tyang816/DeepLocBinary_AlphaFold2

DeepLocBinary Dataset with AlphaFold2 Structural Sequence

• Description: Protein localization encompasses the processes that establish and maintain proteins at specific locations.
• Number of labels: 2
• Problem Type: single_label_classification
• Columns:
  • aa_seq: protein amino acid sequence
  • foldseek_seq: foldseek 20 3di structural sequence
  • ss8_seq: DSSP 8 secondary structure sequence
  • location: On the membrane or not

Github

Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models

https://github.com/tyang816/SES-Adapter

Citation

Please cite our work if you use our dataset.

@article{tan2024ses-adapter,
  title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein Language Models},
  author={Tan, Yang and Li, Mingchen and Zhou, Bingxin and Zhong, Bozitao and Zheng, Lirong and Tan, Pan and Zhou, Ziyi and Yu, Huiqun and Fan, Guisheng and Hong, Liang},
  journal={Journal of Chemical Information and Modeling},
  year={2024},
  publisher={ACS Publications}
}