metadata

library_name: transformers
tags: []

Model Card for Model ID

Radiography - Brain CT Image Caption and Region of Interest Detection

Model Details

Model Description

This is the model card of a 🤗 transformers model that has been pushed on the Hub. This model card has been automatically generated.

Developed by: [More Information Needed]
Funded by [optional]: [More Information Needed]
Shared by [optional]: [More Information Needed]
Model type: [More Information Needed]
Language(s) (NLP): [More Information Needed]
License: [More Information Needed]
Finetuned from model [optional]: [More Information Needed]

Model Sources [optional]

Repository: [More Information Needed]
Paper [optional]: [More Information Needed]
Demo [optional]: [More Information Needed]

Usage

import os from datasets import load_dataset

Load dataset

ds = load_dataset("mychen76/medtrinity_brain_408_hf")
train=ds["train"]

idx=20
test_image = test_ds[idx]["image"]
test_image.resize([350, 350])

Load Model

import torch
from PIL import Image
import matplotlib.pyplot as plt
import textwrap
from transformers import AutoModelForCausalLM, AutoProcessor

# Set device
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
mode_id_or_path = "mychen76/Florence2-FT-Med-brain-408"

# Load fine-tuned model and processor
model = AutoModelForCausalLM.from_pretrained(model_id_or_path, trust_remote_code=True).to(device)
processor = AutoProcessor.from_pretrained(model_id_or_path, trust_remote_code=True)

Test Model

# Function to run the model on an example
def run_model_inference(task_prompt, text_input, image, device="cpu"):

    if text_input is None:
        prompt = task_prompt
    else:
        prompt = task_prompt + text_input

    # print("PROMPT=",prompt)
    # Ensure the image is in RGB mode
    if image.mode != "RGB":
        image = image.convert("RGB")

    inputs = processor(text=prompt, images=image, return_tensors="pt").to(device)
    generated_ids = model.generate(
        input_ids=inputs["input_ids"],
        pixel_values=inputs["pixel_values"],
        max_new_tokens=1024,
        num_beams=3
    )
    generated_text = processor.batch_decode(generated_ids, skip_special_tokens=False)[0]
    parsed_answer = processor.post_process_generation(generated_text, task=task_prompt, image_size=(image.width, image.height))
    return parsed_answer

Task-1 CAPTION

results = run_model_inference("<CAPTION>",None,test_image)
print(results)

Results

<CAPTION>The image is a non-contrasted CT scan of the brain, showing the abnormal abnormal density, located approximately 1.5% of the image area and appears to have a different density compared to the surrounding brain tissue, which may indicate an intracranial pressure. The region of interest, located adjacent to the adjacent brain, is indicative of a brain tissue. This abnormal area could be related to the brain structures due to the presence of blood or a mass effect, which is a common feature of adjacent brain structures.'

Task-2 CAPTION_DETAILS

results = run_model_inference("<CAPTION_DETAILS>",None,test_image)
print(results)

Results

<CAPTION_DETAILS>The image is a non-contrasted CT scan of the brain, showing the intracranial structures without any medical devices present.\n\nREGION OF INTEREST\nThe region of interest, located brain tissue, occupies approximately 1.5% of the image area and appears to have a different density compared to the surrounding brain tissue.\nCONDITION\nThis region's proximity to other brain structures could be related to a mass effect or as a result of a massage, which is indicative of a intracronial pressure.\nThis abnormal area could be indicative of an abnormal area, potentially potentially leading to a potential mass effect on adjacent brain structures.

Task-3 REGION_OF_INTEREST

results = run_model_inference("<REGION_OF_INTEREST>",None,test_image)
print(results)

Results

<REGION_OF_INTEREST>The region of interest, located adjacent to the brain, occupies approximately 1.5% of the image area and appears to have a different density compared to the surrounding brain tissue, which may indicate an intracranial pressure.

Task-4 OBSERVATION

results = run_model_inference("<REGION_OF_INTEREST>",None,test_image)
print(results)

Results

<OBSERVATION>The region of interest, located approximately 1.5% of the image area and appears to have a different density compared to the surrounding brain tissue, which may indicate an intracranial pressure.

Testing Data, Factors & Metrics

Testing Data

[More Information Needed]

Factors

[More Information Needed]

Metrics

[More Information Needed]

Results

[More Information Needed]

Summary

Model Examination [optional]

[More Information Needed]

Environmental Impact

Carbon emissions can be estimated using the Machine Learning Impact calculator presented in Lacoste et al. (2019).

Hardware Type: [More Information Needed]
Hours used: [More Information Needed]
Cloud Provider: [More Information Needed]
Compute Region: [More Information Needed]
Carbon Emitted: [More Information Needed]

Technical Specifications [optional]

Model Architecture and Objective

[More Information Needed]

Compute Infrastructure

[More Information Needed]

Hardware

[More Information Needed]

Software

[More Information Needed]

Citation [optional]

BibTeX:

[More Information Needed]

APA:

[More Information Needed]

Glossary [optional]

[More Information Needed]

More Information [optional]

[More Information Needed]

Model Card Authors [optional]

[More Information Needed]

Model Card Contact

[More Information Needed]