annotations_creators:
- unknown
language_creators:
- unknown
language:
- en
license:
- unknown
multilinguality:
- monolingual
size_categories:
- 1k<n<10k
task_categories:
- text-generation
task_ids: []
pretty_name: PubMed
tags:
- keyphrase-generation
- keyphrase-extraction
- text-mining
Schutz 2008 PubMed dataset for keyphrase extraction
About
This dataset is made of 1320 articles with full text and author assigned keyphrases.
Details about the dataset can be found in the original paper: Keyphrase extraction from single documents in the open domain exploiting linguistic and statistical methods. Alexander Thorsten Schutz. Master's thesis, National University of Ireland (2008).
Reference (indexer-assigned) keyphrases are also categorized under the PRMU (Present-Reordered-Mixed-Unseen) scheme as proposed in the following paper:
- Florian Boudin and Ygor Gallina. 2021. Redefining Absent Keyphrases and their Effect on Retrieval Effectiveness. In Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, pages 4185–4193, Online. Association for Computational Linguistics.
Text pre-processing (tokenization) is carried out using spacy (en_core_web_sm model) with a special rule to avoid splitting words with hyphens (e.g. graph-based is kept as one token). Stemming (Porter's stemmer implementation provided in nltk) is applied before reference keyphrases are matched against the source text.
Content
The details of the dataset are in the table below:
| Split | # documents | # keyphrases by document (average) | % Present | % Reordered | % Mixed | % Unseen |
|---|---|---|---|---|---|---|
| Test | 1320 | 5.40 | 84.54 | 9.14 | 3.84 | 2.47 |
The following data fields are available:
- id: unique identifier of the document.
- title: title of the document.
- text: full article minus the title.
- keyphrases: list of reference keyphrases.
- prmu: list of Present-Reordered-Mixed-Unseen categories for reference keyphrases.
NB: The present keyphrases (represented by the "P" label in the PRMU column) are sorted by their apparition order in the text (title + text).