Dataset Viewer
Full Screen Viewer
Full Screen
The dataset viewer is not available for this dataset.
Cannot get the config names for the dataset.
Error code: ConfigNamesError
Exception: ImportError
Message: To be able to use twrightsman/phytozome_genomes, you need to install the following dependency: Bio.
Please install it using 'pip install biopython' for instance.
Traceback: Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response
config_names = get_dataset_config_names(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 347, in get_dataset_config_names
dataset_module = dataset_module_factory(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1914, in dataset_module_factory
raise e1 from None
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1880, in dataset_module_factory
return HubDatasetModuleFactoryWithScript(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1504, in get_module
local_imports = _download_additional_modules(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 354, in _download_additional_modules
raise ImportError(
ImportError: To be able to use twrightsman/phytozome_genomes, you need to install the following dependency: Bio.
Please install it using 'pip install biopython' for instance.Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Phytozome Genomes
This dataset consists of 100 current (as of 2023-06-20) unrestricted
Phytozome genome assemblies, listed in genomes.tsv.
Currently, the training, validation, and test splits are a random 90/5/5% split, but this will change before version 1.0.
Individual observations are entire chromosomes/contigs, so it is up to the user to chunk them up further to their appropriate size.
Quickstart
$ conda env create --file environment.yml
$ conda activate phytozome_genomes_dataset
import datasets
dataset = datasets.load_dataset('twrightsman/phytozome_genomes', username = 'my_jgi_username', password = 'my_jgi_password')
for observation in dataset['train']:
# do cool stuff here, for example:
seqid = observation['seqid']
sequence = observation['sequence']
- Downloads last month
- 48