I've updated the following packages:


- ~~chore: update lxml to 4.8.0~~
- chore: update MarkupSafe to 2.1.0
- chore: update astropy to 5.0.1
- chore: update logbook to 1.5.3
- chore: update regex to 2022.1.18
- chore: update sqlalchemy to 1.4.31
- chore: updated cffi to 1.15.0
- chore: updated imageio to 2.16.1
- chore: updated setuptools to 60.9.3
- chore: updated pytest to 7.0.1
- chore: updated typing-extensions to 4.1.1
- chore: updated pyrsistent to 0.18.1
- chore: updated threadpoolctl to 3.1.0

I wasn't sure how caching was done (if I update numpy, etc. all at once will
that blow up the CI build time?), and I'm hoping to avoid failures, so I left
the big or patched ones alone. Was after lxml (see #2225), but thought I'd get a couple other ones while at it. Removed it, having an issue so will be bumped separately.

* matplotlib 3.3.3 ❌ -> 3.5.1
* nltk 3.6.7 ❌ -> 3.7
* numpy 1.21.4 ❌ -> 1.22.2
* pandas 1.3.5 ❌ -> 1.4.1
* pillow 9.0.0 ❌ -> 9.0.1
* pyrsistent 0.18.0 ❌ -> 0.18.1
* python-sat 0.1.7.dev15 ❌ -> 0.1.7.dev16
* scikit-image 0.19.1 ❌ -> 0.19.2
* scipy 1.7.3 ❌ -> 1.8.0
* statsmodels 0.13.1 ❌ -> 0.13.2
* swiglpk 5.0.3 ❌ -> 5.0.4
* yt 3.6.1 ❌ -> 4.0.2
* zarr 2.10.3 ❌ -> 2.11.0

chore: some package updates. I've updated the following packages:


- ~~chore: update lxml to 4.8.0~~
- chore: update MarkupSafe to 2.1.0
- chore: update astropy to 5.0.1
- chore: update logbook to 1.5.3
- chore: update regex to 2022.1.18
- chore: update sqlalchemy to 1.4.31
- chore: updated cffi to 1.15.0
- chore: updated imageio to 2.16.1
- chore: updated setuptools to 60.9.3
- chore: updated pytest to 7.0.1
- chore: updated typing-extensions to 4.1.1
- chore: updated pyrsistent to 0.18.1
- chore: updated threadpoolctl to 3.1.0

I wasn't sure how caching was done (if I update numpy, etc. all at once will
that blow up the CI build time?), and I'm hoping to avoid failures, so I left
the big or patched ones alone. Was after lxml (see #2225), but thought I'd get a couple other ones while at it. Removed it, having an issue so will be bumped separately.

* matplotlib 3.3.3 ❌ -> 3.5.1
* nltk 3.6.7 ❌ -> 3.7
* numpy 1.21.4 ❌ -> 1.22.2
* pandas 1.3.5 ❌ -> 1.4.1
* pillow 9.0.0 ❌ -> 9.0.1
* pyrsistent 0.18.0 ❌ -> 0.18.1
* python-sat 0.1.7.dev15 ❌ -> 0.1.7.dev16
* scikit-image 0.19.1 ❌ -> 0.19.2
* scipy 1.7.3 ❌ -> 1.8.0
* statsmodels 0.13.1 ❌ -> 0.13.2
* swiglpk 5.0.3 ❌ -> 5.0.4
* yt 3.6.1 ❌ -> 4.0.2
* zarr 2.10.3 ❌ -> 2.11.0

From 117b00d72c0472eb6a33e8fcbf17e3bfe3337a88 Mon Sep 17 00:00:00 2001
From: Hood Chatham <roberthoodchatham@gmail.com>
Date: Fri, 31 Dec 2021 22:27:07 -0800
Subject: [PATCH] Add lapack_extras to linalg/setup.py

---
 scipy/linalg/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scipy/linalg/setup.py b/scipy/linalg/setup.py
index 2f0ef0a48..d384081a2 100644
--- a/scipy/linalg/setup.py
+++ b/scipy/linalg/setup.py
@@ -43,7 +43,7 @@ def configuration(parent_package='', top_path=None):
         ext._pre_build_hook = blas_ilp64_pre_build_hook(lapack_ilp64_opt)
 
     # flapack:
-    sources = ['flapack.pyf.src']
+    sources = ['flapack.pyf.src', 'lapack_extras.f']
     sources += get_g77_abi_wrappers(lapack_opt)
     dep_pfx = join('src', 'lapack_deprecations')
     deprecated_lapack_routines = [join(dep_pfx, c + 'gegv.f') for c in 'cdsz']
-- 
2.25.1


From 117b00d72c0472eb6a33e8fcbf17e3bfe3337a88 Mon Sep 17 00:00:00 2001
From: Hood Chatham <roberthoodchatham@gmail.com>
Date: Fri, 31 Dec 2021 22:27:07 -0800
Subject: [PATCH] Add lapack_extras to linalg/setup.py

---
 scipy/linalg/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scipy/linalg/setup.py b/scipy/linalg/setup.py
index 2f0ef0a48..d384081a2 100644
--- a/scipy/linalg/setup.py
+++ b/scipy/linalg/setup.py
@@ -43,7 +43,7 @@ def configuration(parent_package='', top_path=None):
         ext._pre_build_hook = blas_ilp64_pre_build_hook(lapack_ilp64_opt)
 
     # flapack:
-    sources = ['flapack.pyf.src']
+    sources = ['flapack.pyf.src', 'lapack_extras.f']
     sources += get_g77_abi_wrappers(lapack_opt)
     dep_pfx = join('src', 'lapack_deprecations')
     deprecated_lapack_routines = [join(dep_pfx, c + 'gegv.f') for c in 'cdsz']
-- 
2.25.1

