dataclysm-pubmed

This dataset comprises of 35.7 million PubMed metadata entries including title and some (~69% with) abstracts, with two new columns added: title-embeddings and abstract-embeddings. These additional columns were generated using the bge-small-en-v1.5 embeddings model. The dataset was sourced from the PubMed Baseline as of December 12, 2023. https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/

Embeddings Model

We used https://huggingface.co/BAAI/bge-small-en-v1.5 to embed the title and abstract fields.

Contact

Please contact [email protected] for inquiries.