# Path: pyani/pyani_jobs.py
# class Job(object):
# class JobGroup(object):
#     def __init__(self, name: str, command: str, queue: Optional[str] = None) -> None:
#     def add_dependency(self, job) -> None:
#     def remove_dependency(self, job) -> None:
#     def wait(self, interval: float = SGE_WAIT) -> None:
#     def __init__(
#         self,
#         name: str,
#         command: str,
#         queue: Optional[str] = None,
#         arguments: Optional[Dict[str, List[Any]]] = None,
#     ) -> None:
#     def generate_script(self) -> None:
#     def add_dependency(self, job) -> None:
#     def remove_dependency(self, job) -> None:
#     def wait(self, interval: float = SGE_WAIT) -> None:


from typing import Dict, NamedTuple
from pyani import pyani_jobs
import pytest
                    "-f_ARRAY=( file1 file2 file3  )\n\n",
                    'let "-f_INDEX=$TASK_ID % 3"\n',
                    "-f=${-f_ARRAY[$-f_INDEX]}\n",
                    'let "TASK_ID=$TASK_ID / 3"\n\n',
                    "cat\n",
                ]
            ),
        ),
        JobScript(
            {"-f": ["file1", "file2"], "--format": ["fmtA", "fmtB"]},
            "".join(
                [
                    'let "TASK_ID=$SGE_TASK_ID - 1"\n',
                    "--format_ARRAY=( fmtA fmtB  )\n",
                    "-f_ARRAY=( file1 file2  )\n\n",
                    'let "--format_INDEX=$TASK_ID % 2"\n',
                    "--format=${--format_ARRAY[$--format_INDEX]}\n",
                    'let "TASK_ID=$TASK_ID / 2"\n',
                    'let "-f_INDEX=$TASK_ID % 2"\n',
                    "-f=${-f_ARRAY[$-f_INDEX]}\n",
                    'let "TASK_ID=$TASK_ID / 2"\n\n',
                    "myprog\n",
                ]
            ),
        ),
    )


def test_create_job():
    """Create a dummy job."""

# Path: pyani/pyani_jobs.py
# class Job(object):
# class JobGroup(object):
#     def __init__(self, name: str, command: str, queue: Optional[str] = None) -> None:
#     def add_dependency(self, job) -> None:
#     def remove_dependency(self, job) -> None:
#     def wait(self, interval: float = SGE_WAIT) -> None:
#     def __init__(
#         self,
#         name: str,
#         command: str,
#         queue: Optional[str] = None,
#         arguments: Optional[Dict[str, List[Any]]] = None,
#     ) -> None:
#     def generate_script(self) -> None:
#     def add_dependency(self, job) -> None:
#     def remove_dependency(self, job) -> None:
#     def wait(self, interval: float = SGE_WAIT) -> None:


# Path: tests/test_jobs.py
from typing import Dict, NamedTuple
from pyani import pyani_jobs
import pytest

                    "-f_ARRAY=( file1 file2 file3  )\n\n",
                    'let "-f_INDEX=$TASK_ID % 3"\n',
                    "-f=${-f_ARRAY[$-f_INDEX]}\n",
                    'let "TASK_ID=$TASK_ID / 3"\n\n',
                    "cat\n",
                ]
            ),
        ),
        JobScript(
            {"-f": ["file1", "file2"], "--format": ["fmtA", "fmtB"]},
            "".join(
                [
                    'let "TASK_ID=$SGE_TASK_ID - 1"\n',
                    "--format_ARRAY=( fmtA fmtB  )\n",
                    "-f_ARRAY=( file1 file2  )\n\n",
                    'let "--format_INDEX=$TASK_ID % 2"\n',
                    "--format=${--format_ARRAY[$--format_INDEX]}\n",
                    'let "TASK_ID=$TASK_ID / 2"\n',
                    'let "-f_INDEX=$TASK_ID % 2"\n',
                    "-f=${-f_ARRAY[$-f_INDEX]}\n",
                    'let "TASK_ID=$TASK_ID / 2"\n\n',
                    "myprog\n",
                ]
            ),
        ),
    )


def test_create_job():
    """Create a dummy job."""

    job = pyani_jobs.Job("empty", "")