# Path: dev_tools/env_tools.py
# def get_unhidden_ungenerated_python_files(directory: str) -> Iterable[str]:
# def create_virtual_env(venv_path: str,
#                        requirements_paths: Iterable[str],
#                        python_path: str,
#                        verbose: bool) -> None:
# def prepare_temporary_test_environment(
#         destination_directory: str,
#         repository: GithubRepository,
#         pull_request_number: Optional[int],
#         verbose: bool,
#         env_name: str = '.test_virtualenv',
#         python_path: str = '/usr/bin/python3.5',
#         commit_ids_known_callback: Callable[[PreparedEnv], None] = None
# ) -> PreparedEnv:
# 
# Path: dev_tools/shell_tools.py
# BOLD = 1
# DIM = 2
# RED = 31
# GREEN = 32
# YELLOW = 33
# def highlight(text: str, color_code: int, bold: bool=False) -> str:
#     def __init__(self, out_pipe: Optional[IO[str]] = None) -> None:
# async def _async_forward(async_chunks: collections.AsyncIterable,
#                          out: Optional[Union[TeeCapture, IO[str]]]
#                          ) -> Optional[str]:
# async def _async_wait_for_process(
#         future_process: Any,
#         out: Optional[Union[TeeCapture, IO[str]]] = sys.stdout,
#         err: Optional[Union[TeeCapture, IO[str]]] = sys.stderr
# ) -> CommandOutput:
# def abbreviate_command_arguments_after_switches(
#         cmd: Tuple[str, ...]) -> Tuple[str, ...]:
# def run_cmd(*cmd: Optional[str],
#             out: Optional[Union[TeeCapture, IO[str]]] = sys.stdout,
#             err: Optional[Union[TeeCapture, IO[str]]] = sys.stderr,
#             raise_on_fail: bool = True,
#             log_run_to_stderr: bool = True,
#             abbreviate_non_option_arguments: bool = False,
#             **kwargs
#             ) -> CommandOutput:
# def run_shell(cmd: str,
#               out: Optional[Union[TeeCapture, IO[str]]] = sys.stdout,
#               err: Optional[Union[TeeCapture, IO[str]]] = sys.stderr,
#               raise_on_fail: bool = True,
#               log_run_to_stderr: bool = True,
#               **kwargs
#               ) -> CommandOutput:
# def output_of(*cmd: Optional[str], **kwargs) -> str:
# class TeeCapture:


from typing import Dict, Tuple, List, cast, Set, Optional
from dev_tools import env_tools, shell_tools
import os.path
import re

    # Ignore surrounding whitespace.
    content = content.strip()

    # Ignore end-of-line comments.
    # TODO: avoid # in strings, etc.
    if '#' in content:
        content = content[:content.index('#')].strip()

    # Ignored line pattern?
    if any(re.search(pat, content) for pat in IGNORED_LINE_PATTERNS):
        return False

    return (is_from_cover_annotation_file or
            line_content_counts_as_uncovered_manual(content))


def is_applicable_python_file(rel_path: str) -> bool:
    """
    Determines if a file should be included in incremental coverage analysis.

    Args:
        rel_path: The repo-relative file path being considered.
    Returns:
        Whether to include the file.
    """
    return (rel_path.endswith('.py') and
            not any(re.search(pat, rel_path) for pat in IGNORED_FILE_PATTERNS))



# Path: dev_tools/env_tools.py
# def get_unhidden_ungenerated_python_files(directory: str) -> Iterable[str]:
# def create_virtual_env(venv_path: str,
#                        requirements_paths: Iterable[str],
#                        python_path: str,
#                        verbose: bool) -> None:
# def prepare_temporary_test_environment(
#         destination_directory: str,
#         repository: GithubRepository,
#         pull_request_number: Optional[int],
#         verbose: bool,
#         env_name: str = '.test_virtualenv',
#         python_path: str = '/usr/bin/python3.5',
#         commit_ids_known_callback: Callable[[PreparedEnv], None] = None
# ) -> PreparedEnv:
# 
# Path: dev_tools/shell_tools.py
# BOLD = 1
# DIM = 2
# RED = 31
# GREEN = 32
# YELLOW = 33
# def highlight(text: str, color_code: int, bold: bool=False) -> str:
#     def __init__(self, out_pipe: Optional[IO[str]] = None) -> None:
# async def _async_forward(async_chunks: collections.AsyncIterable,
#                          out: Optional[Union[TeeCapture, IO[str]]]
#                          ) -> Optional[str]:
# async def _async_wait_for_process(
#         future_process: Any,
#         out: Optional[Union[TeeCapture, IO[str]]] = sys.stdout,
#         err: Optional[Union[TeeCapture, IO[str]]] = sys.stderr
# ) -> CommandOutput:
# def abbreviate_command_arguments_after_switches(
#         cmd: Tuple[str, ...]) -> Tuple[str, ...]:
# def run_cmd(*cmd: Optional[str],
#             out: Optional[Union[TeeCapture, IO[str]]] = sys.stdout,
#             err: Optional[Union[TeeCapture, IO[str]]] = sys.stderr,
#             raise_on_fail: bool = True,
#             log_run_to_stderr: bool = True,
#             abbreviate_non_option_arguments: bool = False,
#             **kwargs
#             ) -> CommandOutput:
# def run_shell(cmd: str,
#               out: Optional[Union[TeeCapture, IO[str]]] = sys.stdout,
#               err: Optional[Union[TeeCapture, IO[str]]] = sys.stderr,
#               raise_on_fail: bool = True,
#               log_run_to_stderr: bool = True,
#               **kwargs
#               ) -> CommandOutput:
# def output_of(*cmd: Optional[str], **kwargs) -> str:
# class TeeCapture:


# Path: dev_tools/incremental_coverage.py
from typing import Dict, Tuple, List, cast, Set, Optional
from dev_tools import env_tools, shell_tools
import os.path
import re


    # Ignore surrounding whitespace.
    content = content.strip()

    # Ignore end-of-line comments.
    # TODO: avoid # in strings, etc.
    if '#' in content:
        content = content[:content.index('#')].strip()

    # Ignored line pattern?
    if any(re.search(pat, content) for pat in IGNORED_LINE_PATTERNS):
        return False

    return (is_from_cover_annotation_file or
            line_content_counts_as_uncovered_manual(content))


def is_applicable_python_file(rel_path: str) -> bool:
    """
    Determines if a file should be included in incremental coverage analysis.

    Args:
        rel_path: The repo-relative file path being considered.
    Returns:
        Whether to include the file.
    """
    return (rel_path.endswith('.py') and
            not any(re.search(pat, rel_path) for pat in IGNORED_FILE_PATTERNS))



def check_for_uncovered_lines(env: env_tools.PreparedEnv) -> int: