// Path: src/util/DoubleConverter.java
// public class DoubleConverter implements IStringConverter<Double>
// {
// 	@Override
// 	public Double convert(String s)
// 	{
// 		return Double.parseDouble(s);
// 	}
// }
// 
// Path: src/util/GenomeConverter.java
// public class GenomeConverter implements IStringConverter<AlignmentToolService.Genome>
// {
// 	@Override
// 	public AlignmentToolService.Genome convert(String s)
// 	{
// 		AlignmentToolService.Genome g = AlignmentToolService.Genome.valueOf(s);
// 		return g;
// 	}
// }


import com.beust.jcommander.Parameter;
import util.DoubleConverter;
import util.GenomeConverter;
package external;


public class AccuracyEvaluationProgram extends EvaluationProgram
{
	@Parameter(names = "--length", description = "Length of genome (if generated)")
	protected int generatedGenomeLength = AlignmentToolService.DEFAULT_GENERATED_GENOME_LENGTH;

	@Parameter(names = "--genome", description = "Genome to use; HUMAN and HUMAN_CHR22 require FASTA files to read",
// Path: src/util/DoubleConverter.java
// public class DoubleConverter implements IStringConverter<Double>
// {
// 	@Override
// 	public Double convert(String s)
// 	{
// 		return Double.parseDouble(s);
// 	}
// }
// 
// Path: src/util/GenomeConverter.java
// public class GenomeConverter implements IStringConverter<AlignmentToolService.Genome>
// {
// 	@Override
// 	public AlignmentToolService.Genome convert(String s)
// 	{
// 		AlignmentToolService.Genome g = AlignmentToolService.Genome.valueOf(s);
// 		return g;
// 	}
// }


// Path: src/external/AccuracyEvaluationProgram.java
import com.beust.jcommander.Parameter;
import util.DoubleConverter;
import util.GenomeConverter;

package external;


public class AccuracyEvaluationProgram extends EvaluationProgram
{
	@Parameter(names = "--length", description = "Length of genome (if generated)")
	protected int generatedGenomeLength = AlignmentToolService.DEFAULT_GENERATED_GENOME_LENGTH;

	@Parameter(names = "--genome", description = "Genome to use; HUMAN and HUMAN_CHR22 require FASTA files to read",
			converter = GenomeConverter.class)